BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA487081.1|CA487081 WHE4340_D04_H08ZS Wheat meiotic anth... 410 e-113
gb|BJ209470.1|BJ209470 BJ209470 Y. Ogihara unpublished cDNA... 383 e-104
gb|BJ303982.1|BJ303982 BJ303982 Y. Ogihara unpublished cDNA... 383 e-104
gb|BJ309895.1|BJ309895 BJ309895 Y. Ogihara unpublished cDNA... 383 e-104
gb|BJ313769.1|BJ313769 BJ313769 Y. Ogihara unpublished cDNA... 383 e-104
gb|BJ313953.1|BJ313953 BJ313953 Y. Ogihara unpublished cDNA... 383 e-104
gb|CA599416.1|CA599416 waw1c.pk002.i24 waw1c Triticum aesti... 383 e-104
gb|CA599448.1|CA599448 waw1c.pk002.c14 waw1c Triticum aesti... 383 e-104
gb|CA742076.1|CA742076 wet1c.pk001.b15 wet1c Triticum aesti... 383 e-104
gb|CD871979.1|CD871979 AZO2.119I13F010207 AZO2 Triticum aes... 367 e-100
gb|BE416354.1|BE416354 MUG007.G10R990628 ITEC MUG Wheat Spi... 359 2e-097
gb|BE416565.1|BE416565 MUG009.A03R990107 ITEC MUG Wheat Spi... 359 2e-097
gb|BE417741.1|BE417741 MUG024.A06R990620 ITEC MUG Wheat Spi... 359 2e-097
gb|BJ260026.1|BJ260026 BJ260026 Y. Ogihara unpublished cDNA... 359 2e-097
gb|BJ265740.1|BJ265740 BJ265740 Y. Ogihara unpublished cDNA... 359 2e-097
gb|BQ838808.1|BQ838808 WHE3592_H12_O24ZS Wheat developing g... 359 2e-097
emb|AJ606021.1| Triticum aestivum mRNA for putative cyclin-... 357 7e-097
gb|CA497509.1|CA497509 WHE3228_G07_N14ZT Wheat meiotic anth... 351 5e-095
gb|CD928782.1|CD928782 GR45.105P03F010319 GR45 Triticum aes... 351 5e-095
gb|BE417384.1|BE417384 MUG020.D11R990620 ITEC MUG Wheat Spi... 343 1e-092
gb|CD937935.1|CD937935 OV.108I19F010206 OV Triticum aestivu... 337 7e-091
gb|BF485399.1|BF485399 WHE2311_B08_D15ZS Wheat pre-anthesis... 327 7e-088
gb|BJ216907.1|BJ216907 BJ216907 Y. Ogihara unpublished cDNA... 323 1e-086
gb|BJ322862.1|BJ322862 BJ322862 Y. Ogihara unpublished cDNA... 274 9e-072
gb|AL831114.1|AL831114 AL831114 q:242 Triticum aestivum cDN... 94 2e-017
gb|BJ317315.1|BJ317315 BJ317315 Y. Ogihara unpublished cDNA... 60 2e-007
gb|BE416502.1|BE416502 MUG011.D09R990407 ITEC MUG Wheat Spi... 56 4e-006
gb|CV973184.1|CV973184 C01_q444_2 q:444 Triticum aestivum c... 44 0.014
gb|BJ207888.1|BJ207888 BJ207888 Y. Ogihara unpublished cDNA... 42 0.056
gb|BQ169470.1|BQ169470 WHE2311_B08_D15ZT Wheat pre-anthesis... 42 0.056
gb|CA727583.1|CA727583 wdi1c.pk001.j10 wdi1c Triticum aesti... 42 0.056
gb|BF292982.1|BF292982 WHE2163_E03_I05ZS Triticum turgidum ... 40 0.22
gb|CA722275.1|CA722275 wds1c.pk003.p12.f wds1c Triticum mon... 40 0.22
gb|CA722743.1|CA722743 wds1c.pk004.g12.f wds1c Triticum mon... 40 0.22
>gb|CA487081.1|CA487081 WHE4340_D04_H08ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4340_D04_H08, mRNA sequence
Length = 479
Score = 410 bits (207), Expect = e-113
Identities = 231/239 (96%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 154
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 155 gtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctccgagaacgag 214
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 215 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccggccg 274
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggcggc 336
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 275 gagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcaggaggcggc 333
>gb|BJ209470.1|BJ209470 BJ209470 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh14f06 5', mRNA sequence
Length = 643
Score = 383 bits (193), Expect = e-104
Identities = 235/249 (94%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 70 ggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacag 129
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 130 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccga 189
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct: 190 gaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtcca 249
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 250 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 309
Query: 331 ggcggctgc 339
||||||||
Sbjct: 310 cgcggctgc 318
>gb|BJ303982.1|BJ303982 BJ303982 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd21p22 5', mRNA sequence
Length = 561
Score = 383 bits (193), Expect = e-104
Identities = 235/249 (94%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 57 ggtggacatgggccagatccagtactccgagaagtacttcgacgacacctgcgagtacag 116
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 117 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccga 176
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct: 177 gaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtcca 236
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 237 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 296
Query: 331 ggcggctgc 339
||||||||
Sbjct: 297 cgcggctgc 305
>gb|BJ309895.1|BJ309895 BJ309895 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd21p22 3', mRNA sequence
Length = 559
Score = 383 bits (193), Expect = e-104
Identities = 235/249 (94%)
