TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204398.2.1
(666 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY014797.1| Arabidopsis thaliana calcium-binding protein... 148 2e-034
ref|NM_105479.1| Arabidopsis thaliana ANN5 (annexin 5); cal... 148 2e-034
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 113 7e-031
gb|AC012563.7|AC012563 Arabidopsis thaliana chromosome 1 BA... 113 7e-031
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 113 5e-024
>gb|AY014797.1| Arabidopsis thaliana calcium-binding protein annexin 5 (ANN5) mRNA,
complete cds
Length = 951
Score = 148 bits (318), Expect = 2e-034
Identities = 61/90 (67%), Positives = 72/90 (80%)
Frame = +1 / +1
Query: 1 TSGNFEFALLAILRCAENPAKYFAKLLRKAMKGLGTDDKTLIRVVVTRTEIDMQYIKAEY 180
T GNFE LL IL+CAEN YFAK LRK+MKGLGTDD LIR+VVTR E+DMQ+I EY
Sbjct: 673 TRGNFEHVLLTILQCAENSCFYFAKALRKSMKGLGTDDTALIRIVVTRAEVDMQFIITEY 852
Query: 181 FKKYKKPLAEAIHSETSGNYRTFLLSLVGP 270
K+YKK L A+HS+T+ +YRTFLLSL+GP
Sbjct: 853 RKRYKKTLYNAVHSDTTSHYRTFLLSLLGP 942
>ref|NM_105479.1| Arabidopsis thaliana ANN5 (annexin 5); calcium ion binding /
calcium-dependent phospholipid binding AT1G68090 (ANN5)
mRNA, complete cds
Length = 951
Score = 148 bits (318), Expect = 2e-034
Identities = 61/90 (67%), Positives = 72/90 (80%)
Frame = +1 / +1
Query: 1 TSGNFEFALLAILRCAENPAKYFAKLLRKAMKGLGTDDKTLIRVVVTRTEIDMQYIKAEY 180
T GNFE LL IL+CAEN YFAK LRK+MKGLGTDD LIR+VVTR E+DMQ+I EY
Sbjct: 673 TRGNFEHVLLTILQCAENSCFYFAKALRKSMKGLGTDDTALIRIVVTRAEVDMQFIITEY 852
Query: 181 FKKYKKPLAEAIHSETSGNYRTFLLSLVGP 270
K+YKK L A+HS+T+ +YRTFLLSL+GP
Sbjct: 853 RKRYKKTLYNAVHSDTTSHYRTFLLSLLGP 942
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 113 bits (242), Expect(2) = 7e-031
Identities = 48/76 (63%), Positives = 60/76 (78%)
Frame = +1 / -1
Query: 61 KYFAKLLRKAMKGLGTDDKTLIRVVVTRTEIDMQYIKAEYFKKYKKPLAEAIHSETSGNY 240
K A+ LRK+MKGLGTDD LIR+VVTR E+DMQ+I EY K+YKK L A+HS+T+ +Y
Sbjct: 9760976 KLKAQALRKSMKGLGTDDTALIRIVVTRAEVDMQFIITEYRKRYKKTLYNAVHSDTTSHY 9760797
Query: 241 RTFLLSLVGPGH*VMF 288
RTFLLSL+GP * +F
Sbjct: 9760796 RTFLLSLLGPNV*DLF 9760749
Score = 42.3 bits (86), Expect(2) = 7e-031
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +1 / -1
Query: 1 TSGNFEFALLAILRCAENPAKYFAKL 78
T GNFE LL IL+CAEN YFAK+
Sbjct: 9761108 TRGNFEHVLLTILQCAENSCFYFAKV 9761031
>gb|AC012563.7|AC012563 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete
sequence
Length = 101966
Score = 113 bits (242), Expect(2) = 7e-031
Identities = 48/76 (63%), Positives = 60/76 (78%)
Frame = +1 / +1
Query: 61 KYFAKLLRKAMKGLGTDDKTLIRVVVTRTEIDMQYIKAEYFKKYKKPLAEAIHSETSGNY 240
K A+ LRK+MKGLGTDD LIR+VVTR E+DMQ+I EY K+YKK L A+HS+T+ +Y
Sbjct: 24730 KLKAQALRKSMKGLGTDDTALIRIVVTRAEVDMQFIITEYRKRYKKTLYNAVHSDTTSHY 24909
Query: 241 RTFLLSLVGPGH*VMF 288
RTFLLSL+GP * +F
Sbjct: 24910 RTFLLSLLGPNV*DLF 24957
Score = 42.3 bits (86), Expect(2) = 7e-031
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +1 / +1
Query: 1 TSGNFEFALLAILRCAENPAKYFAKL 78
T GNFE LL IL+CAEN YFAK+
Sbjct: 24598 TRGNFEHVLLTILQCAENSCFYFAKV 24675
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 113 bits (242), Expect = 5e-024
Identities = 48/76 (63%), Positives = 60/76 (78%)
Frame = +1 / -2
Query: 61 KYFAKLLRKAMKGLGTDDKTLIRVVVTRTEIDMQYIKAEYFKKYKKPLAEAIHSETSGNY 240
K A+ LRK+MKGLGTDD LIR+VVTR E+DMQ+I EY K+YKK L A+HS+T+ +Y
Sbjct: 25523323 KLKAQALRKSMKGLGTDDTALIRIVVTRAEVDMQFIITEYRKRYKKTLYNAVHSDTTSHY 25523144
Query: 241 RTFLLSLVGPGH*VMF 288
RTFLLSL+GP * +F
Sbjct: 25523143 RTFLLSLLGPNV*DLF 25523096
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,378,080,301
Number of Sequences: 1013581
Number of extensions: 18994649
Number of successful extensions: 142214
Number of sequences better than 1.0e-020: 7
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 41040733610
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)