TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2649891.2.1
(621 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R2... 99 3e-035
ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ... 99 3e-035
emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cD... 99 3e-035
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 84 6e-031
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 59 2e-027
gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis ... 59 2e-027
gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis tha... 59 2e-027
gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6)... 50 1e-025
gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II s... 56 2e-024
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
beta-expansin (At2g45110) mRNA, complete cds
Length = 977
Score = 98.7 bits (209), Expect(3) = 3e-035
Identities = 37/65 (56%), Positives = 52/65 (80%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GA+AKPGQADQLRSAG +R+ Y R C + G +I F++DAG+N Y++ +VEYE+GDG+L
Sbjct: 462 GALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDL 641
Query: 440 RSVEL 426
+VE+
Sbjct: 642 SNVEI 656
Score = 48.7 bits (100), Expect(3) = 3e-035
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
MQ+ VW+ NSG+ L+GPF++RLTSG V+ +
Sbjct: 684 MQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 791
Score = 41.4 bits (84), Expect(3) = 3e-035
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2 / +3
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
S + +VA +VIPA W P +YRS+VNF
Sbjct: 771 SHKVIVAYNVIPANWKPDESYRSIVNF 851
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
AT2G45110 (ATEXPB4) mRNA, complete cds
Length = 956
Score = 98.7 bits (209), Expect(3) = 3e-035
Identities = 37/65 (56%), Positives = 52/65 (80%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GA+AKPGQADQLRSAG +R+ Y R C + G +I F++DAG+N Y++ +VEYE+GDG+L
Sbjct: 462 GALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDL 641
Query: 440 RSVEL 426
+VE+
Sbjct: 642 SNVEI 656
Score = 48.7 bits (100), Expect(3) = 3e-035
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
MQ+ VW+ NSG+ L+GPF++RLTSG V+ +
Sbjct: 684 MQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 791
Score = 41.4 bits (84), Expect(3) = 3e-035
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2 / +3
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
S + +VA +VIPA W P +YRS+VNF
Sbjct: 771 SHKVIVAYNVIPANWKPDESYRSIVNF 851
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 98.7 bits (209), Expect(3) = 3e-035
Identities = 37/65 (56%), Positives = 52/65 (80%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GA+AKPGQADQLRSAG +R+ Y R C + G +I F++DAG+N Y++ +VEYE+GDG+L
Sbjct: 431 GALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDL 610
Query: 440 RSVEL 426
+VE+
Sbjct: 611 SNVEI 625
Score = 48.7 bits (100), Expect(3) = 3e-035
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
MQ+ VW+ NSG+ L+GPF++RLTSG V+ +
Sbjct: 653 MQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 760
Score = 41.4 bits (84), Expect(3) = 3e-035
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2 / +2
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
S + +VA +VIPA W P +YRS+VNF
Sbjct: 740 SHKVIVAYNVIPANWKPDESYRSIVNF 820
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 84.5 bits (178), Expect(3) = 6e-031
Identities = 36/67 (53%), Positives = 46/67 (68%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA GQ QLR+ G L+I Y +V C++ G + F+VD GSNAN AVLV Y +GDGE+
Sbjct: 424 GAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEI 603
Query: 440 RSVELMQ 420
+EL Q
Sbjct: 604 GRIELKQ 624
Score = 51.0 bits (105), Expect(3) = 6e-031
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2 / +1
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
SG+TVVAS+VIPA W PGA Y+S VNF
Sbjct: 739 SGKTVVASNVIPANWQPGAIYKSNVNF 819
Score = 38.6 bits (78), Expect(3) = 6e-031
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
M QSWG VW+ + + L+ P S+R+TS
Sbjct: 652 MSQSWGAVWKLDVSSPLRAPLSLRVTS 732
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 59.3 bits (123), Expect(4) = 2e-027
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = -2 / +2
Query: 551 RVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
RV C++ G + F+VD GSNAN AVLV Y +GDGE+ +EL Q
Sbjct: 8669384 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 8669515
Score = 51.0 bits (105), Expect(4) = 2e-027
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2 / +2
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
SG+TVVAS+VIPA W PGA Y+S VNF
Sbjct: 8669630 SGKTVVASNVIPANWQPGAIYKSNVNF 8669710
Score = 38.6 bits (78), Expect(4) = 2e-027
