TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA17a05.yg.2.1
(548 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_118224.2| Arabidopsis thaliana transferase, transfer... 100 8e-034
dbj|AK118254.1| Arabidopsis thaliana At1g27120 mRNA for unk... 128 1e-029
ref|NM_102474.2| Arabidopsis thaliana transferase, transfer... 128 1e-029
gb|AV560615.1|AV560615 AV560615 Arabidopsis thaliana green ... 126 3e-029
ref|NM_125657.3| Arabidopsis thaliana galactosyltransferase... 91 5e-029
emb|BX831498.1|CNS0A1N1 Arabidopsis thaliana Full-length cD... 91 5e-029
gb|AI999181.1|AI999181 701554812 A. thaliana, Columbia Col-... 91 6e-029
gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis tha... 124 2e-028
gb|AV544142.1|AV544142 AV544142 Arabidopsis thaliana roots ... 91 6e-028
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 100 9e-028
emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosom... 100 1e-027
emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome... 100 1e-027
emb|AL083949.1|CNS00P1R Arabidopsis thaliana genome survey ... 100 1e-027
gb|AY090451.1| Arabidopsis thaliana At1g74800/F25A4_38 mRNA... 90 1e-027
ref|NM_106138.2| Arabidopsis thaliana transferase, transfer... 90 1e-027
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 124 2e-027
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 124 2e-027
emb|CQ804810.1| Sequence 1221 from Patent WO2004035798 91 2e-027
dbj|AB020751.1| Arabidopsis thaliana genomic DNA, chromosom... 91 2e-025
gb|AV563349.1|AV563349 AV563349 Arabidopsis thaliana green ... 90 8e-025
gb|AU230384.1|AU230384 AU230384 RAFL19 Arabidopsis thaliana... 96 3e-023
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 90 5e-023
gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F... 90 6e-023
gb|BP646017.1|BP646017 BP646017 RAFL19 Arabidopsis thaliana... 90 7e-021
>ref|NM_118224.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT4G21060 mRNA,
complete cds
Length = 2226
Score = 100 bits (214), Expect(2) = 8e-034
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -3 / +1
Query: 426 PVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
PV+Y HSW+FCQ+GC NY+TAHYQSP QM+CLW+ L GR CCN+R*
Sbjct: 2080 PVEYSHSWKFCQYGCTLNYYTAHYQSPSQMMCLWDNLLKGRPQCCNFR* 2226
Score = 64.8 bits (135), Expect(2) = 8e-034
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = -3 / +1
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNAS 430
+IS+ IA+ + S+++ H LRLFKMEDVSMG+WVE +NAS
Sbjct: 1957 IISSNIAKYIVSQNSRHKLRLFKMEDVSMGLWVEQFNAS 2073
>dbj|AK118254.1| Arabidopsis thaliana At1g27120 mRNA for unknown protein, complete
cds, clone: RAFL19-55-I21
Length = 2391
Score = 128 bits (275), Expect(2) = 1e-029
Identities = 46/77 (59%), Positives = 60/77 (77%)
Frame = -3 / +3
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYF 367
++S +A+ + LRLFKMEDVSMGMWVE +N + PV VHS +FCQFGC+++YF
Sbjct: 1965 ILSYDVAKFIVDDFEQKRLRLFKMEDVSMGMWVEKFNETRPVAVVHSLKFCQFGCIEDYF 2144
Query: 366 TAHYQSPRQMLCLWEKL 316
TAHYQSPRQM+C+W+KL
Sbjct: 2145 TAHYQSPRQMICMWDKL 2195
Score = 23.1 bits (44), Expect(2) = 1e-029
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +3
Query: 309 GRAHCCNYR*H 277
G+ CCN R*H
Sbjct: 2205 GKPQCCNMR*H 2237
>ref|NM_102474.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G27120 mRNA,
complete cds
Length = 2391
Score = 128 bits (275), Expect(2) = 1e-029
Identities = 46/77 (59%), Positives = 60/77 (77%)
Frame = -3 / +3