Strand = Plus / Minus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 447 ggtggacatgggccagatccagtactccgagaagtacttcgacgacacctgcgagtacag 388
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 387 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccga 328
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct: 327 gaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtcca 268
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 267 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 208
Query: 331 ggcggctgc 339
||||||||
Sbjct: 207 cgcggctgc 199
>gb|BJ313769.1|BJ313769 BJ313769 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf7f16 5', mRNA sequence
Length = 626
Score = 383 bits (193), Expect = e-104
Identities = 235/249 (94%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 57 ggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacag 116
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 117 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccga 176
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct: 177 gaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtcca 236
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 237 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 296
Query: 331 ggcggctgc 339
||||||||
Sbjct: 297 cgcggctgc 305
>gb|BJ313953.1|BJ313953 BJ313953 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf8f16 5', mRNA sequence
Length = 585
Score = 383 bits (193), Expect = e-104
Identities = 235/249 (94%)
Strand = Plus / Minus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 518 ggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacag 459
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 458 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccga 399
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct: 398 gaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtcca 339
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 338 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 279
Query: 331 ggcggctgc 339
||||||||
Sbjct: 278 cgcggctgc 270
>gb|CA599416.1|CA599416 waw1c.pk002.i24 waw1c Triticum aestivum cDNA clone waw1c.pk002.i24
5' end, mRNA sequence
Length = 532
Score = 383 bits (193), Expect = e-104
Identities = 235/249 (94%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 119 ggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacag 178
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 179 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccga 238
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct: 239 gaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtcca 298
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 299 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 358
Query: 331 ggcggctgc 339
||||||||
Sbjct: 359 cgcggctgc 367
>gb|CA599448.1|CA599448 waw1c.pk002.c14 waw1c Triticum aestivum cDNA clone waw1c.pk002.c14
5' end, mRNA sequence
Length = 581
Score = 383 bits (193), Expect = e-104
Identities = 235/249 (94%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 119 ggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacag 178
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 179 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccga 238
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct: 239 gaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtcca 298
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 299 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 358
Query: 331 ggcggctgc 339
||||||||
Sbjct: 359 cgcggctgc 367
>gb|CA742076.1|CA742076 wet1c.pk001.b15 wet1c Triticum aestivum cDNA clone wet1c.pk001.b15
5' end, mRNA sequence
Length = 626
Score = 383 bits (193), Expect = e-104
Identities = 235/249 (94%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 113 ggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacag 172
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 173 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccga 232
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct: 233 gaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtcca 292
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 293 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 352
Query: 331 ggcggctgc 339
||||||||
Sbjct: 353 cgcggctgc 361
>gb|CD871979.1|CD871979 AZO2.119I13F010207 AZO2 Triticum aestivum cDNA clone AZO2119I13,
mRNA sequence
Length = 351
Score = 367 bits (185), Expect = e-100
Identities = 224/237 (94%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 113 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 172
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 173 cgtcgtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccgagaa 232
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||| ||||||||||||||||| |||||||
Sbjct: 233 cgagtggcgcgcgctgggcgtgcagcagagccgtgggtgggtgcactacgccgtccaccg 292
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 293 gccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 349
