TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336981.2.1
(510 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_101647.3| Arabidopsis thaliana ATPase, coupled to tr... 182 5e-052
gb|AY080792.1| Arabidopsis thaliana putative ABC transporte... 182 5e-052
gb|AY150457.1| Arabidopsis thaliana putative ABC transporte... 182 5e-052
gb|AV559526.1|AV559526 AV559526 Arabidopsis thaliana green ... 182 8e-048
ref|NM_104028.2| Arabidopsis thaliana CER5 (ECERIFERUM 5); ... 150 3e-044
gb|AF412079.1|AF412079 Arabidopsis thaliana At1g51500/F5D21... 150 3e-044
gb|AY093162.1| Arabidopsis thaliana ATP-dependent transmemb... 150 3e-044
gb|BT008427.1| Arabidopsis thaliana At1g51560 gene, complet... 150 3e-044
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 110 1e-043
gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis ... 110 1e-043
ref|NM_113003.3| Arabidopsis thaliana ATPase, coupled to tr... 150 4e-043
gb|AY093054.1| Arabidopsis thaliana unknown protein (At3g21... 150 4e-043
gb|BT000405.1| Arabidopsis thaliana unknown protein (At3g21... 150 4e-043
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 131 1e-038
gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BA... 131 2e-038
gb|AY734542.1| Arabidopsis thaliana ABC transporter CER5 ge... 131 2e-038
dbj|AK118438.1| Arabidopsis thaliana At1g51460 mRNA for put... 90 2e-035
ref|NM_104024.2| Arabidopsis thaliana ATPase, coupled to tr... 90 2e-035
emb|CQ805180.1| Sequence 1591 from Patent WO2004035798 90 2e-035
dbj|AP000604.1| Arabidopsis thaliana genomic DNA, chromosom... 91 5e-034
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 131 1e-029
gb|BE525097.1|BE525097 M58E11STM Arabidopsis developing see... 108 1e-022
gb|Z18062.1|Z18062 ATTS0548 Versailles-VB Arabidopsis thali... 106 5e-022
>ref|NM_101647.3| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
substances AT1G17840 mRNA, complete cds
Length = 2999
Score = 182 bits (391), Expect(2) = 5e-052
Identities = 70/143 (48%), Positives = 101/143 (70%)
Frame = +1 / +3
Query: 82 STYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISA 261
++YS+I +R + +TFMSIGGFPSFVED+KVF++ERL+GHYGV+ FVI+NT+SA
Sbjct: 1533 TSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSA 1712
Query: 262 TPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGI 441
TP+L ++ + G + Y++ GL G H+++F IA++VP+FLMGI
Sbjct: 1713 TPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGI 1892
Query: 442 IVGAGVQGVMMLNGGFFRLPNEL 510
I+GAG+QG+ ML GFFRLPN++
Sbjct: 1893 IIGAGIQGIFMLVSGFFRLPNDI 1961
Score = 44.6 bits (91), Expect(2) = 5e-052
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1 / +3
Query: 4 GYYWMRLAIYMGIGVCLGTIFYQLGYS 84
GYYW+RL IY+ + VC+GTI+ +G S
Sbjct: 1458 GYYWLRLLIYILVTVCIGTIYLNVGTS 1538
>gb|AY080792.1| Arabidopsis thaliana putative ABC transporter protein (At1g17840)
mRNA, complete cds
Length = 2652
Score = 182 bits (391), Expect(2) = 5e-052
Identities = 70/143 (48%), Positives = 101/143 (70%)
Frame = +1 / +2
Query: 82 STYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISA 261
++YS+I +R + +TFMSIGGFPSFVED+KVF++ERL+GHYGV+ FVI+NT+SA
Sbjct: 1520 TSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSA 1699
Query: 262 TPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGI 441
TP+L ++ + G + Y++ GL G H+++F IA++VP+FLMGI
Sbjct: 1700 TPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGI 1879
Query: 442 IVGAGVQGVMMLNGGFFRLPNEL 510
I+GAG+QG+ ML GFFRLPN++
Sbjct: 1880 IIGAGIQGIFMLVSGFFRLPNDI 1948
Score = 44.6 bits (91), Expect(2) = 5e-052