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYF 367
++S +A+ + LRLFKMEDVSMGMWVE +N + PV VHS +FCQFGC+++YF
Sbjct: 1965 ILSYDVAKFIVDDFEQKRLRLFKMEDVSMGMWVEKFNETRPVAVVHSLKFCQFGCIEDYF 2144
Query: 366 TAHYQSPRQMLCLWEKL 316
TAHYQSPRQM+C+W+KL
Sbjct: 2145 TAHYQSPRQMICMWDKL 2195
Score = 23.1 bits (44), Expect(2) = 1e-029
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +3
Query: 309 GRAHCCNYR*H 277
G+ CCN R*H
Sbjct: 2205 GKPQCCNMR*H 2237
>gb|AV560615.1|AV560615 AV560615 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ137f05F 3', mRNA sequence
Length = 350
Score = 126 bits (270), Expect(2) = 3e-029
Identities = 46/75 (61%), Positives = 58/75 (77%)
Frame = -3 / -1
Query: 540 SAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTA 361
S +A+ + LRLFKMEDVSMGMWVE +N + PV VHS +FCQFGC+++YFTA
Sbjct: 350 SYDVAKFIVDDFEQKRLRLFKMEDVSMGMWVEKFNETRPVAVVHSLKFCQFGCIEDYFTA 171
Query: 360 HYQSPRQMLCLWEKL 316
HYQSPRQM+C+W+KL
Sbjct: 170 HYQSPRQMICMWDKL 126
Score = 23.1 bits (44), Expect(2) = 3e-029
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / -1
Query: 309 GRAHCCNYR*H 277
G+ CCN R*H
Sbjct: 116 GKPQCCNMR*H 84
>ref|NM_125657.3| Arabidopsis thaliana galactosyltransferase/ transferase, transferring
hexosyl groups AT5G62620 mRNA, complete cds
Length = 2589
Score = 91.3 bits (193), Expect(3) = 5e-029
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -3 / +2
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y+HS RFCQFGC++NY TAHYQSPRQM+CLW+KL
Sbjct: 2270 NGTKPVDYIHSLRFCQFGCIENYLTAHYQSPRQMICLWDKL 2392
Score = 52.8 bits (109), Expect(3) = 5e-029
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -3 / +2
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYN 436
++S I+R + H LR+FKMEDVS+GMWVE +N
Sbjct: 2159 ILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFN 2269
Score = 23.1 bits (44), Expect(3) = 5e-029
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +2
Query: 309 GRAHCCNYR*H 277
G+ CCN R*H
Sbjct: 2402 GKPQCCNMR*H 2434
>emb|BX831498.1|CNS0A1N1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH11ZA04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2581
Score = 91.3 bits (193), Expect(3) = 5e-029
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -3 / +2
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y+HS RFCQFGC++NY TAHYQSPRQM+CLW+KL
Sbjct: 2270 NGTKPVDYIHSLRFCQFGCIENYLTAHYQSPRQMICLWDKL 2392
Score = 52.8 bits (109), Expect(3) = 5e-029
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -3 / +2
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYN 436
++S I+R + H LR+FKMEDVS+GMWVE +N
Sbjct: 2159 ILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFN 2269
Score = 23.1 bits (44), Expect(3) = 5e-029
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +2
Query: 309 GRAHCCNYR*H 277
G+ CCN R*H
Sbjct: 2402 GKPQCCNMR*H 2434
>gb|AI999181.1|AI999181 701554812 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701554812, mRNA sequence
Length = 566
Score = 91.3 bits (193), Expect(3) = 6e-029
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -3 / -2
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y+HS RFCQFGC++NY TAHYQSPRQM+CLW+KL
Sbjct: 319 NGTKPVDYIHSLRFCQFGCIENYLTAHYQSPRQMICLWDKL 197
Score = 52.8 bits (109), Expect(3) = 6e-029
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -3 / -2
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYN 436
++S I+R + H LR+FKMEDVS+GMWVE +N
Sbjct: 430 ILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFN 320