>gb|BE416354.1|BE416354 MUG007.G10R990628 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG007.G10, mRNA sequence
Length = 550
Score = 359 bits (181), Expect = 2e-097
Identities = 232/249 (93%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 112 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 171
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 172 cgtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaa 231
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 232 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccg 291
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 292 gccggagccgcacatcatgctgttccgccgcccactcaactaccagcagcagcaggacgc 351
Query: 334 ggctgccgc 342
||| |||||
Sbjct: 352 ggcggccgc 360
>gb|BE416565.1|BE416565 MUG009.A03R990107 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG009.A03, mRNA sequence
Length = 616
Score = 359 bits (181), Expect = 2e-097
Identities = 232/249 (93%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 104 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 163
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 164 cgtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaa 223
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 224 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccg 283
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 284 gccggagccgcacatcatgctgttccgccgcccactcaactaccagcagcagcaggacgc 343
Query: 334 ggctgccgc 342
||| |||||
Sbjct: 344 ggcggccgc 352
>gb|BE417741.1|BE417741 MUG024.A06R990620 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG024.A06, mRNA sequence
Length = 500
Score = 359 bits (181), Expect = 2e-097
Identities = 232/249 (93%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 104 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 163
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 164 cgtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaa 223
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 224 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccg 283
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 284 gccggagccgcacatcatgctgttccgccgcccactcaactaccagcagcagcaggacgc 343
Query: 334 ggctgccgc 342
||| |||||
Sbjct: 344 ggcggccgc 352
>gb|BJ260026.1|BJ260026 BJ260026 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh23d02 5', mRNA sequence
Length = 614
Score = 359 bits (181), Expect = 2e-097
Identities = 232/249 (93%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 105 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 164
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 165 cgtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaa 224
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 225 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccg 284
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 285 gccggagccgcacatcatgctgttccgccgcccactcaactaccagcagcagcaggacgc 344
Query: 334 ggctgccgc 342
||| |||||
Sbjct: 345 ggcggccgc 353
>gb|BJ265740.1|BJ265740 BJ265740 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh23d02 3', mRNA sequence
Length = 566
Score = 359 bits (181), Expect = 2e-097
Identities = 232/249 (93%)
Strand = Plus / Minus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 462 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 403
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 402 cgtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaa 343
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 342 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccg 283
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 282 gccggagccgcacatcatgctgttccgccgcccactcaactaccagcagcagcaggacgc 223
Query: 334 ggctgccgc 342
||| |||||
Sbjct: 222 ggcggccgc 214
>gb|BQ838808.1|BQ838808 WHE3592_H12_O24ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3592_H12_O24, mRNA sequence
Length = 622
Score = 359 bits (181), Expect = 2e-097
Identities = 232/249 (93%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 117 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 176
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 177 cgtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaa 236
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 237 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccg 296
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 297 gccggagccgcacatcatgctgttccgccgcccactcaactaccagcagcagcaggacgc 356
Query: 334 ggctgccgc 342
||| |||||
Sbjct: 357 ggcggccgc 365
>emb|AJ606021.1| Triticum aestivum mRNA for putative cyclin-dependent kinase
regulatory subunit (osjnba0067N01.15 gene)
Length = 441
Score = 357 bits (180), Expect = 7e-097
Identities = 231/248 (93%)
Strand = Plus / Plus
Query: 95 gacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcac 154
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 gacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggcac 60
Query: 155 gtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaac 214