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 4 GYYWMRLAIYMGIGVCLGTIFYQLGYS 84
GYYW+RL IY+ + VC+GTI+ +G S
Sbjct: 1445 GYYWLRLLIYILVTVCIGTIYLNVGTS 1525
>gb|AY150457.1| Arabidopsis thaliana putative ABC transporter protein (At1g17840)
mRNA, complete cds
Length = 2143
Score = 182 bits (391), Expect(2) = 5e-052
Identities = 70/143 (48%), Positives = 101/143 (70%)
Frame = +1 / +1
Query: 82 STYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISA 261
++YS+I +R + +TFMSIGGFPSFVED+KVF++ERL+GHYGV+ FVI+NT+SA
Sbjct: 1273 TSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSA 1452
Query: 262 TPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGI 441
TP+L ++ + G + Y++ GL G H+++F IA++VP+FLMGI
Sbjct: 1453 TPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGI 1632
Query: 442 IVGAGVQGVMMLNGGFFRLPNEL 510
I+GAG+QG+ ML GFFRLPN++
Sbjct: 1633 IIGAGIQGIFMLVSGFFRLPNDI 1701
Score = 44.6 bits (91), Expect(2) = 5e-052
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1 / +1
Query: 4 GYYWMRLAIYMGIGVCLGTIFYQLGYS 84
GYYW+RL IY+ + VC+GTI+ +G S
Sbjct: 1198 GYYWLRLLIYILVTVCIGTIYLNVGTS 1278
>gb|AV559526.1|AV559526 AV559526 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ119a05F 3', mRNA sequence
Length = 626
Score = 182 bits (391), Expect(2) = 8e-048
Identities = 70/143 (48%), Positives = 101/143 (70%)
Frame = +1 / +1
Query: 82 STYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISA 261
++YS+I +R + +TFMSIGGFPSFVED+KVF++ERL+GHYGV+ FVI+NT+SA
Sbjct: 64 TSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSA 243
Query: 262 TPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGI 441
TP+L ++ + G + Y++ GL G H+++F IA++VP+FLMGI
Sbjct: 244 TPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGI 423
Query: 442 IVGAGVQGVMMLNGGFFRLPNEL 510
I+GAG+QG+ ML GFFRLPN++
Sbjct: 424 IIGAGIQGIFMLVSGFFRLPNDI 492
Score = 30.4 bits (60), Expect(2) = 8e-048
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1 / +1
Query: 16 MRLAIYMGIGVCLGTIFYQLGYS 84
+RL IY+ + VC+GTI+ +G S
Sbjct: 1 LRLLIYILVTVCIGTIYLNVGTS 69
>ref|NM_104028.2| Arabidopsis thaliana CER5 (ECERIFERUM 5); ATPase, coupled to
transmembrane movement of substances AT1G51500 (CER5)
mRNA, complete cds
Length = 2329
Score = 150 bits (323), Expect(2) = 3e-044
Identities = 60/142 (42%), Positives = 92/142 (64%)
Frame = +1 / +3
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS ++ISN +S+
Sbjct: 1308 SYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSF 1487
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L ++L+ G++ Y + G H+ +F +A++VP+FLMG+I
Sbjct: 1488 PFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLI 1667
Query: 445 VGAGVQGVMMLNGGFFRLPNEL 510
GAG+ G++M+ GFFRL +L
Sbjct: 1668 TGAGIIGIIMMTSGFFRLLPDL 1733
Score = 49.6 bits (102), Expect(2) = 3e-044
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYW R+ IY+ + C+GTIFY +G+S
Sbjct: 1227 IGYYWSRIVIYIVVSFCVGTIFYDVGHS 1310
>gb|AF412079.1|AF412079 Arabidopsis thaliana At1g51500/F5D21_6 mRNA, complete cds
Length = 2308
Score = 150 bits (323), Expect(2) = 3e-044
Identities = 60/142 (42%), Positives = 92/142 (64%)
Frame = +1 / +3
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS ++ISN +S+
Sbjct: 1308 SYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSF 1487
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L ++L+ G++ Y + G H+ +F +A++VP+FLMG+I
Sbjct: 1488 PFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLI 1667
Query: 445 VGAGVQGVMMLNGGFFRLPNEL 510
GAG+ G++M+ GFFRL +L
Sbjct: 1668 TGAGIIGIIMMTSGFFRLLPDL 1733
Score = 49.6 bits (102), Expect(2) = 3e-044
