TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH4a02.xg.2.1
(526 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 100 3e-035
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 100 3e-035
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 100 3e-035
dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alph... 100 3e-035
dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alph... 100 3e-035
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 100 8e-035
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 100 3e-034
gb|AY063925.1| Arabidopsis thaliana putative arabinosidase ... 98 9e-030
ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on ... 98 9e-030
gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown pr... 98 9e-030
gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 98 9e-030
gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flower... 97 1e-029
gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome II... 65 2e-026
gb|H37473.1|H37473 15602 Lambda-PRL2 Arabidopsis thaliana c... 88 3e-022
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 100 bits (215), Expect(3) = 3e-035
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1 / +2
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS YG P+YW+ FF +SS ATL ST+
Sbjct: 1724 KNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1903
Query: 235 QLPNYDQLVTSAITWNNPHD 294
+ + + ++ NN D
Sbjct: 1904 KGNSTSLVASAISWKNNGKD 1963
Score = 82.2 bits (174), Expect(3) = 5e-026
Identities = 44/71 (61%), Positives = 48/71 (67%)
Frame = -3 / -1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S K Q* G P ELKTIASGFH S FT+SGA LAIST SLF S PMRN
Sbjct: 1884 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 1705
Query: 35 AASAKAAISVP 3
AASA+ A +P
Sbjct: 1704 AASAREARRLP 1672
Score = 49.4 bits (102), Expect(3) = 3e-035
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +2
Query: 394 GSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
GS KTVLTS + DENSF QP+KVVP S + A + M V+L
Sbjct: 2057 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVL 2182
Score = 43.0 bits (88), Expect(3) = 5e-026
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3 / -1
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*IS 378
L+ GTT SGC KEFSS + +V TVF DP I+
Sbjct: 2142 LSCGTTFSGCEKEFSSITLVEVSTVFFDPETLIT 2041
Score = 38.0 bits (77), Expect(3) = 3e-035
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1 / +2
Query: 289 HDGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIK 405
++G Y++IK VNFG+ + ++ + VTGL+ ++ K
Sbjct: 1949 NNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSK 2065
Score = 31.2 bits (62), Expect(3) = 5e-026
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3 / -1
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFP 294
SNPVT+ + L PKFT F+ M* P
Sbjct: 2034 SNPVTNTCIFSELAPKFTAFMRM*SLP 1954
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 100 bits (215), Expect(3) = 3e-035
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1 / +3
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS YG P+YW+ FF +SS ATL ST+
Sbjct: 1551 KNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1730
Query: 235 QLPNYDQLVTSAITWNNPHD 294
+ + + ++ NN D
Sbjct: 1731 KGNSTSLVASAISWKNNGKD 1790
Score = 82.2 bits (174), Expect(3) = 5e-026
Identities = 44/71 (61%), Positives = 48/71 (67%)
Frame = -3 / -1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S K Q* G P ELKTIASGFH S FT+SGA LAIST SLF S PMRN
Sbjct: 1711 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 1532
Query: 35 AASAKAAISVP 3
AASA+ A +P
Sbjct: 1531 AASAREARRLP 1499
Score = 49.4 bits (102), Expect(3) = 3e-035
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +3
Query: 394 GSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
GS KTVLTS + DENSF QP+KVVP S + A + M V+L
Sbjct: 1884 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVL 2009
Score = 43.0 bits (88), Expect(3) = 5e-026
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3 / -1
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*IS 378
