TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.723
(715 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815705.1|CN815705 HRO4514_F03_K06ZS5 Lib AA071E1X Aven... 36 0.005
gb|CN816830.1|CN816830 HRO4525_C08_E15ZS5 Lib AA071E1X Aven... 36 0.005
gb|CN819628.1|CN819628 HRO4402_D03_G06ZS5 Lib AA069E1X Aven... 29 1.2
gb|CN821312.1|CN821312 HRO4423_H07_P13ZS5 Lib AA069E1X Aven... 28 1.6
gb|CN820164.1|CN820164 HRO4411_H06_P11ZS5 Lib AA069E1X Aven... 28 2.3
gb|CN814822.1|CN814822 HRO4502_H03_O06ZS5 Lib AA071E1X Aven... 27 3.1
gb|CN817747.1|CN817747 HRO4461_D06_H11ZS5 Lib AA070E1X Aven... 27 3.1
gb|CN818901.1|CN818901 HRO4473_C01_XXXZS5 Lib AA070E1X Aven... 27 3.1
gb|CN820048.1|CN820048 HRO4410_E06_I12ZS5 Lib AA069E1X Aven... 27 3.1
gb|CN820219.1|CN820219 HRO4412_G03_N06ZS5 Lib AA069E1X Aven... 27 3.1
gb|CN814842.1|CN814842 HRO4503_A11_B21ZS5 Lib AA071E1X Aven... 27 4.3
gb|CN820408.1|CN820408 HRO4419_A05_B09ZS5 Lib AA069E1X Aven... 27 4.3
gb|CN820706.1|CN820706 HRO4416_F01_L02ZS5 Lib AA069E1X Aven... 27 4.3
emb|AX458011.1| Sequence 3 from Patent WO0246387 27 4.3
gb|CN815106.1|CN815106 HRO4505_H10_O19ZS5 Lib AA071E1X Aven... 21 4.3
gb|CN819209.1|CN819209 HRO4451_D06_G11ZS5 Lib AA070E1X Aven... 24 5.2
gb|CN816216.1|CN816216 HRO4518_C03_E06ZS5 Lib AA071E1X Aven... 26 5.8
gb|CN816302.1|CN816302 HRO4519_C01_F01ZS5 Lib AA071E1X Aven... 26 5.8
gb|CN816679.1|CN816679 HRO4523_E08_J15ZS5 Lib AA071E1X Aven... 26 5.8
gb|CN819964.1|CN819964 HRO4409_C06_E11ZS5 Lib AA069E1X Aven... 26 5.8
gb|CN819773.1|CN819773 HRO4403_H09_P17ZS5 Lib AA069E1X Aven... 23 8.3
>gb|CN815705.1|CN815705 HRO4514_F03_K06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_F03_K06, mRNA sequence
Length = 606
Score = 36.3 bits (73), Expect = 0.005
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2 / -2
Query: 467 FTVIVAQKNHHTKFFQTASPDNVLPGT 547
FT + Q+NH + FF +A+ NV PGT
Sbjct: 428 FTAVNVQQNHDSAFFSSAASSNVSPGT 348
>gb|CN816830.1|CN816830 HRO4525_C08_E15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_C08_E15, mRNA sequence
Length = 289
Score = 36.3 bits (73), Expect = 0.005
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2 / -2
Query: 467 FTVIVAQKNHHTKFFQTASPDNVLPGT 547
FT + Q+NH + FF +A+ NV PGT
Sbjct: 135 FTAVNVQQNHDSAFFSSAASSNVSPGT 55
>gb|CN819628.1|CN819628 HRO4402_D03_G06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_D03_G06, mRNA
sequence
Length = 669
Score = 28.6 bits (56), Expect = 1.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / -1
Query: 213 EHQCTPNLPD*K*CPRCLSRG 275
E+Q P+LP+ PRCL RG
Sbjct: 129 EYQLAPSLPERGSSPRCLRRG 67
>gb|CN821312.1|CN821312 HRO4423_H07_P13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_H07_P13, mRNA
sequence
Length = 829
Score = 28.1 bits (55), Expect = 1.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1 / +3
Query: 412 LNVDDLGKLTFTDSIPENNYVFW 344
+ VD LTFT +P+ +FW
Sbjct: 636 VQVDGTNGLTFTSGVPKRELLFW 704
>gb|CN820164.1|CN820164 HRO4411_H06_P11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_H06_P11, mRNA
sequence
Length = 449
Score = 27.6 bits (54), Expect = 2.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1 / +1
