TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437739.2.1
(574 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820177.1|CN820177 HRO4412_A07_B14ZS5 Lib AA069E1X Aven... 114 6e-032
gb|CN816985.1|CN816985 HRO4527_A03_B05ZS5 Lib AA071E1X Aven... 106 8e-029
>gb|CN820177.1|CN820177 HRO4412_A07_B14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_A07_B14, mRNA
sequence
Length = 675
Score = 114 bits (243), Expect(2) = 6e-032
Identities = 44/70 (62%), Positives = 51/70 (72%)
Frame = +1 / +1
Query: 97 VVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHY 276
V+ L + ALVAAWLPGSEG GITD +FGD+ F GTLP TWF+ DQ P+N GD Y
Sbjct: 400 VIDPQVLEKIDALVAAWLPGSEGNGITDCIFGDHDFVGTLPVTWFRFSDQFPINIGDAKY 579
Query: 277 DPLFPLGFGL 306
DPLFP G+GL
Sbjct: 580 DPLFPFGYGL 609
Score = 37.7 bits (76), Expect(2) = 6e-032
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1 / +1
Query: 7 NLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQP 111
+L+IP G I V VP ++ISGRP+VI P
Sbjct: 307 DLSIPFNGSDLITRVASKVPTLVIVISGRPLVIDP 411
>gb|CN816985.1|CN816985 HRO4527_A03_B05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_A03_B05, mRNA sequence
Length = 608
Score = 106 bits (227), Expect(2) = 8e-029
Identities = 42/65 (64%), Positives = 49/65 (75%)
Frame = +1 / +1
Query: 97 VVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHY 276
V+ Q + + ALVAAWLPGSEG GITD +FGD+ F GTLP TWF+S DQLP+N GD Y
Sbjct: 412 VIDQQVMEKIDALVAAWLPGSEGTGITDCIFGDHDFVGTLPVTWFRSSDQLPINIGDAKY 591
Query: 277 DPLFP 291
D LFP
Sbjct: 592 DLLFP 606
Score = 34.5 bits (69), Expect(2) = 8e-029
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1 / +1
Query: 7 NLTIPEPGPSTIQTVCGAVPCATVLISGRPVVI 105
+L+IP G I V VP ++ISGRP+VI
Sbjct: 319 DLSIPFNGSDLITRVASKVPTLVIVISGRPLVI 417
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,764,908
Number of Sequences: 8143
Number of extensions: 72694
Number of successful extensions: 1511
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 181371188
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)