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYW R+ IY+ + C+GTIFY +G+S
Sbjct: 1227 IGYYWSRIVIYIVVSFCVGTIFYDVGHS 1310
>gb|AY093162.1| Arabidopsis thaliana ATP-dependent transmembrane transporter,
putative (At1g51500) mRNA, complete cds
Length = 2263
Score = 150 bits (323), Expect(2) = 3e-044
Identities = 60/142 (42%), Positives = 92/142 (64%)
Frame = +1 / +2
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS ++ISN +S+
Sbjct: 1298 SYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSF 1477
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L ++L+ G++ Y + G H+ +F +A++VP+FLMG+I
Sbjct: 1478 PFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLI 1657
Query: 445 VGAGVQGVMMLNGGFFRLPNEL 510
GAG+ G++M+ GFFRL +L
Sbjct: 1658 TGAGIIGIIMMTSGFFRLLPDL 1723
Score = 49.6 bits (102), Expect(2) = 3e-044
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYW R+ IY+ + C+GTIFY +G+S
Sbjct: 1217 IGYYWSRIVIYIVVSFCVGTIFYDVGHS 1300
>gb|BT008427.1| Arabidopsis thaliana At1g51560 gene, complete cds
Length = 2064
Score = 150 bits (323), Expect(2) = 3e-044
Identities = 60/142 (42%), Positives = 92/142 (64%)
Frame = +1 / +1
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS ++ISN +S+
Sbjct: 1213 SYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSF 1392
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L ++L+ G++ Y + G H+ +F +A++VP+FLMG+I
Sbjct: 1393 PFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLI 1572
Query: 445 VGAGVQGVMMLNGGFFRLPNEL 510
GAG+ G++M+ GFFRL +L
Sbjct: 1573 TGAGIIGIIMMTSGFFRLLPDL 1638
Score = 49.6 bits (102), Expect(2) = 3e-044
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYW R+ IY+ + C+GTIFY +G+S
Sbjct: 1132 IGYYWSRIVIYIVVSFCVGTIFYDVGHS 1215
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 110 bits (234), Expect(4) = 1e-043
Identities = 41/93 (44%), Positives = 64/93 (68%)
Frame = +1 / +1
Query: 184 VKVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXX 363
++VF++ERL+GHYGV+ FVI+NT+SATP+L ++ + G + Y++ GL G H+++F
Sbjct: 6144787 LQVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLC 6144966
Query: 364 XXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGVQ 462
IA++VP+FLMGII+GAG+Q
Sbjct: 6144967 LYASVTVVESLMMAIASIVPNFLMGIIIGAGIQ 6145065
Score = 47.3 bits (97), Expect(4) = 1e-043
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1 / +1
Query: 97 IQSRCEVIMYTIALLTFMSIGGFPSFVEDVKV 192
IQ+R + +TFMSIGGFPSFVED+KV
Sbjct: 6144619 IQARGSCASFVFGFVTFMSIGGFPSFVEDMKV 6144714
Score = 44.6 bits (91), Expect(4) = 1e-043
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 4 GYYWMRLAIYMGIGVCLGTIFYQLGYS 84
GYYW+RL IY+ + VC+GTI+ +G S
Sbjct: 6144449 GYYWLRLLIYILVTVCIGTIYLNVGTS 6144529
Score = 32.2 bits (64), Expect(4) = 1e-043
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 460 QGVMMLNGGFFRLPNEL 510
QG+ ML GFFRLPN++
Sbjct: 6145151 QGIFMLVSGFFRLPNDI 6145201
>gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 75133
Score = 110 bits (234), Expect(4) = 1e-043
Identities = 41/93 (44%), Positives = 64/93 (68%)
Frame = +1 / +1
Query: 184 VKVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXX 363
++VF++ERL+GHYGV+ FVI+NT+SATP+L ++ + G + Y++ GL G H+++F
Sbjct: 25981 LQVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLC 26160
Query: 364 XXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGVQ 462
IA++VP+FLMGII+GAG+Q
Sbjct: 26161 LYASVTVVESLMMAIASIVPNFLMGIIIGAGIQ 26259
Score = 47.3 bits (97), Expect(4) = 1e-043
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1 / +1
