TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2655972.2.1
(666 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome II... 167 5e-047
ref|NM_111095.3| Arabidopsis thaliana FMN binding / electro... 167 6e-047
emb|BX824439.1|CNS0A4Q4 Arabidopsis thaliana Full-length cD... 167 6e-047
gb|CW796290.1|CW796290 WiscDsLox433G7 Arabidopsis thaliana ... 167 6e-047
gb|BT010739.1| Arabidopsis thaliana At3g02280 gene, complet... 167 2e-046
gb|AV557040.1|AV557040 AV557040 Arabidopsis thaliana green ... 165 4e-046
dbj|AP000740.1| Arabidopsis thaliana genomic DNA, chromosom... 171 1e-041
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 171 1e-041
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 171 1e-041
gb|BP641760.1|BP641760 BP641760 RAFL19 Arabidopsis thaliana... 114 3e-024
gb|AV534272.1|AV534272 AV534272 Arabidopsis thaliana flower... 87 6e-023
gb|AU229196.1|AU229196 AU229196 RAFL16 Arabidopsis thaliana... 87 6e-023
>gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence,
complete sequence
Length = 94369
Score = 167 bits (360), Expect(2) = 5e-047
Identities = 61/101 (60%), Positives = 83/101 (82%)
Frame = +2 / -1
Query: 32 SPVLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKE 211
+PV+FFFGCRN++ DFLY+DFW +HA++ G+LS +GGGF+ AFSRDQP+KVYVQ KI+E
Sbjct: 17605 APVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPKKVYVQHKIRE 17426
Query: 212 QSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGG 334
S R+W+LL A +Y+AGSSTKMP DV +A E+++ +E G
Sbjct: 17425 MSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETG 17303
Score = 110 bits (235), Expect = 4e-023
Identities = 57/100 (57%), Positives = 63/100 (63%)
Frame = -1 / +3
Query: 333 PPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFHSLELCSFILGCT*TFCG*SREKAT 154
P S SS A +TS GIFV+EPA * A +K +L L S IL CT*TF G S E A
Sbjct: 17304 PVSSDTISSKADITSQGIFVDEPAT*TAAPSQSKSQTLLLISRILCCT*TFFGWSLENAV 17483
Query: 153 KKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPKKNRTG 34
KPPP ++ P S A* SQKS YRKS S FLQPKKN TG
Sbjct: 17484 *KPPPFPSESMPPSLA*DSQKSRYRKSVSLFLQPKKNMTG 17603
Score = 42.3 bits (86), Expect(2) = 5e-047
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2 / -1
Query: 329 GGVKQADASKWLRDLERAGRLNIETWS*L 415
GG + AS+WL+ LE+ GR N+E WS*L
Sbjct: 17305 GGGSKEVASRWLKALEKTGRYNVEAWS*L 17219
>ref|NM_111095.3| Arabidopsis thaliana FMN binding / electron transporter/
oxidoreductase AT3G02280 mRNA, complete cds
Length = 2199
Score = 167 bits (360), Expect(2) = 6e-047
Identities = 61/101 (60%), Positives = 83/101 (82%)
Frame = +2 / +2
Query: 32 SPVLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKE 211
+PV+FFFGCRN++ DFLY+DFW +HA++ G+LS +GGGF+ AFSRDQP+KVYVQ KI+E
Sbjct: 1634 APVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPKKVYVQHKIRE 1813
Query: 212 QSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGG 334
S R+W+LL A +Y+AGSSTKMP DV +A E+++ +E G
Sbjct: 1814 MSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETG 1936
Score = 110 bits (235), Expect = 4e-023
Identities = 57/100 (57%), Positives = 63/100 (63%)
Frame = -1 / -1
Query: 333 PPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFHSLELCSFILGCT*TFCG*SREKAT 154
P S SS A +TS GIFV+EPA * A +K +L L S IL CT*TF G S E A
Sbjct: 1935 PVSSDTISSKADITSQGIFVDEPAT*TAAPSQSKSQTLLLISRILCCT*TFFGWSLENAV 1756