Score = 23.1 bits (44), Expect(3) = 6e-029
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / -2
Query: 309 GRAHCCNYR*H 277
G+ CCN R*H
Sbjct: 187 GKPQCCNMR*H 155
>gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I,
complete sequence
Length = 111566
Score = 124 bits (266), Expect(2) = 2e-028
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = -3 / +1
Query: 495 SLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
SL+LFKMEDVSMGMWVE +N + PV VHS +FCQFGC+++YFTAHYQSPRQM+C+W+KL
Sbjct: 65326 SLQLFKMEDVSMGMWVEKFNETRPVAVVHSLKFCQFGCIEDYFTAHYQSPRQMICMWDKL 65505
Score = 23.1 bits (44), Expect(2) = 2e-028
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +1
Query: 309 GRAHCCNYR*H 277
G+ CCN R*H
Sbjct: 65515 GKPQCCNMR*H 65547
>gb|AV544142.1|AV544142 AV544142 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ34e04F 3', mRNA sequence
Length = 635
Score = 91.3 bits (193), Expect(2) = 6e-028
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = -3 / -2
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N S PV Y HS RFCQFGCV+NY+TAHYQSPRQM+CLW+KL
Sbjct: 382 NTSNPVDYRHSLRFCQFGCVENYYTAHYQSPRQMICLWDKL 260
Score = 54.7 bits (113), Expect(2) = 6e-028
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -3 / -2
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDY 439
V+S+ IAR + + H LRLFKMEDVS+GMWVE +
Sbjct: 493 VLSSDIARFIVDKFERHKLRLFKMEDVSVGMWVEHF 386
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 100 bits (214), Expect(2) = 9e-028
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -3 / +2
Query: 426 PVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
PV+Y HSW+FCQ+GC NY+TAHYQSP QM+CLW+ L GR CCN+R*
Sbjct: 7157474 PVEYSHSWKFCQYGCTLNYYTAHYQSPSQMMCLWDNLLKGRPQCCNFR* 7157620
Score = 44.1 bits (90), Expect(2) = 9e-028
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 489 RLFKMEDVSMGMWVEDYNAS 430
+LFKMEDVSMG+WVE +NAS
Sbjct: 7157408 QLFKMEDVSMGLWVEQFNAS 7157467
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
Length = 198715
Score = 100 bits (214), Expect(2) = 1e-027
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -3 / +2
Query: 426 PVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
PV+Y HSW+FCQ+GC NY+TAHYQSP QM+CLW+ L GR CCN+R*
Sbjct: 56291 PVEYSHSWKFCQYGCTLNYYTAHYQSPSQMMCLWDNLLKGRPQCCNFR* 56437
Score = 44.1 bits (90), Expect(2) = 1e-027
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 489 RLFKMEDVSMGMWVEDYNAS 430
+LFKMEDVSMG+WVE +NAS
Sbjct: 56225 QLFKMEDVSMGLWVEQFNAS 56284
>emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome 4, BAC clone T13K14 (ESSA project)
Length = 91570
Score = 100 bits (214), Expect(2) = 1e-027
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -3 / +2
Query: 426 PVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
PV+Y HSW+FCQ+GC NY+TAHYQSP QM+CLW+ L GR CCN+R*
Sbjct: 83813 PVEYSHSWKFCQYGCTLNYYTAHYQSPSQMMCLWDNLLKGRPQCCNFR* 83959
Score = 44.1 bits (90), Expect(2) = 1e-027
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 489 RLFKMEDVSMGMWVEDYNAS 430
+LFKMEDVSMG+WVE +NAS
Sbjct: 83747 QLFKMEDVSMGLWVEQFNAS 83806
>emb|AL083949.1|CNS00P1R Arabidopsis thaliana genome survey sequence SP6 end of BAC F7O10 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 480
Score = 100 bits (214), Expect(2) = 1e-027
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -3 / +2
Query: 426 PVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
PV+Y HSW+FCQ+GC NY+TAHYQSP QM+CLW+ L GR CCN+R*