Query: 97 IQSRCEVIMYTIALLTFMSIGGFPSFVEDVKV 192
IQ+R + +TFMSIGGFPSFVED+KV
Sbjct: 25813 IQARGSCASFVFGFVTFMSIGGFPSFVEDMKV 25908
Score = 44.6 bits (91), Expect(4) = 1e-043
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 4 GYYWMRLAIYMGIGVCLGTIFYQLGYS 84
GYYW+RL IY+ + VC+GTI+ +G S
Sbjct: 25643 GYYWLRLLIYILVTVCIGTIYLNVGTS 25723
Score = 32.2 bits (64), Expect(4) = 1e-043
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 460 QGVMMLNGGFFRLPNEL 510
QG+ ML GFFRLPN++
Sbjct: 26345 QGIFMLVSGFFRLPNDI 26395
>ref|NM_113003.3| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
substances AT3G21090 mRNA, complete cds
Length = 2241
Score = 150 bits (322), Expect(2) = 4e-043
Identities = 62/142 (43%), Positives = 91/142 (64%)
Frame = +1 / +2
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS +++SN IS+
Sbjct: 1316 SYTSILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSF 1495
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L +S++ G + Y L G H+ +F +A+VVP+FLMG+I
Sbjct: 1496 PFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLI 1675
Query: 445 VGAGVQGVMMLNGGFFRLPNEL 510
GAG+ G++M+ GFFRL +L
Sbjct: 1676 TGAGLIGIIMMTSGFFRLLPDL 1741
Score = 46.4 bits (95), Expect(2) = 4e-043
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
VGYYW R+ Y+ + + +GTIFY +GYS
Sbjct: 1235 VGYYWTRIISYIVVSISVGTIFYDVGYS 1318
>gb|AY093054.1| Arabidopsis thaliana unknown protein (At3g21090) mRNA, complete cds
Length = 2240
Score = 150 bits (322), Expect(2) = 4e-043
Identities = 62/142 (43%), Positives = 91/142 (64%)
Frame = +1 / +2
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS +++SN IS+
Sbjct: 1316 SYTSILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSF 1495
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L +S++ G + Y L G H+ +F +A+VVP+FLMG+I
Sbjct: 1496 PFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLI 1675
Query: 445 VGAGVQGVMMLNGGFFRLPNEL 510
GAG+ G++M+ GFFRL +L
Sbjct: 1676 TGAGLIGIIMMTSGFFRLLPDL 1741
Score = 46.4 bits (95), Expect(2) = 4e-043
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
VGYYW R+ Y+ + + +GTIFY +GYS
Sbjct: 1235 VGYYWTRIISYIVVSISVGTIFYDVGYS 1318
>gb|BT000405.1| Arabidopsis thaliana unknown protein (At3g21090) mRNA, complete cds
Length = 2114
Score = 150 bits (322), Expect(2) = 4e-043
Identities = 62/142 (43%), Positives = 91/142 (64%)
Frame = +1 / +1
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS +++SN IS+
Sbjct: 1210 SYTSILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSF 1389
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L +S++ G + Y L G H+ +F +A+VVP+FLMG+I
Sbjct: 1390 PFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLI 1569
Query: 445 VGAGVQGVMMLNGGFFRLPNEL 510
GAG+ G++M+ GFFRL +L
Sbjct: 1570 TGAGLIGIIMMTSGFFRLLPDL 1635
Score = 46.4 bits (95), Expect(2) = 4e-043
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1 / +1
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
VGYYW R+ Y+ + + +GTIFY +GYS
Sbjct: 1129 VGYYWTRIISYIVVSISVGTIFYDVGYS 1212
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 131 bits (281), Expect(2) = 1e-038
Identities = 52/125 (41%), Positives = 80/125 (64%)
Frame = +1 / -3
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS ++ISN +S+
Sbjct: 3458445 SYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSF 3458266
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L ++L+ G++ Y + G H+ +F +A++VP+FLMG+I
Sbjct: 3458265 PFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLI 3458086
Query: 445 VGAGV 459
GAG+
Sbjct: 3458085 TGAGI 3458071
Score = 57.4 bits (119), Expect(4) = 1e-026
