BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2835489.2.1
(885 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ172126.1|BQ172126 WHE1705-1708_K07_K07ZY Wheat heat st... 287 6e-076
gb|CA635096.1|CA635096 wle1n.pk0092.e5 wle1n Triticum aesti... 137 1e-030
gb|CK193605.1|CK193605 FGAS002019 Triticum aestivum FGAS: L... 76 5e-012
gb|BF429129.1|BF429129 WHE1705-1708_K07_K07ZS Wheat heat st... 70 3e-010
gb|CK193941.1|CK193941 FGAS002360 Triticum aestivum FGAS: L... 56 4e-006
>gb|BQ172126.1|BQ172126 WHE1705-1708_K07_K07ZY Wheat heat stressed spike cDNA library
Triticum aestivum cDNA clone WHE1705-1708_K07_K07, mRNA
sequence
Length = 525
Score = 287 bits (145), Expect = 6e-076
Identities = 301/353 (85%)
Strand = Plus / Plus
Query: 111 aacatttttagcccatatccaacagggaatagcgggtcatagttagagtctccagcatct 170
|||||||| | ||||||||||| |||||| | || |||||||||| |||||| ||| |
Sbjct: 140 aacattttcaacccatatccaaaagggaacaagggatcatagttagcatctccaacattt 199
Query: 171 ataggcaattgatcaacagacttacaccatgtcacaggcaatgtgcccacaaaatcatga 230
||||||| ||||||| |||| || |||| | ||||||||||| ||||| |||||||||
Sbjct: 200 ataggcagttgatcagaagacctaaaccacgatacaggcaatgtacccacgaaatcatga 259
Query: 231 tctccaaagaggcaatcggtaattcccatgccctcacttccaggcagccaggcagcgact 290
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 260 tctccaaagaggcaatcagtaattcccatgccctcacttccaggtagccaggcagcaact 319
Query: 291 agagcttctatcttttccaaaacttgtgactcaataattaatggccttccagatataaca 350
||||| |||||||| |||| |||||||| ||||||| || ||||||||||||| ||||
Sbjct: 320 agagcatctatcttctccagaacttgtggttcaataaccaagggccttccagatacaaca 379
Query: 351 atcactagggtagggattttacttgcaacacggatgataaggtcagagccattaaacgga 410
| |||||| ||||||| |||||| |||||||| | || ||||| || |||||||| ||
Sbjct: 380 accactagagtagggactttactagcaacacgagtaatcaggtctgaaccattaaatggg 439
Query: 411 atactaaggtcagttctatctcctgtccattcggcatatggaacctctccaac 463
||||||||||||||||||||||| || ||| ||||| |||||||| |||||
Sbjct: 440 atactaaggtcagttctatctcccaacctttcagcataaggaacctcaccaac 492
>gb|CA635096.1|CA635096 wle1n.pk0092.e5 wle1n Triticum aestivum cDNA clone wle1n.pk0092.e5
5' end, mRNA sequence
Length = 634
Score = 137 bits (69), Expect = 1e-030
Identities = 181/216 (83%), Gaps = 2/216 (0%)
Strand = Plus / Plus
Query: 160 ctccagcatctataggcaattgatcaacagacttacaccatgtcacaggcaatgtgccca 219
|||||| || |||||| | ||||||| ||||| || |||| || ||||||||||| ||||
Sbjct: 117 ctccagtatttataggaagttgatcatcagacctaaaccaagttacaggcaatgttccca 176
Query: 220 caaaatcatgatctccaaagaggcaatc-ggtaattcccatgccctcacttccaggcagc 278
|||||||||| ||||||||||||||||| | || |||||| || |||||||||||||||
Sbjct: 177 caaaatcatggtctccaaagaggcaatcaagcaactcccattccttcacttccaggcagc 236
Query: 279 caggcagcgact-agagcttctatcttttccaaaacttgtgactcaataattaatggcct 337
|| ||||| ||| ||||| |||| ||| || | |||||| | |||||||| ||| ||| |
Sbjct: 237 caagcagcaactaagagcatctaccttctcaagaacttgcggctcaataactaagggctt 296
Query: 338 tccagatataacaatcactagggtagggattttact 373
| ||| ||||||||||||| |||||||| ||||||
Sbjct: 297 ccaagaaataacaatcactanggtagggactttact 332
>gb|CK193605.1|CK193605 FGAS002019 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 838
Score = 75.8 bits (38), Expect = 5e-012
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 160 ctccagcatctataggcaattgatcaacagacttacaccatgtcacaggcaatgtgccca 219
|||||| || |||||| | ||||||| ||||| || |||| || ||||||||||| ||||
Sbjct: 338 ctccagtatttataggaagttgatcatcagacctaaaccaagttacaggcaatgttccca 397
Query: 220 caaaatcatgatctccaaagag 241
|||||||||| |||||||||||
Sbjct: 398 caaaatcatggtctccaaagag 419
>gb|BF429129.1|BF429129 WHE1705-1708_K07_K07ZS Wheat heat stressed spike cDNA library
Triticum aestivum cDNA clone WHE1705-1708_K07_K07, mRNA
sequence
Length = 522
Score = 69.9 bits (35), Expect = 3e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 819 gaaaatggatgctcaaacactccagaaataaacttaaccctcagaat 865
|||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 522 gaaaatggatgctcaaacactccagatatgaacttaacccttagaat 476
>gb|CK193941.1|CK193941 FGAS002360 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 834
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 339 ccagatataacaatcactagggtagggattttacttgcaa 378
||||| |||||||||||||||||||||| |||||| ||||
Sbjct: 135 ccagaaataacaatcactagggtagggactttactggcaa 174
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,346
Number of Sequences: 636343
Number of extensions: 136346
Number of successful extensions: 39256
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39246
Number of HSP's gapped (non-prelim): 8
length of query: 885
length of database: 367,240,239
effective HSP length: 19
effective length of query: 866
effective length of database: 355,149,722
effective search space: 307559659252
effective search space used: 307559659252
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)