|| ||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 61 gtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaac 120
Query: 215 gagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgc 274
|||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 121 gagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccgg 180
Query: 275 ccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggcg 334
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 181 ccggagccgcacatcatgctgttccgccgcccactcaactaccagcagcagcaggacgcg 240
Query: 335 gctgccgc 342
|| |||||
Sbjct: 241 gcggccgc 248
>gb|CA497509.1|CA497509 WHE3228_G07_N14ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3228_G07_N14, mRNA sequence
Length = 355
Score = 351 bits (177), Expect = 5e-095
Identities = 222/237 (93%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 117 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 176
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 177 cgtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaa 236
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 237 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccg 296
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 297 gccggagccgcacatcatgctgttccgccgcccactcaactaccagcagcagcagga 353
>gb|CD928782.1|CD928782 GR45.105P03F010319 GR45 Triticum aestivum cDNA clone GR45105P03,
mRNA sequence
Length = 260
Score = 351 bits (177), Expect = 5e-095
Identities = 222/237 (93%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 22 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 81
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 82 cgtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaa 141
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 142 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccg 201
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 gccggagccgcacatcatgctgttccgccgcccactcaactaccagcagcagcagga 258
>gb|BE417384.1|BE417384 MUG020.D11R990620 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG020.D11, mRNA sequence
Length = 616
Score = 343 bits (173), Expect = 1e-092
Identities = 231/249 (92%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 104 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 163
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 164 cgtggtcctcccgccggaagtcgccaagctgctccccaagaaccgcctcctcgccgagaa 223
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 224 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccg 283
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct: 284 gccggagccgcacatcatgctgttccgccg-ccactcaactaccagcagcagcaggacgc 342
Query: 334 ggctgccgc 342
||| |||||
Sbjct: 343 ggcggccgc 351
>gb|CD937935.1|CD937935 OV.108I19F010206 OV Triticum aestivum cDNA clone OV108I19, mRNA
sequence
Length = 258
Score = 337 bits (170), Expect = 7e-091
Identities = 223/238 (93%), Gaps = 2/238 (0%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgac-gacacctacgagtacaggc 152
||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct: 20 ggacatgggccagatccagtactccgagaag-acttcgacagacaccttcgagtacaggc 78
Query: 153 acgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgaga 212
|||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 79 acgtcgtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccgaga 138
Query: 213 acgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccacc 272
|||||||||||||| | || |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 139 acgagtggcgcgcgctgggcgtgcagcagagccgtgggtgggtgcactacgccgtccacc 198
Query: 273 gcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 199 ggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 256
>gb|BF485399.1|BF485399 WHE2311_B08_D15ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2311_B08_D15, mRNA sequence
Length = 429
Score = 327 bits (165), Expect = 7e-088
Identities = 229/249 (91%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 107 ggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacag 166
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || |||||||||||||||||||||| | |||||| ||||
Sbjct: 167 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagagggggctcctcgccga 226
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || ||||||||||| ||||||||||||||||||| ||||
Sbjct: 227 gaacgagtggcgcgcgctgggcgtgcagcagag-ggcgggtgggtgcactacgccgtcca 285
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 286 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 345
Query: 331 ggcggctgc 339
||||||||
Sbjct: 346 cgcggctgc 354
>gb|BJ216907.1|BJ216907 BJ216907 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh14f06 3', mRNA sequence
Length = 677
Score = 323 bits (163), Expect = 1e-086
Identities = 202/215 (93%)
Strand = Plus / Minus
Query: 125 tacttcgacgacacctacgagtacaggcacgtcgtcctcccgcccgaggtcgccaagctc 184
|||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 677 tacttcgacgacaccttcgagtacaggcacgtggtcctcccgccggaagtcgccaagctc 618
Query: 185 ctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatcggagtgcagcagagc 244