Query: 153 KKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPKKNRTG 34
KPPP ++ P S A* SQKS YRKS S FLQPKKN TG
Sbjct: 1755 *KPPPFPSESMPPSLA*DSQKSRYRKSVSLFLQPKKNMTG 1636
Score = 42.3 bits (86), Expect(2) = 6e-047
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2 / +2
Query: 329 GGVKQADASKWLRDLERAGRLNIETWS*L 415
GG + AS+WL+ LE+ GR N+E WS*L
Sbjct: 1934 GGGSKEVASRWLKALEKTGRYNVEAWS*L 2020
>emb|BX824439.1|CNS0A4Q4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH49ZB07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2140
Score = 167 bits (360), Expect(2) = 6e-047
Identities = 61/101 (60%), Positives = 83/101 (82%)
Frame = +2 / +1
Query: 32 SPVLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKE 211
+PV+FFFGCRN++ DFLY+DFW +HA++ G+LS +GGGF+ AFSRDQP+KVYVQ KI+E
Sbjct: 1633 APVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPKKVYVQHKIRE 1812
Query: 212 QSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGG 334
S R+W+LL A +Y+AGSSTKMP DV +A E+++ +E G
Sbjct: 1813 MSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETG 1935
Score = 110 bits (235), Expect = 4e-023
Identities = 57/100 (57%), Positives = 63/100 (63%)
Frame = -1 / -3
Query: 333 PPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFHSLELCSFILGCT*TFCG*SREKAT 154
P S SS A +TS GIFV+EPA * A +K +L L S IL CT*TF G S E A
Sbjct: 1934 PVSSDTISSKADITSQGIFVDEPAT*TAAPSQSKSQTLLLISRILCCT*TFFGWSLENAV 1755
Query: 153 KKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPKKNRTG 34
KPPP ++ P S A* SQKS YRKS S FLQPKKN TG
Sbjct: 1754 *KPPPFPSESMPPSLA*DSQKSRYRKSVSLFLQPKKNMTG 1635
Score = 42.3 bits (86), Expect(2) = 6e-047
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2 / +1
Query: 329 GGVKQADASKWLRDLERAGRLNIETWS*L 415
GG + AS+WL+ LE+ GR N+E WS*L
Sbjct: 1933 GGGSKEVASRWLKALEKTGRYNVEAWS*L 2019
>gb|CW796290.1|CW796290 WiscDsLox433G7 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 759
Score = 167 bits (360), Expect(2) = 6e-047
Identities = 61/101 (60%), Positives = 83/101 (82%)
Frame = +2 / -2
Query: 32 SPVLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKE 211
+PV+FFFGCRN++ DFLY+DFW +HA++ G+LS +GGGF+ AFSRDQP+KVYVQ KI+E
Sbjct: 416 APVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPKKVYVQHKIRE 237
Query: 212 QSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGG 334
S R+W+LL A +Y+AGSSTKMP DV +A E+++ +E G
Sbjct: 236 MSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETG 114
Score = 110 bits (235), Expect = 4e-023
Identities = 57/100 (57%), Positives = 63/100 (63%)
Frame = -1 / +1
Query: 333 PPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFHSLELCSFILGCT*TFCG*SREKAT 154
P S SS A +TS GIFV+EPA * A +K +L L S IL CT*TF G S E A
Sbjct: 115 PVSSDTISSKADITSQGIFVDEPAT*TAAPSQSKSQTLLLISRILCCT*TFFGWSLENAV 294
Query: 153 KKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPKKNRTG 34
KPPP ++ P S A* SQKS YRKS S FLQPKKN TG
Sbjct: 295 *KPPPFPSESMPPSLA*DSQKSRYRKSVSLFLQPKKNMTG 414
Score = 42.3 bits (86), Expect(2) = 6e-047
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2 / -2
Query: 329 GGVKQADASKWLRDLERAGRLNIETWS*L 415
GG + AS+WL+ LE+ GR N+E WS*L
Sbjct: 116 GGGSKEVASRWLKALEKTGRYNVEAWS*L 30
>gb|BT010739.1| Arabidopsis thaliana At3g02280 gene, complete cds
Length = 1872
Score = 167 bits (360), Expect(2) = 2e-046
Identities = 61/101 (60%), Positives = 83/101 (82%)