L+ GTT SGC KEFSS + +V TVF DP I+
Sbjct: 1969 LSCGTTFSGCEKEFSSITLVEVSTVFFDPETLIT 1868
Score = 38.0 bits (77), Expect(3) = 3e-035
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1 / +3
Query: 289 HDGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIK 405
++G Y++IK VNFG+ + ++ + VTGL+ ++ K
Sbjct: 1776 NNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSK 1892
Score = 31.2 bits (62), Expect(3) = 5e-026
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3 / -1
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFP 294
SNPVT+ + L PKFT F+ M* P
Sbjct: 1861 SNPVTNTCIFSELAPKFTAFMRM*SLP 1781
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 100 bits (215), Expect(3) = 3e-035
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS YG P+YW+ FF +SS ATL ST+
Sbjct: 1477 KNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1656
Query: 235 QLPNYDQLVTSAITWNNPHD 294
+ + + ++ NN D
Sbjct: 1657 KGNSTSLVASAISWKNNGKD 1716
Score = 82.2 bits (174), Expect(3) = 5e-026
Identities = 44/71 (61%), Positives = 48/71 (67%)
Frame = -3 / -2
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S K Q* G P ELKTIASGFH S FT+SGA LAIST SLF S PMRN
Sbjct: 1637 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 1458
Query: 35 AASAKAAISVP 3
AASA+ A +P
Sbjct: 1457 AASAREARRLP 1425
Score = 49.4 bits (102), Expect(3) = 3e-035
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +1
Query: 394 GSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
GS KTVLTS + DENSF QP+KVVP S + A + M V+L
Sbjct: 1810 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVL 1935
Score = 43.0 bits (88), Expect(3) = 5e-026
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3 / -2
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*IS 378
L+ GTT SGC KEFSS + +V TVF DP I+
Sbjct: 1895 LSCGTTFSGCEKEFSSITLVEVSTVFFDPETLIT 1794
Score = 38.0 bits (77), Expect(3) = 3e-035
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1 / +1
Query: 289 HDGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIK 405
++G Y++IK VNFG+ + ++ + VTGL+ ++ K
Sbjct: 1702 NNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSK 1818
Score = 31.2 bits (62), Expect(3) = 5e-026
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3 / -2
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFP 294
SNPVT+ + L PKFT F+ M* P
Sbjct: 1787 SNPVTNTCIFSELAPKFTAFMRM*SLP 1707
>dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL24-02-J05
Length = 1328
Score = 100 bits (215), Expect(3) = 3e-035
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS YG P+YW+ FF +SS ATL ST+
Sbjct: 619 KNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 798
Query: 235 QLPNYDQLVTSAITWNNPHD 294
+ + + ++ NN D
Sbjct: 799 KGNSTSLVASAISWKNNGKD 858
Score = 82.2 bits (174), Expect(3) = 5e-026
Identities = 44/71 (61%), Positives = 48/71 (67%)
Frame = -3 / -1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S K Q* G P ELKTIASGFH S FT+SGA LAIST SLF S PMRN
Sbjct: 779 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 600
Query: 35 AASAKAAISVP 3
AASA+ A +P
Sbjct: 599 AASAREARRLP 567
Score = 49.4 bits (102), Expect(3) = 3e-035
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +1
Query: 394 GSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
GS KTVLTS + DENSF QP+KVVP S + A + M V+L
Sbjct: 952 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVL 1077
Score = 43.0 bits (88), Expect(3) = 5e-026
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3 / -1
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*IS 378
L+ GTT SGC KEFSS + +V TVF DP I+
Sbjct: 1037 LSCGTTFSGCEKEFSSITLVEVSTVFFDPETLIT 936
Score = 38.0 bits (77), Expect(3) = 3e-035
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1 / +1
Query: 289 HDGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIK 405
++G Y++IK VNFG+ + ++ + VTGL+ ++ K
Sbjct: 844 NNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSK 960
Score = 31.2 bits (62), Expect(3) = 5e-026
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3 / -1
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFP 294