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +1 / -2
Query: 187 KVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVY 351
+VF +ERL+GHYGV+ + +SN +S+ P++ + L ++ Y+ G HF Y
Sbjct: 3437311 QVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFY 3437147
Score = 49.6 bits (102), Expect(2) = 1e-038
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1 / -3
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYW R+ IY+ + C+GTIFY +G+S
Sbjct: 3458526 IGYYWSRIVIYIVVSFCVGTIFYDVGHS 3458443
Score = 47.8 bits (98), Expect(4) = 1e-026
Identities = 13/26 (50%), Positives = 23/26 (88%)
Frame = +1 / -1
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLG 78
+GYYWMR+A+Y+ + +C+G+IF+ +G
Sbjct: 3437576 LGYYWMRIAVYIVLSICVGSIFFNVG 3437499
Score = 37.3 bits (75), Expect(4) = 1e-026
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1 / -1
Query: 88 YSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKV 192
++++ S + +TFMSIGGF SF+E++KV
Sbjct: 3437492 HTNVMSTAACGGFMAGFMTFMSIGGFQSFIEEMKV 3437388
Score = 33.6 bits (67), Expect(4) = 1e-026
Identities = 12/17 (70%), Positives = 17/17 (100%)
Frame = +1 / -2
Query: 406 IAAVVPDFLMGIIVGAG 456
IA+VVP+FLMG+++GAG
Sbjct: 3437092 IASVVPNFLMGVMLGAG 3437042
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
sequence
Length = 92652
Score = 131 bits (281), Expect(2) = 2e-038
Identities = 52/125 (41%), Positives = 80/125 (64%)
Frame = +1 / +3
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS ++ISN +S+
Sbjct: 41565 SYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSF 41744
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L ++L+ G++ Y + G H+ +F +A++VP+FLMG+I
Sbjct: 41745 PFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLI 41924
Query: 445 VGAGV 459
GAG+
Sbjct: 41925 TGAGI 41939
Score = 57.4 bits (119), Expect(5) = 2e-028
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +1 / +2
Query: 187 KVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVY 351
+VF +ERL+GHYGV+ + +SN +S+ P++ + L ++ Y+ G HF Y
Sbjct: 62699 QVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFY 62863
Score = 49.6 bits (102), Expect(2) = 2e-038
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYW R+ IY+ + C+GTIFY +G+S
Sbjct: 41484 IGYYWSRIVIYIVVSFCVGTIFYDVGHS 41567
Score = 47.8 bits (98), Expect(5) = 2e-028
Identities = 13/26 (50%), Positives = 23/26 (88%)
Frame = +1 / +1
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLG 78
+GYYWMR+A+Y+ + +C+G+IF+ +G
Sbjct: 62434 LGYYWMRIAVYIVLSICVGSIFFNVG 62511
Score = 37.3 bits (75), Expect(5) = 2e-028
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1 / +1
Query: 88 YSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKV 192
++++ S + +TFMSIGGF SF+E++KV
Sbjct: 62518 HTNVMSTAACGGFMAGFMTFMSIGGFQSFIEEMKV 62622
Score = 33.6 bits (67), Expect(5) = 2e-028
Identities = 12/17 (70%), Positives = 17/17 (100%)
Frame = +1 / +2
Query: 406 IAAVVPDFLMGIIVGAG 456
IA+VVP+FLMG+++GAG
Sbjct: 62918 IASVVPNFLMGVMLGAG 62968
Score = 22.6 bits (43), Expect(5) = 2e-028
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 463 GVMMLNGGFFR 495
G+M+L+ GFFR
Sbjct: 63070 GIMVLSAGFFR 63102
>gb|AY734542.1| Arabidopsis thaliana ABC transporter CER5 gene, complete cds
Length = 3396
Score = 131 bits (281), Expect(2) = 2e-038
Identities = 52/125 (41%), Positives = 80/125 (64%)
Frame = +1 / +3
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS ++ISN +S+
Sbjct: 1845 SYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSF 2024
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L ++L+ G++ Y + G H+ +F +A++VP+FLMG+I