Sbjct: 182 PVEYSHSWKFCQYGCTLNYYTAHYQSPSQMMCLWDNLLKGRPQCCNFR* 328
Score = 44.1 bits (90), Expect(2) = 1e-027
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 489 RLFKMEDVSMGMWVEDYNAS 430
+LFKMEDVSMG+WVE +NAS
Sbjct: 116 QLFKMEDVSMGLWVEQFNAS 175
>gb|AY090451.1| Arabidopsis thaliana At1g74800/F25A4_38 mRNA, complete cds
Length = 2391
Score = 90.0 bits (190), Expect(2) = 1e-027
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -3 / +3
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y HS RFCQFGCV+NY+TAHYQSPRQM+CLW+KL
Sbjct: 1977 NTTNPVDYRHSLRFCQFGCVENYYTAHYQSPRQMICLWDKL 2099
Score = 54.7 bits (113), Expect(2) = 1e-027
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -3 / +3
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDY 439
V+S+ IAR + + H LRLFKMEDVS+GMWVE +
Sbjct: 1866 VLSSDIARFIVDKFERHKLRLFKMEDVSVGMWVEHF 1973
>ref|NM_106138.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G74800 mRNA,
complete cds
Length = 2391
Score = 90.0 bits (190), Expect(2) = 1e-027
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -3 / +3
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y HS RFCQFGCV+NY+TAHYQSPRQM+CLW+KL
Sbjct: 1977 NTTNPVDYRHSLRFCQFGCVENYYTAHYQSPRQMICLWDKL 2099
Score = 54.7 bits (113), Expect(2) = 1e-027
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -3 / +3
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDY 439
V+S+ IAR + + H LRLFKMEDVS+GMWVE +
Sbjct: 1866 VLSSDIARFIVDKFERHKLRLFKMEDVSVGMWVEHF 1973
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 124 bits (266), Expect = 2e-027
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = -3 / +3
Query: 495 SLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
SL+LFKMEDVSMGMWVE +N + PV VHS +FCQFGC+++YFTAHYQSPRQM+C+W+KL
Sbjct: 9432474 SLQLFKMEDVSMGMWVEKFNETRPVAVVHSLKFCQFGCIEDYFTAHYQSPRQMICMWDKL 9432653
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 124 bits (266), Expect = 2e-027
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = -3 / +1
Query: 495 SLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
SL+LFKMEDVSMGMWVE +N + PV VHS +FCQFGC+++YFTAHYQSPRQM+C+W+KL
Sbjct: 9423679 SLQLFKMEDVSMGMWVEKFNETRPVAVVHSLKFCQFGCIEDYFTAHYQSPRQMICMWDKL 9423858
>emb|CQ804810.1| Sequence 1221 from Patent WO2004035798
Length = 2046
Score = 91.3 bits (193), Expect(2) = 2e-027
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -3 / +1
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y+HS RFCQFGC++NY TAHYQSPRQM+CLW+KL
Sbjct: 1885 NGTKPVDYIHSLRFCQFGCIENYLTAHYQSPRQMICLWDKL 2007
Score = 52.8 bits (109), Expect(2) = 2e-027
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -3 / +1
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYN 436
++S I+R + H LR+FKMEDVS+GMWVE +N
Sbjct: 1774 ILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFN 1884
>dbj|AB020751.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG21
Length = 55151
Score = 91.3 bits (193), Expect(3) = 2e-025
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -3 / +3
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y+HS RFCQFGC++NY TAHYQSPRQM+CLW+KL
Sbjct: 9390 NGTKPVDYIHSLRFCQFGCIENYLTAHYQSPRQMICLWDKL 9512
Score = 40.9 bits (83), Expect(3) = 2e-025
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = -3 / +3
Query: 492 LRLFKMEDVSMGMWVEDYN 436
L++FKMEDVS+GMWVE +N
Sbjct: 9333 LQMFKMEDVSVGMWVEQFN 9389
Score = 23.1 bits (44), Expect(3) = 2e-025
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +3
Query: 309 GRAHCCNYR*H 277
G+ CCN R*H