||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||||
Sbjct: 617 ctccccaagaaccgcctcctcgccgagaacgagtggcgcgcgctgggcgtgcagcagagc 558
Query: 245 cgcgggtgggtgcactacgcgatccaccgcccggagccgcacatcatgctgttccgccgc 304
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 557 cgcgggtgggtgcactacgccgtccaccggccggagccgcacatcatgctgttccgccgc 498
Query: 305 ccgatcaactaccagcagcagcaggaggcggctgc 339
||| |||||||||||||||||||||| ||||||||
Sbjct: 497 ccgctcaactaccagcagcagcaggacgcggctgc 463
>gb|BJ322862.1|BJ322862 BJ322862 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf27i23 3', mRNA sequence
Length = 421
Score = 274 bits (138), Expect = 9e-072
Identities = 171/182 (93%)
Strand = Plus / Minus
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 420 gtcctcccgccggaagtcgccaagctcctccccaagaaccgcctcctcgccgagaacgag 361
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||||||| | || |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 360 tggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactacgccgtccaccggccg 301
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggcggct 337
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 300 gagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcaggacgcggct 241
Query: 338 gc 339
||
Sbjct: 240 gc 239
>gb|AL831114.1|AL831114 AL831114 q:242 Triticum aestivum cDNA clone B12_q242_plate_1, mRNA
sequence
Length = 290
Score = 93.7 bits (47), Expect = 2e-017
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcag-cagcag 328
|||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1 accggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagtcagcaa 60
Query: 329 gaggcggctgc 339
|| ||||||||
Sbjct: 61 gacgcggctgc 71
>gb|BJ317315.1|BJ317315 BJ317315 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf27i23 5', mRNA sequence
Length = 179
Score = 60.0 bits (30), Expect = 2e-007
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaag 124
|||||||||||| |||||||||||||||||||||
Sbjct: 131 ggtggacatgggccagatccagtactccgagaag 164
>gb|BE416502.1|BE416502 MUG011.D09R990407 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG011.D09, mRNA sequence
Length = 486
Score = 56.0 bits (28), Expect = 4e-006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 300 gccgcccgatcaactaccagcagcagcaggaggcggctgc 339
|||||||| |||||||||||| |||||||| ||||||||
Sbjct: 1 gccgcccgctcaactaccagcwgcagcaggwygcggctgc 40
>gb|CV973184.1|CV973184 C01_q444_2 q:444 Triticum aestivum cDNA, mRNA sequence
Length = 328
Score = 44.1 bits (22), Expect = 0.014
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 293 ctgttccgccgcccgatcaactaccagcag 322
|||||||||||||| ||||||||||||||
Sbjct: 2 ctgttccgccgcccactcaactaccagcag 31
>gb|BJ207888.1|BJ207888 BJ207888 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh5n06 5', mRNA sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 315 accagcagcagcaggaggcggctgccgcg 343
|||||||||||||| ||||||| ||||||
Sbjct: 142 accagcagcagcagcaggcggcggccgcg 170
>gb|BQ169470.1|BQ169470 WHE2311_B08_D15ZT Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2311_B08_D15, mRNA sequence
Length = 560
Score = 42.1 bits (21), Expect = 0.056
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 315 accagcagcagcaggaggcggctgc 339
|||||||||||||||| ||||||||
Sbjct: 560 accagcagcagcaggacgcggctgc 536
>gb|CA727583.1|CA727583 wdi1c.pk001.j10 wdi1c Triticum aestivum cDNA clone wdi1c.pk001.j10
5' end, mRNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 315 accagcagcagcaggaggcggctgccgcg 343
|||||||||||||| ||||||| ||||||
Sbjct: 192 accagcagcagcagcaggcggcggccgcg 220
>gb|BF292982.1|BF292982 WHE2163_E03_I05ZS Triticum turgidum L. var. durum (durum wheat)
whole plant cDNA library Triticum turgidum cDNA clone
WHE2163_E03_I05, mRNA sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 315 accagcagcagcaggaggcggctgccgc 342
|||||||||||||| ||||||| |||||
Sbjct: 239 accagcagcagcagcaggcggcggccgc 266
>gb|CA722275.1|CA722275 wds1c.pk003.p12.f wds1c Triticum monococcum cDNA clone
wds1c.pk003.p12.f 3' end, mRNA sequence
Length = 266
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 189 ccaagaaccgcctcctctcc 208
||||||||||||||||||||
Sbjct: 203 ccaagaaccgcctcctctcc 184
>gb|CA722743.1|CA722743 wds1c.pk004.g12.f wds1c Triticum monococcum cDNA clone
wds1c.pk004.g12.f 3' end, mRNA sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 189 ccaagaaccgcctcctctcc 208
||||||||||||||||||||
Sbjct: 269 ccaagaaccgcctcctctcc 250
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 211,254
Number of Sequences: 636343
Number of extensions: 211254
Number of successful extensions: 72715
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72607
Number of HSP's gapped (non-prelim): 102
length of query: 779
length of database: 367,240,239
effective HSP length: 19
effective length of query: 760
effective length of database: 355,149,722
effective search space: 269913788720
effective search space used: 269913788720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)