Sbjct: 2025 PFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLI 2204
Query: 445 VGAGV 459
GAG+
Sbjct: 2205 TGAGI 2219
Score = 49.6 bits (102), Expect(2) = 2e-038
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYW R+ IY+ + C+GTIFY +G+S
Sbjct: 1764 IGYYWSRIVIYIVVSFCVGTIFYDVGHS 1847
>dbj|AK118438.1| Arabidopsis thaliana At1g51460 mRNA for putative ATP-dependent
transmembrane transporter, complete cds, clone:
RAFL19-68-K01
Length = 2285
Score = 89.5 bits (189), Expect(3) = 2e-035
Identities = 33/88 (37%), Positives = 55/88 (62%)
Frame = +1 / +3
Query: 88 YSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATP 267
++++ S + +TFMSIGGF SF+E++KVF +ERL+GHYGV+ + +SN +S+ P
Sbjct: 1296 HTNVMSTAACGGFMAGFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLP 1475
Query: 268 YLAGVSLLPGAMLYYLTGLSKGADHFVY 351
++ + L ++ Y+ G HF Y
Sbjct: 1476 FIILMCLSTSSITIYMVRFQSGGSHFFY 1559
Score = 51.5 bits (106), Expect(3) = 2e-035
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = +1 / +3
Query: 406 IAAVVPDFLMGIIVGAGVQGVMMLNGGFFR 495
IA+VVP+FLMG+++GAG G+M+L+ GFFR
Sbjct: 1614 IASVVPNFLMGVMLGAGYIGIMVLSAGFFR 1703
Score = 47.8 bits (98), Expect(3) = 2e-035
Identities = 13/26 (50%), Positives = 23/26 (88%)
Frame = +1 / +3
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLG 78
+GYYWMR+A+Y+ + +C+G+IF+ +G
Sbjct: 1212 LGYYWMRIAVYIVLSICVGSIFFNVG 1289
>ref|NM_104024.2| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
substances AT1G51460 mRNA, complete cds
Length = 2285
Score = 89.5 bits (189), Expect(3) = 2e-035
Identities = 33/88 (37%), Positives = 55/88 (62%)
Frame = +1 / +3
Query: 88 YSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATP 267
++++ S + +TFMSIGGF SF+E++KVF +ERL+GHYGV+ + +SN +S+ P
Sbjct: 1296 HTNVMSTAACGGFMAGFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLP 1475
Query: 268 YLAGVSLLPGAMLYYLTGLSKGADHFVY 351
++ + L ++ Y+ G HF Y
Sbjct: 1476 FIILMCLSTSSITIYMVRFQSGGSHFFY 1559
Score = 51.5 bits (106), Expect(3) = 2e-035
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = +1 / +3
Query: 406 IAAVVPDFLMGIIVGAGVQGVMMLNGGFFR 495
IA+VVP+FLMG+++GAG G+M+L+ GFFR
Sbjct: 1614 IASVVPNFLMGVMLGAGYIGIMVLSAGFFR 1703
Score = 47.8 bits (98), Expect(3) = 2e-035
Identities = 13/26 (50%), Positives = 23/26 (88%)
Frame = +1 / +3
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLG 78
+GYYWMR+A+Y+ + +C+G+IF+ +G
Sbjct: 1212 LGYYWMRIAVYIVLSICVGSIFFNVG 1289
>emb|CQ805180.1| Sequence 1591 from Patent WO2004035798
Length = 2037
Score = 89.5 bits (189), Expect(3) = 2e-035
Identities = 33/88 (37%), Positives = 55/88 (62%)
Frame = +1 / +1
Query: 88 YSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATP 267
++++ S + +TFMSIGGF SF+E++KVF +ERL+GHYGV+ + +SN +S+ P
Sbjct: 1198 HTNVMSTAACGGFMAGFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLP 1377
Query: 268 YLAGVSLLPGAMLYYLTGLSKGADHFVY 351
++ + L ++ Y+ G HF Y
Sbjct: 1378 FIILMCLSTSSITIYMVRFQSGGSHFFY 1461
Score = 51.5 bits (106), Expect(3) = 2e-035
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = +1 / +1
Query: 406 IAAVVPDFLMGIIVGAGVQGVMMLNGGFFR 495
IA+VVP+FLMG+++GAG G+M+L+ GFFR
Sbjct: 1516 IASVVPNFLMGVMLGAGYIGIMVLSAGFFR 1605
Score = 47.8 bits (98), Expect(3) = 2e-035
Identities = 13/26 (50%), Positives = 23/26 (88%)
Frame = +1 / +1
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLG 78
+GYYWMR+A+Y+ + +C+G+IF+ +G
Sbjct: 1114 LGYYWMRIAVYIVLSICVGSIFFNVG 1191
>dbj|AP000604.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6
Length = 63748
