BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5735869.2.1
(539 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA709186.1|CA709186 wdk2c.pk012.e3 wdk2c Triticum aestiv... 123 1e-026
>gb|CA709186.1|CA709186 wdk2c.pk012.e3 wdk2c Triticum aestivum cDNA clone wdk2c.pk012.e3 5'
end, mRNA sequence
Length = 502
Score = 123 bits (62), Expect = 1e-026
Identities = 144/172 (83%), Gaps = 5/172 (2%)
Strand = Plus / Minus
Query: 313 gtcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaat 372
|||||| ||||| ||| |||||||||||||||||||| |||| || ||| ||||||| |
Sbjct: 333 gtcatcatcactcctctggctcctgcaacatgttgcatcgagacacgatggtgcggaatt 274
Query: 373 cctcgaggtttatc-----atcaccgtcactatcaaagcaacggaccatcttagatatct 427
|||||||| ||||| ||| |||||||||||||||| ||| ||||||||||| ||
Sbjct: 273 cctcgaggcttatctttccatctttgtcactatcaaagcaatggatcatcttagatagct 214
Query: 428 cagaatctgtccagatgaaatcatttattgtagccattctttcnngatccca 479
|| ||||||||||||||||||||||||| | |||||| |||| |||||||
Sbjct: 213 caaaatctgtccagatgaaatcatttatattggccattttttcaagatccca 162
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,432
Number of Sequences: 636343
Number of extensions: 91432
Number of successful extensions: 20748
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20745
Number of HSP's gapped (non-prelim): 3
length of query: 539
length of database: 367,240,239
effective HSP length: 19
effective length of query: 520
effective length of database: 355,149,722
effective search space: 184677855440
effective search space used: 184677855440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)