TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306445.2.1
(1074 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816299.1|CN816299 HRO4519_B10_D19ZS5 Lib AA071E1X Aven... 186 7e-048
gb|CN815253.1|CN815253 HRO4507_F03_L05ZS5 Lib AA071E1X Aven... 116 5e-027
>gb|CN816299.1|CN816299 HRO4519_B10_D19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_B10_D19, mRNA sequence
Length = 678
Score = 186 bits (400), Expect = 7e-048
Identities = 79/98 (80%), Positives = 88/98 (89%)
Frame = -3 / +2
Query: 577 GTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVVDDTLEFLILASDGLWDVVSNEEAVA 398
GTWRVGGVLAVSRAFGDKLLKQYVV DPEI+EEVVD +LEFLILASDGLWDVVSN+EAVA
Sbjct: 5 GTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDGSLEFLILASDGLWDVVSNDEAVA 184
Query: 397 MTRSIQDPEEAAKMLLQEAYKRESSDNITCVVVHFLHG 284
M + I+DPE+AAK LLQEA +R S+DNIT V+V FL G
Sbjct: 185 MVKPIEDPEQAAKRLLQEASQRGSADNITVVIVRFLDG 298
Score = 125 bits (268), Expect = 1e-029
Identities = 59/98 (60%), Positives = 64/98 (65%)
Frame = +3 / -1
Query: 285 PCKKCTTTQVMLSLLSLLYASCKSIFAASSGS*MDLVIATASSLETTSHSPSLARIRNXX 464
P +K T T V+LS L L AS S+FAA SGS + L +ATASSL TTSHSPSLARIRN
Sbjct: 297 PSRKRTMTTVILSALPL*EASWSSLFAACSGSSIGLTMATASSLLTTSHSPSLARIRNSS 118
Query: 465 XXXXXXXXXXXXXXXYCFKSLSPKARETASTPPTRHVP 578
YCFKSLSP ARETA TPPTRHVP
Sbjct: 117 EPSTTSSLISGSATTYCFKSLSPNARETARTPPTRHVP 4
>gb|CN815253.1|CN815253 HRO4507_F03_L05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_F03_L05, mRNA sequence
Length = 562
Score = 116 bits (249), Expect = 5e-027
Identities = 48/92 (52%), Positives = 69/92 (75%)
Frame = -3 / -3
Query: 568 RVGGVLAVSRAFGDKLLKQYVVVDPEIREEVVDDTLEFLILASDGLWDVVSNEEAVAMTR 389
RV G LAV+RAFGD+ LK+++ +P + EEV+D++ +FLILASDGLW V++N+EAV +
Sbjct: 461 RVDGQLAVARAFGDRSLKKHLSSEPHVAEEVIDESSDFLILASDGLWKVMTNQEAVDEIK 282
Query: 388 SIQDPEEAAKMLLQEAYKRESSDNITCVVVHF 293
+D + AAK L ++A R S D+I+CVVV F
Sbjct: 281 DFKDAQAAAKHLTEQAVNRRSKDDISCVVVKF 186
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,043,902
Number of Sequences: 8143
Number of extensions: 174408
Number of successful extensions: 1061
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 378478035
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)