BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696537.2.1
(592 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ283415.1|BJ283415 BJ283415 Y. Ogihara unpublished cDNA... 157 1e-036
gb|DR741243.1|DR741243 FGAS001174 Triticum aestivum FGAS: L... 157 1e-036
gb|CV777156.1|CV777156 FGAS071560 Triticum aestivum FGAS: L... 127 9e-028
gb|BE405714.1|BE405714 WHE1214_E01_I02ZS Wheat etiolated se... 125 4e-027
gb|BG905456.1|BG905456 TaLr1139H04R TaLr1 Triticum aestivum... 125 4e-027
gb|CA595378.1|CA595378 wpa1c.pk009.k16 wpa1c Triticum aesti... 125 4e-027
gb|CA640126.1|CA640126 wre1n.pk0031.c6 wre1n Triticum aesti... 125 4e-027
gb|AJ610280.1|AJ610280 AJ610280 Triticum turgidum subsp. du... 125 4e-027
gb|CD889794.1|CD889794 G118.113B12F010716 G118 Triticum aes... 119 2e-025
gb|CD889795.1|CD889795 G118.113B12R010926 G118 Triticum aes... 119 2e-025
gb|BQ801451.1|BQ801451 WHE2814_E09_I18ZS Triticum monococcu... 92 5e-017
gb|CK210135.1|CK210135 FGAS021928 Triticum aestivum FGAS: L... 84 1e-014
gb|CD865220.1|CD865220 AZO2.073I10F000912 AZO2 Triticum aes... 82 5e-014
gb|CD865221.1|CD865221 AZO2.073I10R000922 AZO2 Triticum aes... 82 5e-014
gb|BQ800993.1|BQ800993 WHE2809_B03_C05ZS Triticum monococcu... 76 3e-012
gb|BQ801605.1|BQ801605 WHE2816_D05_H10ZS Triticum monococcu... 76 3e-012
gb|BQ801888.1|BQ801888 WHE2819_F11_L20ZS Triticum monococcu... 76 3e-012
gb|BQ802594.1|BQ802594 WHE2827_G01_N01ZS Triticum monococcu... 76 3e-012
gb|BQ802729.1|BQ802729 WHE2829_D02_G03ZS Triticum monococcu... 76 3e-012
gb|BQ803114.1|BQ803114 WHE2833_H07_O13ZS Triticum monococcu... 76 3e-012
gb|BQ803663.1|BQ803663 WHE2840_C05_F10ZS Triticum monococcu... 76 3e-012
gb|CD938342.1|CD938342 OV.109M06F010309 OV Triticum aestivu... 76 3e-012
gb|BE427378.1|BE427378 PSR6368-B ITEC PSR Wheat Pericarp/Te... 70 2e-010
gb|BJ246264.1|BJ246264 BJ246264 Y. Ogihara unpublished cDNA... 68 7e-010
gb|BJ278362.1|BJ278362 BJ278362 Y. Ogihara unpublished cDNA... 68 7e-010
gb|BG905457.1|BG905457 TaLr1139H04F TaLr1 Triticum aestivum... 64 1e-008
gb|BG907517.1|BG907517 TaLr1160F07R TaLr1 Triticum aestivum... 60 2e-007
gb|BM137287.1|BM137287 WHE2631_H12_P23ZS Wheat Fusarium gra... 60 2e-007
gb|CA485010.1|CA485010 WHE4313_C12_E23ZS Wheat meiotic anth... 54 1e-005
gb|BE415572.1|BE415572 MWL035.E10000413 ITEC MWL Wheat Root... 48 7e-004
gb|CA647683.1|CA647683 wre1n.pk0121.e3 wre1n Triticum aesti... 48 7e-004
gb|CV769037.1|CV769037 FGAS063428 Triticum aestivum FGAS: L... 40 0.17
>gb|BJ283415.1|BJ283415 BJ283415 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr15n23 3', mRNA sequence
Length = 724
Score = 157 bits (79), Expect = 1e-036
Identities = 277/343 (80%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 306 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 365
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 366 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 425
Query: 369 gatagatcgctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcgg 428
| |||| | |||||||||| | || || |||| ||| || ||||| ||||| ||||
Sbjct: 426 ggtagaactctggcatcggcgtggcggcgacctcctggtcgagcttctgccatgcatcgg 485
Query: 429 acatgttgcaggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatct 488
||||| |||||| |||| ||| |||||||| || || || || || | |||||||
Sbjct: 486 tcatgtcgcaggccgaccgtgagcagaccgggcacgagaagtggtgatgaaccctcatct 545
Query: 489 cgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcg 548
||| |||||||||| ||||| ||||| |||||||| || |||||||| | | |||
Sbjct: 546 cgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatagtcg 605
Query: 549 agtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 606 agtcaaataggtactcgaagcagacagggcagttgtgatgcat 648
>gb|DR741243.1|DR741243 FGAS001174 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1077
Score = 157 bits (79), Expect = 1e-036
Identities = 277/343 (80%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 669 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 610
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 609 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 550
Query: 369 gatagatcgctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcgg 428
| |||| | |||||||||| | || || |||| ||| || ||||| ||||| ||||
Sbjct: 549 ggtagaactctggcatcggcgtggcggcgacctcctggtcgagcttctgccatgcatcgg 490
Query: 429 acatgttgcaggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatct 488
||||| |||||| |||| ||| |||||||| || || || || || | |||||||
Sbjct: 489 tcatgtcgcaggccgaccgtgagcagaccgggcacgagaagtggtgatgaaccctcatct 430
Query: 489 cgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcg 548
||| |||||||||| ||||| ||||| |||||||| || |||||||| | | |||
Sbjct: 429 cgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatagtcg 370
Query: 549 agtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 369 agtcaaataggtactcgaagcagacagggcagttgtgatgcat 327
>gb|CV777156.1|CV777156 FGAS071560 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 833
Score = 127 bits (64), Expect = 9e-028