Frame = +2 / +1
Query: 32 SPVLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKE 211
+PV+FFFGCRN++ DFLY+DFW +HA++ G+LS +GGGF+ AFSRDQP+KVYVQ KI+E
Sbjct: 1489 APVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPKKVYVQHKIRE 1668
Query: 212 QSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGG 334
S R+W+LL A +Y+AGSSTKMP DV +A E+++ +E G
Sbjct: 1669 MSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETG 1791
Score = 110 bits (235), Expect = 4e-023
Identities = 57/100 (57%), Positives = 63/100 (63%)
Frame = -1 / -2
Query: 333 PPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFHSLELCSFILGCT*TFCG*SREKAT 154
P S SS A +TS GIFV+EPA * A +K +L L S IL CT*TF G S E A
Sbjct: 1790 PVSSDTISSKADITSQGIFVDEPAT*TAAPSQSKSQTLLLISRILCCT*TFFGWSLENAV 1611
Query: 153 KKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPKKNRTG 34
KPPP ++ P S A* SQKS YRKS S FLQPKKN TG
Sbjct: 1610 *KPPPFPSESMPPSLA*DSQKSRYRKSVSLFLQPKKNMTG 1491
Score = 40.5 bits (82), Expect(2) = 2e-046
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2 / +1
Query: 329 GGVKQADASKWLRDLERAGRLNIETWS* 412
GG + AS+WL+ LE+ GR N+E WS*
Sbjct: 1789 GGGSKEVASRWLKALEKTGRYNVEAWS* 1872
>gb|AV557040.1|AV557040 AV557040 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ059a11F 3', mRNA sequence
Length = 569
Score = 165 bits (354), Expect(2) = 4e-046
Identities = 60/101 (59%), Positives = 82/101 (81%)
Frame = +2 / -1
Query: 32 SPVLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKE 211
+PV+FFFGCR ++ DFLY+DFW +HA++ G+LS +GGGF+ AFSRDQP+KVYVQ KI+E
Sbjct: 566 APVMFFFGCRTKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPKKVYVQHKIRE 387
Query: 212 QSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGG 334
S R+W+LL A +Y+AGSSTKMP DV +A E+++ +E G
Sbjct: 386 MSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETG 264
Score = 107 bits (228), Expect = 4e-022
Identities = 56/100 (56%), Positives = 62/100 (62%)
Frame = -1 / +1
Query: 333 PPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFHSLELCSFILGCT*TFCG*SREKAT 154
P S SS A +TS GIFV+EPA * A +K +L L S IL CT*TF G S E A
Sbjct: 265 PVSSDTISSKADITSQGIFVDEPAT*TAAPSQSKSQTLLLISRILCCT*TFFGWSLENAV 444
Query: 153 KKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPKKNRTG 34
KPPP ++ P S A* SQKS YRKS S LQPKKN TG
Sbjct: 445 *KPPPFPSESMPPSLA*DSQKSRYRKSVSLVLQPKKNMTG 564
Score = 42.3 bits (86), Expect(2) = 4e-046
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2 / -1
Query: 329 GGVKQADASKWLRDLERAGRLNIETWS*L 415
GG + AS+WL+ LE+ GR N+E WS*L
Sbjct: 266 GGGSKEVASRWLKALEKTGRYNVEAWS*L 180
>dbj|AP000740.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MSD24
Length = 40018
Score = 171 bits (369), Expect = 1e-041
Identities = 67/124 (54%), Positives = 95/124 (76%)
Frame = +2 / -1
Query: 41 LFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKEQSS 220
+ FFGCRN++ F Y+DFW +HA+ G+LS +GGGF+ AFSRDQP+KVYVQ K++E S
Sbjct: 36208 IVFFGCRNKDTYFQYRDFWESHARGGGLLSE*KGGGFYTAFSRDQPKKVYVQHKLREMSK 36029
Query: 221 RLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQADASKWLRDLERAGRLNIE 400
++W+LL AV+Y+AGSST+MP+DV +AL E++ +E G + AS+ L+ LE+A R N+E
Sbjct: 36028 KVWDLLCDGAVVYVAGSSTEMPSDVMSALGEIVSEETGGSKEVASRRLKALEKAQRYNVE 35849
Query: 401 TWS* 412
WS*
Sbjct: 35848 AWS* 35837
Score = 105 bits (225), Expect(2) = 2e-023
Identities = 59/121 (48%), Positives = 70/121 (57%)