SNPVT+ + L PKFT F+ M* P
Sbjct: 929 SNPVTNTCIFSELAPKFTAFMRM*SLP 849
>dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL22-21-H07
Length = 993
Score = 100 bits (215), Expect(3) = 3e-035
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1 / +2
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS YG P+YW+ FF +SS ATL ST+
Sbjct: 284 KNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 463
Query: 235 QLPNYDQLVTSAITWNNPHD 294
+ + + ++ NN D
Sbjct: 464 KGNSTSLVASAISWKNNGKD 523
Score = 82.2 bits (174), Expect(3) = 5e-026
Identities = 44/71 (61%), Positives = 48/71 (67%)
Frame = -3 / -1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S K Q* G P ELKTIASGFH S FT+SGA LAIST SLF S PMRN
Sbjct: 444 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 265
Query: 35 AASAKAAISVP 3
AASA+ A +P
Sbjct: 264 AASAREARRLP 232
Score = 49.4 bits (102), Expect(3) = 3e-035
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +2
Query: 394 GSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
GS KTVLTS + DENSF QP+KVVP S + A + M V+L
Sbjct: 617 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVL 742
Score = 43.0 bits (88), Expect(3) = 5e-026
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3 / -1
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*IS 378
L+ GTT SGC KEFSS + +V TVF DP I+
Sbjct: 702 LSCGTTFSGCEKEFSSITLVEVSTVFFDPETLIT 601
Score = 38.0 bits (77), Expect(3) = 3e-035
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1 / +2
Query: 289 HDGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIK 405
++G Y++IK VNFG+ + ++ + VTGL+ ++ K
Sbjct: 509 NNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSK 625
Score = 31.2 bits (62), Expect(3) = 5e-026
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3 / -1
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFP 294
SNPVT+ + L PKFT F+ M* P
Sbjct: 594 SNPVTNTCIFSELAPKFTAFMRM*SLP 514
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 99.5 bits (212), Expect(3) = 8e-035
Identities = 42/80 (52%), Positives = 55/80 (68%)
Frame = +1 / +2
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+V+MAS APL VN ND+RWNPDAIVFNS YG P+YW+ FF +SS ATL ST+
Sbjct: 1685 KNSDIVDMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1864
Query: 235 QLPNYDQLVTSAITWNNPHD 294
+ + + ++ NN D
Sbjct: 1865 KGNSTSLVASAISWKNNGKD 1924
Score = 80.8 bits (171), Expect(3) = 1e-025
Identities = 43/71 (60%), Positives = 48/71 (67%)
Frame = -3 / -3
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S K Q* G P ELKTIASGFH S FT+SGA LA+ST SLF S PMRN
Sbjct: 1845 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAMSTMSLFFSRPMRN 1666
Query: 35 AASAKAAISVP 3
AASA+ A +P
Sbjct: 1665 AASAREARRLP 1633
Score = 49.4 bits (102), Expect(3) = 8e-035
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +2
Query: 394 GSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
GS KTVLTS + DENSF QP+KVVP S + A + M V+L
Sbjct: 2018 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVL 2143
Score = 43.0 bits (88), Expect(3) = 1e-025
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3 / -3
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*IS 378
L+ GTT SGC KEFSS + +V TVF DP I+
Sbjct: 2103 LSCGTTFSGCEKEFSSITLVEVSTVFFDPETLIT 2002
Score = 38.0 bits (77), Expect(3) = 8e-035
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1 / +2
Query: 289 HDGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIK 405
++G Y++IK VNFG+ + ++ + VTGL+ ++ K
Sbjct: 1910 NNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSK 2026
Score = 31.2 bits (62), Expect(3) = 1e-025
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3 / -3
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFP 294
SNPVT+ + L PKFT F+ M* P
Sbjct: 1995 SNPVTNTCIFSELAPKFTAFMRM*SLP 1915
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 100 bits (215), Expect(3) = 3e-034
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS YG P+YW+ FF +SS ATL ST+
Sbjct: 1726 KNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1905
Query: 235 QLPNYDQLVTSAITWNNPHD 294
+ + + ++ NN D