Query: 22 EDQCKAWWSELVAAS*SIFVNTTCVASTHHH 114
E C WWS+++ S ++ TCV+ H
Sbjct: 304 EKFCYRWWSQILVKSQDDYIV*TCVSLMLQH 396
>gb|CN814822.1|CN814822 HRO4502_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_H03_O06, mRNA sequence
Length = 323
Score = 27.2 bits (53), Expect = 3.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3 / -2
Query: 467 TWVTTSHPETYMPR*SDPAQC 405
TW+ P T PR*S PA C
Sbjct: 160 TWLRRQGPGTGAPR*SCPADC 98
>gb|CN817747.1|CN817747 HRO4461_D06_H11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_D06_H11, mRNA sequence
Length = 584
Score = 27.2 bits (53), Expect = 3.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1 / +1
Query: 637 VGGPCCSNHPSMC 599
VG PCC P MC
Sbjct: 58 VGPPCCRQRPQMC 96
>gb|CN818901.1|CN818901 HRO4473_C01_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_C01_XXX, mRNA sequence
Length = 635
Score = 27.2 bits (53), Expect = 3.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3 / +3
Query: 110 WWVLATHVVLTKMLQLAATSSDHQAL 33
WW+L VL +LQL A H +
Sbjct: 336 WWILFERFVLMMILQLTAVRKLHPCI 413
>gb|CN820048.1|CN820048 HRO4410_E06_I12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_E06_I12, mRNA
sequence
Length = 296
Score = 27.2 bits (53), Expect = 3.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3 / -3
Query: 467 TWVTTSHPETYMPR*SDPAQC 405
TW+ P T PR*S PA C
Sbjct: 108 TWLRRQGPGTGAPR*SCPADC 46
>gb|CN820219.1|CN820219 HRO4412_G03_N06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_G03_N06, mRNA
sequence
Length = 518
Score = 27.2 bits (53), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1 / +2
Query: 355 YVFWFSLSRASVEVDQ*FPDEAIIIST 275
YVF FSL++A+ D+ PD ++ T
Sbjct: 365 YVFSFSLNKAAPSGDERAPDGVCVLET 445
>gb|CN814842.1|CN814842 HRO4503_A11_B21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_A11_B21, mRNA sequence
Length = 667
Score = 26.7 bits (52), Expect = 4.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1 / +3
Query: 631 HPLSCSARRDRFLCRRDAGVC 693
+PL CS RD F + G+C
Sbjct: 474 YPLDCSGVRDSFTACVECGIC 536
>gb|CN820408.1|CN820408 HRO4419_A05_B09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_A05_B09, mRNA
sequence
Length = 550
Score = 26.7 bits (52), Expect = 4.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1 / +3
Query: 631 HPLSCSARRDRFLCRRDAGVC 693
+PL CS RD F + G+C
Sbjct: 258 YPLDCSGVRDSFTACVECGIC 320
>gb|CN820706.1|CN820706 HRO4416_F01_L02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_F01_L02, mRNA
sequence
Length = 688
Score = 26.7 bits (52), Expect = 4.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3 / -2
Query: 524 VMPSERTWCGGSFEQQSQ*TWVTTSHPETYMP 429
VMP + +CG S QQ++ W Y+P
Sbjct: 645 VMPHFKVFCGNSPIQQNKQLWRLRHRATLYLP 550
>emb|AX458011.1| Sequence 3 from Patent WO0246387
Length = 1323
Score = 26.7 bits (52), Expect = 4.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2 / +3
Query: 143 PGQDRPSVAAVVSSRQWP 196
PG+DRP++ A V +R+ P
Sbjct: 561 PGRDRPAIPARVRAREQP 614
>gb|CN815106.1|CN815106 HRO4505_H10_O19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_H10_O19, mRNA sequence