Frame = -1 / +3
Query: 408 DHVSMLSLPALSRSLSHFEASACLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKF 229
D S L L A S++LS EA++ P S S A +TS GI V+EPA * TA NK
Sbjct: 35841 DQASTLYLCAFSKALSRREATSFDPPVSSDTISPKADITSDGISVDEPAT*TTAPSHNKS 36020
Query: 228 HSLELCSFILGCT*TFCG*SREKATKKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPK 49
+ L S L CT*TF G S E A KPPP + +++P A* SQKS Y K S FLQPK
Sbjct: 36021 QTFLLISRSLCCT*TFFGWSLENAV*KPPPFYSESSPPPLA*DSQKSRY*KYVSLFLQPK 36200
Query: 48 K 46
K
Sbjct: 36201 K 36203
Score = 32.7 bits (65), Expect(2) = 2e-023
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2 / +3
Query: 560 FRSSSNYFSVLDALTSTRFHISNAFDLQGNSHWF 459
+ +S+ + +LD ++ F IS A L+GN++WF
Sbjct: 34494 YEFNSDSWRILDHVSPGYFAISKAMTLKGNAYWF 34595
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 171 bits (369), Expect = 1e-041
Identities = 67/124 (54%), Positives = 95/124 (76%)
Frame = +2 / -1
Query: 41 LFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKEQSS 220
+ FFGCRN++ F Y+DFW +HA+ G+LS +GGGF+ AFSRDQP+KVYVQ K++E S
Sbjct: 8965953 IVFFGCRNKDTYFQYRDFWESHARGGGLLSE*KGGGFYTAFSRDQPKKVYVQHKLREMSK 8965774
Query: 221 RLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQADASKWLRDLERAGRLNIE 400
++W+LL AV+Y+AGSST+MP+DV +AL E++ +E G + AS+ L+ LE+A R N+E
Sbjct: 8965773 KVWDLLCDGAVVYVAGSSTEMPSDVMSALGEIVSEETGGSKEVASRRLKALEKAQRYNVE 8965594
Query: 401 TWS* 412
WS*
Sbjct: 8965593 AWS* 8965582
Score = 105 bits (225), Expect = 1e-021
Identities = 59/121 (48%), Positives = 70/121 (57%)
Frame = -1 / +2
Query: 408 DHVSMLSLPALSRSLSHFEASACLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKF 229
D S L L A S++LS EA++ P S S A +TS GI V+EPA * TA NK
Sbjct: 8965586 DQASTLYLCAFSKALSRREATSFDPPVSSDTISPKADITSDGISVDEPAT*TTAPSHNKS 8965765
Query: 228 HSLELCSFILGCT*TFCG*SREKATKKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPK 49
+ L S L CT*TF G S E A KPPP + +++P A* SQKS Y K S FLQPK
Sbjct: 8965766 QTFLLISRSLCCT*TFFGWSLENAV*KPPPFYSESSPPPLA*DSQKSRY*KYVSLFLQPK 8965945
Query: 48 K 46
K
Sbjct: 8965946 K 8965948
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 171 bits (369), Expect = 1e-041
Identities = 67/124 (54%), Positives = 95/124 (76%)
Frame = +2 / -1
Query: 41 LFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKEQSS 220
+ FFGCRN++ F Y+DFW +HA+ G+LS +GGGF+ AFSRDQP+KVYVQ K++E S
Sbjct: 9024545 IVFFGCRNKDTYFQYRDFWESHARGGGLLSE*KGGGFYTAFSRDQPKKVYVQHKLREMSK 9024366
Query: 221 RLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQADASKWLRDLERAGRLNIE 400
++W+LL AV+Y+AGSST+MP+DV +AL E++ +E G + AS+ L+ LE+A R N+E
Sbjct: 9024365 KVWDLLCDGAVVYVAGSSTEMPSDVMSALGEIVSEETGGSKEVASRRLKALEKAQRYNVE 9024186
Query: 401 TWS* 412
WS*
Sbjct: 9024185 AWS* 9024174
Score = 167 bits (360), Expect = 2e-040
Identities = 61/101 (60%), Positives = 83/101 (82%)
Frame = +2 / +2
Query: 32 SPVLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKE 211
+PV+FFFGCRN++ DFLY+DFW +HA++ G+LS +GGGF+ AFSRDQP+KVYVQ KI+E
Sbjct: 457283 APVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPKKVYVQHKIRE 457462
Query: 212 QSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGG 334
S R+W+LL A +Y+AGSSTKMP DV +A E+++ +E G
Sbjct: 457463 MSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETG 457585
Score = 110 bits (235), Expect = 4e-023
Identities = 57/100 (57%), Positives = 63/100 (63%)