Sbjct: 1906 KGNSTSLVASAISWKNNGKD 1965
Score = 82.2 bits (174), Expect(3) = 5e-026
Identities = 44/71 (61%), Positives = 48/71 (67%)
Frame = -3 / -1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S K Q* G P ELKTIASGFH S FT+SGA LAIST SLF S PMRN
Sbjct: 1886 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 1707
Query: 35 AASAKAAISVP 3
AASA+ A +P
Sbjct: 1706 AASAREARRLP 1674
Score = 46.2 bits (95), Expect(3) = 3e-034
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +1 / +1
Query: 394 GSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGV 513
GS KTVLTS + DENSF QP+KVVP S + A + M V
Sbjct: 2059 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTV 2178
Score = 43.0 bits (88), Expect(3) = 5e-026
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3 / -1
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*IS 378
L+ GTT SGC KEFSS + +V TVF DP I+
Sbjct: 2144 LSCGTTFSGCEKEFSSITLVEVSTVFFDPETLIT 2043
Score = 38.0 bits (77), Expect(3) = 3e-034
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1 / +1
Query: 289 HDGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIK 405
++G Y++IK VNFG+ + ++ + VTGL+ ++ K
Sbjct: 1951 NNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSK 2067
Score = 31.2 bits (62), Expect(3) = 5e-026
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3 / -1
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFP 294
SNPVT+ + L PKFT F+ M* P
Sbjct: 2036 SNPVTNTCIFSELAPKFTAFMRM*SLP 1956
>gb|AY063925.1| Arabidopsis thaliana putative arabinosidase (At5g26120) mRNA,
complete cds
Length = 2219
Score = 97.7 bits (208), Expect(3) = 9e-030
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEM S APL VN ND+RW PDAIVFNS YG P+YW+ HFF +SS ATL ST+
Sbjct: 1549 KNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNSTL 1728
Query: 235 Q 237
+
Sbjct: 1729 K 1731
Score = 78.6 bits (166), Expect(3) = 8e-023
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3 / -1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S+KKC Q* G P ELKTIASG HL S T+ GA L IST SLF S P R
Sbjct: 1709 VAPLDSVKKCWTQ*LGVPYR*DELKTIASGIHLLSFVLTKRGA*LTISTMSLFFSKPRRK 1530
Query: 35 AASAKAAISVP 3
AAS +AA +P
Sbjct: 1529 AASPRAAKRLP 1497
Score = 40.8 bits (83), Expect(3) = 9e-030
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1 / +1
Query: 346 SLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVPAAS 480
S+N+ V + +GS K VLTS + DENSF P+ +VP S
Sbjct: 1825 SVNLKVAVTGLMAKFYGSKKKVLTSASVMDENSFSNPNMIVPQES 1959
Score = 33.9 bits (68), Expect(3) = 8e-023
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3 / -1
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDP 393
L+ GT + G KEFSS + DV T F+DP
Sbjct: 1958 LSCGTIIFGFEKEFSSITLADVSTFFLDP 1872
Score = 33.0 bits (66), Expect(3) = 8e-023
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / -1
Query: 371 NPVTDIFRLTALLPKFTTFIFM*VFP 294
NPVT FR T PKFT I M* P
Sbjct: 1856 NPVTATFRFTDCSPKFTALICM*SLP 1779
Score = 31.2 bits (62), Expect(3) = 9e-030
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3 / +3
Query: 285 PT*WEHLHENKGCKFWK 335
P W+ LH ++GCK W+
Sbjct: 1770 PNQWQRLHTDQGCKLWR 1820
>ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on glycosyl bonds AT5G26120
mRNA, complete cds
Length = 2208
Score = 97.7 bits (208), Expect(3) = 9e-030
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEM S APL VN ND+RW PDAIVFNS YG P+YW+ HFF +SS ATL ST+
Sbjct: 1549 KNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNSTL 1728
Query: 235 Q 237
+
Sbjct: 1729 K 1731
Score = 78.6 bits (166), Expect(3) = 8e-023
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3 / -2
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S+KKC Q* G P ELKTIASG HL S T+ GA L IST SLF S P R
Sbjct: 1709 VAPLDSVKKCWTQ*LGVPYR*DELKTIASGIHLLSFVLTKRGA*LTISTMSLFFSKPRRK 1530
Query: 35 AASAKAAISVP 3
AAS +AA +P
Sbjct: 1529 AASPRAAKRLP 1497
Score = 40.8 bits (83), Expect(3) = 9e-030
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1 / +1
Query: 346 SLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVPAAS 480
S+N+ V + +GS K VLTS + DENSF P+ +VP S