Score = 91.3 bits (193), Expect(3) = 5e-034
Identities = 37/91 (40%), Positives = 55/91 (60%)
Frame = +1 / -2
Query: 187 KVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXX 366
+VF KERLSG+YGVS +++SN IS+ P+L +S++ G + Y L G H+ +F
Sbjct: 37980 QVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNI 37801
Query: 367 XXXXXXXXXXXXXIAAVVPDFLMGIIVGAGV 459
+A+VVP+FLMG+I GAG+
Sbjct: 37800 FFSVSVIESLMMVVASVVPNFLMGLITGAGL 37708
Score = 46.4 bits (95), Expect(3) = 5e-034
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1 / -3
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERL 210
+Y+SI +R + +TFMSIGGFPSF+E++KV K L
Sbjct: 38162 SYTSILARVSCGGFITGFMTFMSIGGFPSFLEEMKVNNKTLL 38037
Score = 46.4 bits (95), Expect(3) = 5e-034
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1 / -3
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
VGYYW R+ Y+ + + +GTIFY +GYS
Sbjct: 38243 VGYYWTRIISYIVVSISVGTIFYDVGYS 38160
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 131 bits (281), Expect = 1e-029
Identities = 52/125 (41%), Positives = 80/125 (64%)
Frame = +1 / -1
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISAT 264
+Y+SI +R + +TFMSIGGFPSF+E++KVF KERLSG+YGVS ++ISN +S+
Sbjct: 19102850 SYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSF 19102671
Query: 265 PYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGII 444
P+L ++L+ G++ Y + G H+ +F +A++VP+FLMG+I
Sbjct: 19102670 PFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLI 19102491
Query: 445 VGAGV 459
GAG+
Sbjct: 19102490 TGAGI 19102476
Score = 110 bits (234), Expect = 4e-023
Identities = 41/93 (44%), Positives = 64/93 (68%)
Frame = +1 / +3
Query: 184 VKVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXX 363
++VF++ERL+GHYGV+ FVI+NT+SATP+L ++ + G + Y++ GL G H+++F
Sbjct: 6144963 LQVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLC 6145142
Query: 364 XXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGVQ 462
IA++VP+FLMGII+GAG+Q
Sbjct: 6145143 LYASVTVVESLMMAIASIVPNFLMGIIIGAGIQ 6145241
>gb|BE525097.1|BE525097 M58E11STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M58E11 5', mRNA sequence
Length = 410
Score = 108 bits (230), Expect = 1e-022
Identities = 44/106 (41%), Positives = 65/106 (61%)
Frame = +1 / +3
Query: 193 FRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXX 372
F KERLSG+YGVS +++SN IS+ P+L +S++ G + Y L G H+ +F
Sbjct: 9 FYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFF 188
Query: 373 XXXXXXXXXXXIAAVVPDFLMGIIVGAGVQGVMMLNGGFFRLPNEL 510
+A+VVP+FLMG+I GAG+ G++M+ GFFRL +L
Sbjct: 189 SVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDL 326
>gb|Z18062.1|Z18062 ATTS0548 Versailles-VB Arabidopsis thaliana cDNA clone VBV04-20592,
mRNA sequence
Length = 253
Score = 106 bits (226), Expect = 5e-022
Identities = 40/76 (52%), Positives = 57/76 (75%)
Frame = +1 / +2
Query: 94 SIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATPYL 273
+I +R + +TFMSIGGFPSFVED+KVF++ERL+GHYGV+ FVI+NT+SATP+L
Sbjct: 2 AILARGSCASFXFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAXFVIANTLSATPFL 181
Query: 274 AGVSLLPGAMLYYLTG 321
++ + G Y++ G
Sbjct: 182 IXITFISGTXXYFMXG 229
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 743,196,625
Number of Sequences: 1013581
Number of extensions: 7613746
Number of successful extensions: 160830
Number of sequences better than 1.0e-020: 28
length of database: 302,980,290
effective HSP length: 54
effective length of database: 248,246,916
effective search space used: 28548395340
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)