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
M QSWG VW+ + + L+ P S+R+TS
Sbjct: 8669543 MSQSWGAVWKLDVSSPLRAPLSLRVTS 8669623
Score = 30.4 bits (60), Expect(4) = 2e-027
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXR 549
GAMA GQ QLR+ G L+I Y +
Sbjct: 8669198 GAMAISGQDSQLRNVGELQILYKK 8669269
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 109560
Score = 59.3 bits (123), Expect(4) = 2e-027
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = -2 / +1
Query: 551 RVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
RV C++ G + F+VD GSNAN AVLV Y +GDGE+ +EL Q
Sbjct: 107140 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 107271
Score = 51.0 bits (105), Expect(4) = 2e-027
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2 / +1
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
SG+TVVAS+VIPA W PGA Y+S VNF
Sbjct: 107386 SGKTVVASNVIPANWQPGAIYKSNVNF 107466
Score = 38.6 bits (78), Expect(4) = 2e-027
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
M QSWG VW+ + + L+ P S+R+TS
Sbjct: 107299 MSQSWGAVWKLDVSSPLRAPLSLRVTS 107379
Score = 30.4 bits (60), Expect(4) = 2e-027
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXR 549
GAMA GQ QLR+ G L+I Y +
Sbjct: 106954 GAMAISGQDSQLRNVGELQILYKK 107025
>gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis thaliana BAC F1E22, complete sequence
Length = 92356
Score = 59.3 bits (123), Expect(4) = 2e-027
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = -2 / +3
Query: 551 RVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
RV C++ G + F+VD GSNAN AVLV Y +GDGE+ +EL Q
Sbjct: 25587 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 25718
Score = 51.0 bits (105), Expect(4) = 2e-027
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2 / +3
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
SG+TVVAS+VIPA W PGA Y+S VNF
Sbjct: 25833 SGKTVVASNVIPANWQPGAIYKSNVNF 25913
Score = 38.6 bits (78), Expect(4) = 2e-027
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
M QSWG VW+ + + L+ P S+R+TS
Sbjct: 25746 MSQSWGAVWKLDVSSPLRAPLSLRVTS 25826
Score = 30.4 bits (60), Expect(4) = 2e-027
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXR 549
GAMA GQ QLR+ G L+I Y +
Sbjct: 25401 GAMAISGQDSQLRNVGELQILYKK 25472
>gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6) gene, complete cds
Length = 2504
Score = 49.6 bits (102), Expect(4) = 1e-025
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = -2 / +1
Query: 548 VPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVEL 426
V C + +IAF++D G+N Y++ +VEYE+GDG+L E+
Sbjct: 2179 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYTEI 2301
Score = 45.5 bits (93), Expect(4) = 1e-025
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
MQ+ VW+ NSG+ L GPF++RLTS VV +
Sbjct: 2329 MQEMRSAVWKVNSGSPLTGPFNIRLTSAESHNVVVA 2436
Score = 43.7 bits (89), Expect(4) = 1e-025
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = -2 / +1
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
S VVA +VIPA W P TYRSVVNF
Sbjct: 2416 SHNVVVAYNVIPANWKPNETYRSVVNF 2496
Score = 41.8 bits (85), Expect(4) = 1e-025
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXR 549
GA+A+PGQ D+LRSAG LR+ Y R
Sbjct: 1898 GALARPGQGDRLRSAGVLRVYYIR 1969
>gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II section 241 of 255 of the complete
sequence. Sequence from clones T13E15, T14P1
Length = 87885
Score = 55.6 bits (115), Expect(4) = 2e-024
Identities = 19/39 (48%), Positives = 31/39 (79%)
Frame = -2 / +2
Query: 542 CSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVEL 426
C + G +I F++DAG+N Y++ +VEYE+GDG+L +VE+
Sbjct: 66551 CLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEI 66667
Score = 48.7 bits (100), Expect(4) = 2e-024
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
MQ+ VW+ NSG+ L+GPF++RLTSG V+ +
Sbjct: 66695 MQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 66802
Score = 46.4 bits (95), Expect(4) = 2e-024
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXR 549
GA+AKPGQADQLRSAG +R+ Y R
Sbjct: 66111 GALAKPGQADQLRSAGVIRVNYKR 66182
Score = 41.4 bits (84), Expect(4) = 2e-024
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2 / +2
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
S + +VA +VIPA W P +YRS+VNF
Sbjct: 66782 SHKVIVAYNVIPANWKPDESYRSIVNF 66862
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 900,943,508
Number of Sequences: 1013581
Number of extensions: 9755210
Number of successful extensions: 127534
Number of sequences better than 1.0e-020: 10
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 37332233585
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)