Sbjct: 1825 SVNLKVAVTGLMAKFYGSKKKVLTSASVMDENSFSNPNMIVPQES 1959
Score = 33.9 bits (68), Expect(3) = 8e-023
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3 / -2
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDP 393
L+ GT + G KEFSS + DV T F+DP
Sbjct: 1958 LSCGTIIFGFEKEFSSITLADVSTFFLDP 1872
Score = 33.0 bits (66), Expect(3) = 8e-023
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / -2
Query: 371 NPVTDIFRLTALLPKFTTFIFM*VFP 294
NPVT FR T PKFT I M* P
Sbjct: 1856 NPVTATFRFTDCSPKFTALICM*SLP 1779
Score = 31.2 bits (62), Expect(3) = 9e-030
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3 / +3
Query: 285 PT*WEHLHENKGCKFWK 335
P W+ LH ++GCK W+
Sbjct: 1770 PNQWQRLHTDQGCKLWR 1820
>gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown protein (At5g26120) mRNA,
complete cds
Length = 2055
Score = 97.7 bits (208), Expect(3) = 9e-030
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEM S APL VN ND+RW PDAIVFNS YG P+YW+ HFF +SS ATL ST+
Sbjct: 1474 KNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNSTL 1653
Query: 235 Q 237
+
Sbjct: 1654 K 1656
Score = 78.6 bits (166), Expect(3) = 8e-023
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3 / -2
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S+KKC Q* G P ELKTIASG HL S T+ GA L IST SLF S P R
Sbjct: 1634 VAPLDSVKKCWTQ*LGVPYR*DELKTIASGIHLLSFVLTKRGA*LTISTMSLFFSKPRRK 1455
Query: 35 AASAKAAISVP 3
AAS +AA +P
Sbjct: 1454 AASPRAAKRLP 1422
Score = 40.8 bits (83), Expect(3) = 9e-030
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1 / +1
Query: 346 SLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVPAAS 480
S+N+ V + +GS K VLTS + DENSF P+ +VP S
Sbjct: 1750 SVNLKVAVTGLMAKFYGSKKKVLTSASVMDENSFSNPNMIVPQES 1884
Score = 33.9 bits (68), Expect(3) = 8e-023
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3 / -2
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDP 393
L+ GT + G KEFSS + DV T F+DP
Sbjct: 1883 LSCGTIIFGFEKEFSSITLADVSTFFLDP 1797
Score = 33.0 bits (66), Expect(3) = 8e-023
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / -2
Query: 371 NPVTDIFRLTALLPKFTTFIFM*VFP 294
NPVT FR T PKFT I M* P
Sbjct: 1781 NPVTATFRFTDCSPKFTALICM*SLP 1704
Score = 31.2 bits (62), Expect(3) = 9e-030
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3 / +3
Query: 285 PT*WEHLHENKGCKFWK 335
P W+ LH ++GCK W+
Sbjct: 1695 PNQWQRLHTDQGCKLWR 1745
>gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD2) mRNA,
complete cds
Length = 2043
Score = 97.7 bits (208), Expect(3) = 9e-030
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +1 / +3
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEM S APL VN ND+RW PDAIVFNS YG P+YW+ HFF +SS ATL ST+
Sbjct: 1479 KNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNSTL 1658
Query: 235 Q 237
+
Sbjct: 1659 K 1661
Score = 78.6 bits (166), Expect(3) = 8e-023
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3 / -3
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S+KKC Q* G P ELKTIASG HL S T+ GA L IST SLF S P R
Sbjct: 1639 VAPLDSVKKCWTQ*LGVPYR*DELKTIASGIHLLSFVLTKRGA*LTISTMSLFFSKPRRK 1460
Query: 35 AASAKAAISVP 3
AAS +AA +P
Sbjct: 1459 AASPRAAKRLP 1427
Score = 40.8 bits (83), Expect(3) = 9e-030
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1 / +3
Query: 346 SLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVPAAS 480
S+N+ V + +GS K VLTS + DENSF P+ +VP S
Sbjct: 1755 SVNLKVAVTGLMAKFYGSKKKVLTSASVMDENSFSNPNMIVPQES 1889
Score = 33.9 bits (68), Expect(3) = 8e-023
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3 / -3
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDP 393
L+ GT + G KEFSS + DV T F+DP
Sbjct: 1888 LSCGTIIFGFEKEFSSITLADVSTFFLDP 1802
Score = 33.0 bits (66), Expect(3) = 8e-023
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / -3
Query: 371 NPVTDIFRLTALLPKFTTFIFM*VFP 294
NPVT FR T PKFT I M* P
Sbjct: 1786 NPVTATFRFTDCSPKFTALICM*SLP 1709
Score = 31.2 bits (62), Expect(3) = 9e-030
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3 / +2
Query: 285 PT*WEHLHENKGCKFWK 335
P W+ LH ++GCK W+