Identities = 120/139 (86%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 671 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttntgcgccaggacgt 612
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 611 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 552
Query: 369 gatagatcgctggcatcgg 387
| |||| | ||||||||||
Sbjct: 551 ggtagaactctggcatcgg 533
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 438 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 379
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 378 atggtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 329
>gb|BE405714.1|BE405714 WHE1214_E01_I02ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE1214_E01_I02, mRNA
sequence
Length = 619
Score = 125 bits (63), Expect = 4e-027
Identities = 120/139 (86%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 492 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 433
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 432 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 373
Query: 369 gatagatcgctggcatcgg 387
| |||| | ||||||||||
Sbjct: 372 ggtagaactctggcatcgg 354
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 259 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 200
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 199 atggtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 150
>gb|BG905456.1|BG905456 TaLr1139H04R TaLr1 Triticum aestivum cDNA clone TaLr1139H04 5',
mRNA sequence
Length = 684
Score = 125 bits (63), Expect = 4e-027
Identities = 120/139 (86%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 491 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 432
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 431 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 372
Query: 369 gatagatcgctggcatcgg 387
| |||| | ||||||||||
Sbjct: 371 ggtagaactctggcatcgg 353
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 258 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 199
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 198 atggtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 149
>gb|CA595378.1|CA595378 wpa1c.pk009.k16 wpa1c Triticum aestivum cDNA clone wpa1c.pk009.k16
5' end, mRNA sequence
Length = 627
Score = 125 bits (63), Expect = 4e-027
Identities = 120/139 (86%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 244 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 185
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 184 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 125
Query: 369 gatagatcgctggcatcgg 387
| |||| | ||||||||||
Sbjct: 124 ggtagaactctggcatcgg 106
>gb|CA640126.1|CA640126 wre1n.pk0031.c6 wre1n Triticum aestivum cDNA clone wre1n.pk0031.c6
5' end, mRNA sequence
Length = 578
Score = 125 bits (63), Expect = 4e-027
Identities = 120/139 (86%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 353 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 294
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 293 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 234
Query: 369 gatagatcgctggcatcgg 387
| |||| | ||||||||||
Sbjct: 233 ggtagaactctggcatcgg 215
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 120 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 61
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 60 atggtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 11
>gb|AJ610280.1|AJ610280 AJ610280 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 01808R, mRNA
sequence
Length = 603
Score = 125 bits (63), Expect = 4e-027
Identities = 120/139 (86%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 246 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 187
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 186 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 127
Query: 369 gatagatcgctggcatcgg 387
| |||| | ||||||||||
Sbjct: 126 ggtagaactctggcatcgg 108
>gb|CD889794.1|CD889794 G118.113B12F010716 G118 Triticum aestivum cDNA clone G118113B12,
mRNA sequence
Length = 624
Score = 119 bits (60), Expect = 2e-025
Identities = 117/136 (86%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || |
Sbjct: 460 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacat 401
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 400 ggaagcgcacgctcgacgtcgccccgcagtcgttgcaaaggatccataccatcttcttct 341
Query: 369 gatagatcgctggcat 384
| |||| | |||||||
Sbjct: 340 ggtagaactctggcat 325
Score = 83.8 bits (42), Expect = 1e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 227 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 168
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct: 167 atggtcgagtcaaatagatactcgaagcagacagggcagttgtgatgcat 118
>gb|CD889795.1|CD889795 G118.113B12R010926 G118 Triticum aestivum cDNA clone G118113B12,
mRNA sequence
Length = 707
Score = 119 bits (60), Expect = 2e-025
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || |
Sbjct: 450 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacat 509
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 510 ggaagcgcacgctcgacgtcgccccgcagtcgttgcaaaggatccataccatcttcttct 569