Length = 142
Score = 21.2 bits (40), Expect(3) = 4.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3 / -1
Query: 402 STLSWIRSSRHVSFWMRSGHP 464
ST S S + W RS HP
Sbjct: 106 STASSSSSCHQQAAWRRSSHP 44
Score = 18.5 bits (34), Expect(3) = 4.3
Identities = 5/12 (41%), Positives = 7/12 (58%)
Frame = +1 / -1
Query: 616 WNNKAHPLSCSA 651
W +HP CS+
Sbjct: 64 WRRSSHPGWCSS 29
Score = 15.7 bits (28), Expect(3) = 4.3
Identities = 4/6 (66%), Positives = 5/6 (83%)
Frame = +1 / -2
Query: 391 YPGHQH 408
+PG QH
Sbjct: 114 WPGQQH 97
>gb|CN819209.1|CN819209 HRO4451_D06_G11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_D06_G11, mRNA sequence
Length = 687
Score = 23.5 bits (45), Expect(2) = 5.2
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -3 / -3
Query: 545 FQEEHCLVMPSERTWCG 495
F EHC+ PS W G
Sbjct: 355 FCYEHCINTPSRTAWRG 305
Score = 21.7 bits (41), Expect(2) = 5.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -3 / -3
Query: 632 WALLFQSSQHVHTCRSRS 579
+ +++ SQH CR R+
Sbjct: 589 YCIMYLESQHGENCRKRA 536
>gb|CN816216.1|CN816216 HRO4518_C03_E06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_C03_E06, mRNA sequence
Length = 684
Score = 26.3 bits (51), Expect = 5.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1 / -1
Query: 562 SLPS*ELRLLHVCTCW 609
SLP+ +RL CTCW
Sbjct: 108 SLPARSIRLRTPCTCW 61
>gb|CN816302.1|CN816302 HRO4519_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_C01_F01, mRNA sequence
Length = 592
Score = 26.3 bits (51), Expect = 5.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2 / +1
Query: 117 KMMVGTCDTCGIDEDASTCSNEFRP 43
+ M DTCG S +N++RP
Sbjct: 124 RKMQANKDTCGQSSSTSAINNQYRP 198
>gb|CN816679.1|CN816679 HRO4523_E08_J15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_E08_J15, mRNA sequence
Length = 813
Score = 26.3 bits (51), Expect = 5.8
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +2 / +2
Query: 398 VINIELDQIIEACKFLDEKW 457
++++E +++I+ K +DEKW
Sbjct: 734 LVHLERNEVIQTIK*IDEKW 793
>gb|CN819964.1|CN819964 HRO4409_C06_E11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_C06_E11, mRNA
sequence
Length = 594
Score = 26.3 bits (51), Expect = 5.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1 / +2
Query: 310 DRLLH*LWKAKTRTHNY 360
D+L+ +WKA T HNY
Sbjct: 368 DKLVDEMWKAWTAKHNY 418
>gb|CN819773.1|CN819773 HRO4403_H09_P17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_H09_P17, mRNA
sequence
Length = 604
Score = 22.6 bits (43), Expect(2) = 8.3
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +1 / -1
Query: 79 VNTTCVASTHHHLR 120
V+ C+ +HHHL+
Sbjct: 148 VDLLCLTMSHHHLK 107
Score = 21.7 bits (41), Expect(2) = 8.3
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = +3 / -2
Query: 123 WMFHMVIQDKIDLRLQRWLV 182
W+FH++I + + R+L+
Sbjct: 102 WIFHLIISILSTIIISRFLI 43
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,874,867
Number of Sequences: 8143
Number of extensions: 156188
Number of successful extensions: 1185
Number of sequences better than 10.0: 22
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 236163572
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)