Sbjct: 1700 PNQWQRLHTDQGCKLWR 1750
>gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 3PRIM, mRNA sequence
Length = 1096
Score = 97.2 bits (207), Expect(3) = 1e-029
Identities = 42/80 (52%), Positives = 54/80 (67%)
Frame = +1 / -3
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS YG P+YW+ F +SS ATL ST+
Sbjct: 665 KNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRSFAESSGATLLTSTL 486
Query: 235 QLPNYDQLVTSAITWNNPHD 294
+ + + ++ NN D
Sbjct: 485 KGNSTSLVASAISWKNNGKD 426
Score = 81.8 bits (173), Expect(2) = 3e-021
Identities = 44/71 (61%), Positives = 48/71 (67%)
Frame = -3 / +1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+S K Q* G P ELKTIASGFH S FT+SGA LAIST SLF S PMRN
Sbjct: 505 VAPLDSAKDR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 684
Query: 35 AASAKAAISVP 3
AASA+ A +P
Sbjct: 685 AASAREARRLP 717
Score = 49.4 bits (102), Expect(3) = 1e-029
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / -1
Query: 394 GSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
GS KTVLTS + DENSF QP+KVVP S + A + M V+L
Sbjct: 331 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVL 206
Score = 43.0 bits (88), Expect(2) = 3e-021
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3 / +3
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*IS 378
L+ GTT SGC KEFSS + +V TVF DP I+
Sbjct: 246 LSCGTTFSGCEKEFSSITLVEVSTVFFDPETLIT 347
Score = 23.0 bits (44), Expect(3) = 1e-029
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +3 / -2
Query: 294 WEHLHENKGCK 326
W+ H +KGCK
Sbjct: 435 WQRSHTHKGCK 403
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
complete sequence
Length = 80379
Score = 65.4 bits (137), Expect(5) = 2e-026
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +1 / +3
Query: 118 RWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTIQLPNYDQLVTSAITWNNPHD 294
RWNPDAIVFNS YG P+YW+ FF +SS ATL ST++ + + ++ NN D
Sbjct: 54723 RWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSTSLVASAISWKNNGKD 54899
Score = 38.5 bits (78), Expect(5) = 2e-026
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1 / +3
Query: 394 GSIKTVLTSGWLRDENSFQQPDKV 465
GS KTVLTS + DENSF QP+KV
Sbjct: 55068 GSKKTVLTSTNVMDENSFSQPEKV 55139
Score = 38.0 bits (77), Expect(5) = 2e-026
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1 / +1
Query: 61 SDVVEMASCAPLLVNDNDQRW 123
SD+VEMAS APL VN ND+R+
Sbjct: 54586 SDIVEMASYAPLFVNTNDRRY 54648
Score = 27.5 bits (54), Expect(5) = 2e-026
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1 / +3
Query: 313 IKVVNFGSKAVSLNISVTGLETDIQTFGSIK 405
++ VNFG+ + ++ + VTGL+ ++ K
Sbjct: 54984 LQAVNFGANSENMQVLVTGLDPNVMRVSGSK 55076
Score = 22.5 bits (43), Expect(5) = 2e-026
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3 / +3
Query: 30 SCISHWIRKE 59
SC+SHW KE
Sbjct: 54474 SCVSHWS*KE 54503
>gb|H37473.1|H37473 15602 Lambda-PRL2 Arabidopsis thaliana cDNA clone 182B24T7, mRNA
sequence
Length = 481
Score = 87.7 bits (186), Expect(3) = 3e-022
Identities = 34/51 (66%), Positives = 40/51 (78%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSS 207
+NSD+VEMAS APL VN N +RWNPDAIVFNS YG P+YW+ FF +SS
Sbjct: 52 KNSDIVEMASYAPLFVNTNXRRWNPDAIVFNSSHLYGTPSYWVQRFFAESS 204
Score = 35.3 bits (71), Expect(3) = 3e-022
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1 / +3
Query: 289 HDGNTYMKIKVVNFGSKAVSLNISVTGL 372
++G Y++IK VNFG+ + ++ + VTGL
Sbjct: 276 NNGKDYIRIKAVNFGAXSXNMQVLVTGL 359
Score = 21.6 bits (41), Expect(3) = 3e-022
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1 / +3
Query: 244 NYDQLVTSAITWNN 285
N LV SAI+W N
Sbjct: 237 NSTSLVASAISWKN 278
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.316 0.130 0.405
Matrix: BLOSUM62
Number of Hits to DB: 1,234,018,965
Number of Sequences: 1013581
Number of extensions: 18037712
Number of successful extensions: 291837
Number of sequences better than 1.0e-020: 15
length of database: 302,980,290
effective HSP length: 54
effective length of database: 248,246,916
effective search space used: 29789629920
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)