Query: 369 gatagatcgctggcat 384
| |||| | |||||||
Sbjct: 570 ggtagaactctggcat 585
>gb|BQ801451.1|BQ801451 WHE2814_E09_I18ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2814_E09_I18, mRNA
sequence
Length = 771
Score = 91.7 bits (46), Expect = 5e-017
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 641 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 582
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccatacc 358
|||| ||||| | |||||| | || ||||||||||| ||||||||||||
Sbjct: 581 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccatacc 532
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 184 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 125
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 124 atagtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 75
Score = 42.1 bits (21), Expect = 0.043
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 355 taccatcttcttctgatagatcgctggcatcgg 387
||||||||||||||| |||| | ||||||||||
Sbjct: 410 taccatcttcttctggtagaactctggcatcgg 378
>gb|CK210135.1|CK210135 FGAS021928 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1099
Score = 83.8 bits (42), Expect = 1e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 707 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 648
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct: 647 atggtcgagtcaaatagatactcgaagcagacagggcagttgtgatgcat 598
Score = 73.8 bits (37), Expect = 1e-011
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 266 gtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgcacgttggac 325
|||||||| |||||||| ||||| ||||| ||||||| || ||||| ||||| | |||
Sbjct: 923 gtgttgtaggagctgcacccaggacacttttgcgccaggacatggaagcgcacgctcgac 864
Query: 326 gtcacgccacagtcgttgcaaaggatccataccatcttcttctgataga 374
||| | || ||||||| ||||||||||||||||||||||||| ||||
Sbjct: 863 gtcgccccgcagtcgtgcaaaaggatccataccatcttcttctggtaga 815
>gb|CD865220.1|CD865220 AZO2.073I10F000912 AZO2 Triticum aestivum cDNA clone AZO2073I10,
mRNA sequence
Length = 556
Score = 81.8 bits (41), Expect = 5e-014
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 105 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 46
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatcc 353
|||| ||||| | |||||| | || ||||||||||| |||||||
Sbjct: 45 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatcc 1
>gb|CD865221.1|CD865221 AZO2.073I10R000922 AZO2 Triticum aestivum cDNA clone AZO2073I10,
mRNA sequence
Length = 540
Score = 81.8 bits (41), Expect = 5e-014
Identities = 89/105 (84%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 436 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 495
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatcc 353
|||| ||||| | |||||| | || ||||||||||| |||||||
Sbjct: 496 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatcc 540
>gb|BQ800993.1|BQ800993 WHE2809_B03_C05ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2809_B03_C05, mRNA
sequence
Length = 784
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 723 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 664
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 663 atagtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 614
>gb|BQ801605.1|BQ801605 WHE2816_D05_H10ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2816_D05_H10, mRNA
sequence
Length = 777
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 710 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 651
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 650 atagtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 601
>gb|BQ801888.1|BQ801888 WHE2819_F11_L20ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2819_F11_L20, mRNA
sequence
Length = 758
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 682 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 623
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 622 atagtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 573
>gb|BQ802594.1|BQ802594 WHE2827_G01_N01ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2827_G01_N01, mRNA
sequence
Length = 758
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 724 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 665
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 664 atagtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 615
>gb|BQ802729.1|BQ802729 WHE2829_D02_G03ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2829_D02_G03, mRNA
sequence
Length = 731
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 713 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 654
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 653 atagtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 604
>gb|BQ803114.1|BQ803114 WHE2833_H07_O13ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2833_H07_O13, mRNA
sequence
Length = 769
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 697 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 638