Frame = -1 / -3
Query: 333 PPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFHSLELCSFILGCT*TFCG*SREKAT 154
P S SS A +TS GIFV+EPA * A +K +L L S IL CT*TF G S E A
Sbjct: 457584 PVSSDTISSKADITSQGIFVDEPAT*TAAPSQSKSQTLLLISRILCCT*TFFGWSLENAV 457405
Query: 153 KKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPKKNRTG 34
KPPP ++ P S A* SQKS YRKS S FLQPKKN TG
Sbjct: 457404 *KPPPFPSESMPPSLA*DSQKSRYRKSVSLFLQPKKNMTG 457285
Score = 105 bits (225), Expect = 1e-021
Identities = 59/121 (48%), Positives = 70/121 (57%)
Frame = -1 / +1
Query: 408 DHVSMLSLPALSRSLSHFEASACLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKF 229
D S L L A S++LS EA++ P S S A +TS GI V+EPA * TA NK
Sbjct: 9024178 DQASTLYLCAFSKALSRREATSFDPPVSSDTISPKADITSDGISVDEPAT*TTAPSHNKS 9024357
Query: 228 HSLELCSFILGCT*TFCG*SREKATKKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPK 49
+ L S L CT*TF G S E A KPPP + +++P A* SQKS Y K S FLQPK
Sbjct: 9024358 QTFLLISRSLCCT*TFFGWSLENAV*KPPPFYSESSPPPLA*DSQKSRY*KYVSLFLQPK 9024537
Query: 48 K 46
K
Sbjct: 9024538 K 9024540
>gb|BP641760.1|BP641760 BP641760 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-56-G05 3',
mRNA sequence
Length = 452
Score = 114 bits (243), Expect = 3e-024
Identities = 45/83 (54%), Positives = 62/83 (74%)
Frame = +2 / -1
Query: 80 LYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKEQSSRLWNLLLSDAVIY 259
L +DFW +HA++ G+LS +GGGF+ AFSRDQP+KVYV KI+E S R +LL +Y
Sbjct: 452 LSRDFWDSHAREGGILSEGKGGGFYTAFSRDQPKKVYVPHKIREMSKRGLDLLCHGPPVY 273
Query: 260 IAGSSTKMPADVTAALEEVICKE 328
+AGSSTKMP DV +A E+++ +E
Sbjct: 272 VAGSSTKMPCDVMSAFEDIVSEE 204
>gb|AV534272.1|AV534272 AV534272 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB077c10F 3', mRNA sequence
Length = 431
Score = 87.2 bits (184), Expect(2) = 6e-023
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2 / -1
Query: 167 RDQPQKVYVQPKIKEQSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGG 334
RDQP+KVYVQ KI+E S R+W+LL A +Y+AGSSTKMP DV +A E+++ +E G
Sbjct: 431 RDQPKKVYVQHKIREMSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETG 264
Score = 42.3 bits (86), Expect(2) = 6e-023
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2 / -1
Query: 329 GGVKQADASKWLRDLERAGRLNIETWS*L 415
GG + AS+WL+ LE+ GR N+E WS*L
Sbjct: 266 GGGSKEVASRWLKALEKTGRYNVEAWS*L 180
>gb|AU229196.1|AU229196 AU229196 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-80-C24 3',
mRNA sequence
Length = 408
Score = 87.2 bits (184), Expect(2) = 6e-023
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2 / -1
Query: 167 RDQPQKVYVQPKIKEQSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGG 334
RDQP+KVYVQ KI+E S R+W+LL A +Y+AGSSTKMP DV +A E+++ +E G
Sbjct: 408 RDQPKKVYVQHKIREMSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETG 241
Score = 42.3 bits (86), Expect(2) = 6e-023
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2 / -1
Query: 329 GGVKQADASKWLRDLERAGRLNIETWS*L 415
GG + AS+WL+ LE+ GR N+E WS*L
Sbjct: 243 GGGSKEVASRWLKALEKTGRYNVEAWS*L 157
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,460,127,315
Number of Sequences: 1013581
Number of extensions: 21516512
Number of successful extensions: 170668
Number of sequences better than 1.0e-020: 15
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 41040733610
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)