Sbjct: 9522 GKPQCCNMR*H 9554
>gb|AV563349.1|AV563349 AV563349 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ185g10F 3', mRNA sequence
Length = 499
Score = 90.0 bits (190), Expect(2) = 8e-025
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -3 / -3
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y HS RFCQFGCV+NY+TAHYQSPRQM+CLW+KL
Sbjct: 413 NTTNPVDYRHSLRFCQFGCVENYYTAHYQSPRQMICLWDKL 291
Score = 45.5 bits (93), Expect(2) = 8e-025
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3 / -3
Query: 519 VASRHTNHSLRLFKMEDVSMGMWVEDY 439
+ + H LRLFKMEDVS+GMWVE +
Sbjct: 497 IVDKFERHKLRLFKMEDVSVGMWVEHF 417
>gb|AU230384.1|AU230384 AU230384 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-55-I21 3',
mRNA sequence
Length = 431
Score = 95.9 bits (203), Expect(2) = 3e-023
Identities = 31/48 (64%), Positives = 41/48 (85%)
Frame = -3 / -3
Query: 459 GMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
GMWVE +N + P+ VHS +FCQFGC+++YFTAHYQSP QM+C+W+KL
Sbjct: 336 GMWVEKFNETRPLAVVHSLKFCQFGCIEDYFTAHYQSPPQMICMWDKL 193
Score = 34.1 bits (68), Expect(2) = 3e-023
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3 / -2
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMG 457
++S +A+ + LRLFKMEDVSMG
Sbjct: 424 ILSYDVAKFIVDDFEQKRLRLFKMEDVSMG 335
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 90.0 bits (190), Expect(2) = 5e-023
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -3 / -3
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y HS RFCQFGCV+NY+TAHYQSPRQM+CLW+KL
Sbjct: 12343701 NTTNPVDYRHSLRFCQFGCVENYYTAHYQSPRQMICLWDKL 12343579
Score = 39.1 bits (79), Expect(2) = 5e-023
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -3 / -3
Query: 498 HSLRLFKMEDVSMGMWVEDY 439
H +LFKMEDVS+GMWVE +
Sbjct: 12343764 HIYQLFKMEDVSVGMWVEHF 12343705
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence
Length = 115721
Score = 90.0 bits (190), Expect(2) = 6e-023
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -3 / +3
Query: 438 NASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKL 316
N + PV Y HS RFCQFGCV+NY+TAHYQSPRQM+CLW+KL
Sbjct: 72648 NTTNPVDYRHSLRFCQFGCVENYYTAHYQSPRQMICLWDKL 72770
Score = 39.1 bits (79), Expect(2) = 6e-023
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -3 / +3
Query: 498 HSLRLFKMEDVSMGMWVEDY 439
H +LFKMEDVS+GMWVE +
Sbjct: 72585 HIYQLFKMEDVSVGMWVEHF 72644
>gb|BP646017.1|BP646017 BP646017 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-70-L19 3',
mRNA sequence
Length = 393
Score = 90.0 bits (190), Expect(3) = 7e-021
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = -3 / -2
Query: 459 GMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLW 325
GMWVE +N + PV HS +FCQFGC+++YFTAHYQSP QM+C+W
Sbjct: 338 GMWVEKFNETRPVAVFHSLKFCQFGCIEDYFTAHYQSPPQMICMW 204
Score = 27.2 bits (53), Expect(3) = 7e-021
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3 / -3
Query: 492 LRLFKMEDVSM 460
LRLFKMEDVSM
Sbjct: 370 LRLFKMEDVSM 338
Score = 21.2 bits (40), Expect(3) = 7e-021
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -3 / -1
Query: 312 AGRAHCCNYR*H 277
A + CCN R*H
Sbjct: 189 ARKPQCCNMR*H 154
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,164,222,003
Number of Sequences: 1013581
Number of extensions: 16847275
Number of successful extensions: 237960
Number of sequences better than 1.0e-020: 29
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 31398633545
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)