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 637 atagtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 588
>gb|BQ803663.1|BQ803663 WHE2840_C05_F10ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2840_C05_F10, mRNA
sequence
Length = 669
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 591 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 532
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 531 atagtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 482
>gb|CD938342.1|CD938342 OV.109M06F010309 OV Triticum aestivum cDNA clone OV109M06, mRNA
sequence
Length = 711
Score = 75.8 bits (38), Expect = 3e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 613 ctcatctcgttcaggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 554
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 553 atagtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 504
>gb|BE427378.1|BE427378 PSR6368-B ITEC PSR Wheat Pericarp/Testa Library Triticum aestivum
cDNA clone PSR6368-B, mRNA sequence
Length = 640
Score = 69.9 bits (35), Expect = 2e-010
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| |||||||||| ||||| ||||| || ||||| || |||||||| |
Sbjct: 568 ctcatctcgttcaggcattccaaatggatcgtgtgcccncagtgcagtacgctgatgtcc 509
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 508 atggtcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 459
>gb|BJ246264.1|BJ246264 BJ246264 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf22d02 5', mRNA sequence
Length = 599
Score = 67.9 bits (34), Expect = 7e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 546 tcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct: 596 tcgagtcaaatagatactcgaagcagacagggcagttgtgatgcat 551
>gb|BJ278362.1|BJ278362 BJ278362 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr15n23 5', mRNA sequence
Length = 680
Score = 67.9 bits (34), Expect = 7e-010
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 494 aggcattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcg 553
|||||||||| ||||| ||||| |||||||| || |||||||| | | |||||||
Sbjct: 679 aggcattccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatagtcgagtca 620
Query: 554 aatagatactccatgcagacagggcagttgtgatgcat 591
||||| ||||| | ||||||||||||||||||||||||
Sbjct: 619 aataggtactcgaagcagacagggcagttgtgatgcat 582
>gb|BG905457.1|BG905457 TaLr1139H04F TaLr1 Triticum aestivum cDNA clone TaLr1139H04 3',
mRNA sequence
Length = 684
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || ||||||||| |||||||| ||||| ||||| ||||||| || ||
Sbjct: 605 cgcccctcgtctccctggtgttgtaggagctgcacccaggacacttttgcgccaggacgt 664
Query: 309 ggaa 312
||||
Sbjct: 665 ggaa 668
>gb|BG907517.1|BG907517 TaLr1160F07R TaLr1 Triticum aestivum cDNA clone TaLr1160F07 5',
mRNA sequence
Length = 757
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 546 tcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 738 tcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 693
>gb|BM137287.1|BM137287 WHE2631_H12_P23ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2631_H12_P23,
mRNA sequence
Length = 610
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 546 tcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||||| ||||| ||||| | ||||||||||||||||||||||||
Sbjct: 587 tcgagtcaaataggtactcgaagcagacagggcagttgtgatgcat 542
>gb|CA485010.1|CA485010 WHE4313_C12_E23ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4313_C12_E23, mRNA sequence
Length = 319
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 252 ccctcgtctgccgggtgttgtaagagctgcatccagggcactt 294
||||||||| |||||||||||| |||||||| || ||||||||
Sbjct: 72 ccctcgtctcccgggtgttgtaggagctgcacccggggcactt 30
>gb|BE415572.1|BE415572 MWL035.E10000413 ITEC MWL Wheat Root Library Triticum aestivum cDNA
clone MWL035.E10, mRNA sequence
Length = 348
Score = 48.1 bits (24), Expect = 7e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 568 gcagacagggcagttgtgatgcat 591
||||||||||||||||||||||||
Sbjct: 345 gcagacagggcagttgtgatgcat 322
>gb|CA647683.1|CA647683 wre1n.pk0121.e3 wre1n Triticum aestivum cDNA clone wre1n.pk0121.e3
5' end, mRNA sequence
Length = 625
Score = 48.1 bits (24), Expect = 7e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 568 gcagacagggcagttgtgatgcat 591
||||||||||||||||||||||||
Sbjct: 416 gcagacagggcagttgtgatgcat 393
>gb|CV769037.1|CV769037 FGAS063428 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 834
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 568 gcagacagggcagttgtgat 587
||||||||||||||||||||
Sbjct: 732 gcagacagggcagttgtgat 713
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,125
Number of Sequences: 636343
Number of extensions: 94125
Number of successful extensions: 23106
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23063
Number of HSP's gapped (non-prelim): 43
length of query: 592
length of database: 367,240,239
effective HSP length: 19
effective length of query: 573
effective length of database: 355,149,722
effective search space: 203500790706
effective search space used: 203500790706
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)