BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542042.2.1
(691 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ208395.1|BJ208395 BJ208395 Y. Ogihara unpublished cDNA... 40 0.20
gb|BJ211752.1|BJ211752 BJ211752 Y. Ogihara unpublished cDNA... 40 0.20
gb|BJ212374.1|BJ212374 BJ212374 Y. Ogihara unpublished cDNA... 40 0.20
gb|BJ215668.1|BJ215668 BJ215668 Y. Ogihara unpublished cDNA... 40 0.20
gb|BJ219198.1|BJ219198 BJ219198 Y. Ogihara unpublished cDNA... 40 0.20
gb|BJ219833.1|BJ219833 BJ219833 Y. Ogihara unpublished cDNA... 40 0.20
gb|BJ220359.1|BJ220359 BJ220359 Y. Ogihara unpublished cDNA... 40 0.20
gb|BJ264061.1|BJ264061 BJ264061 Y. Ogihara unpublished cDNA... 40 0.20
gb|CA595372.1|CA595372 wpa1c.pk009.k17 wpa1c Triticum aesti... 40 0.20
gb|CK207501.1|CK207501 FGAS019125 Triticum aestivum FGAS: L... 40 0.20
gb|CK207505.1|CK207505 FGAS019129 Triticum aestivum FGAS: L... 40 0.20
>gb|BJ208395.1|BJ208395 BJ208395 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh8b13 5', mRNA sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 589 tacgtggtggcgcccaacgg 608
>gb|BJ211752.1|BJ211752 BJ211752 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh33a16 5', mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 584 tacgtggtggcgcccaacgg 603
>gb|BJ212374.1|BJ212374 BJ212374 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh17d05 5', mRNA sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 16 tacgtggtggcgcccaacgg 35
>gb|BJ215668.1|BJ215668 BJ215668 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh8b13 3', mRNA sequence
Length = 531
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 472 tacgtggtggcgcccaacgg 453
>gb|BJ219198.1|BJ219198 BJ219198 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh33a16 3', mRNA sequence
Length = 778
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 483 tacgtggtggcgcccaacgg 464
>gb|BJ219833.1|BJ219833 BJ219833 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh17d05 3', mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 463 tacgtggtggcgcccaacgg 444
>gb|BJ220359.1|BJ220359 BJ220359 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh19k05 3', mRNA sequence
Length = 751
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 485 tacgtggtggcgcccaacgg 466
>gb|BJ264061.1|BJ264061 BJ264061 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh7m01 3', mRNA sequence
Length = 729
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 463 tacgtggtggcgcccaacgg 444
>gb|CA595372.1|CA595372 wpa1c.pk009.k17 wpa1c Triticum aestivum cDNA clone wpa1c.pk009.k17
5' end, mRNA sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 594 tacgtggtggcgcccaacgg 613
>gb|CK207501.1|CK207501 FGAS019125 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1119
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 579 tacgtggtggcgcccaacgg 598
>gb|CK207505.1|CK207505 FGAS019129 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1142
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 tacgtggtggcgcccaacgg 174
||||||||||||||||||||
Sbjct: 578 tacgtggtggcgcccaacgg 597
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 160,805
Number of Sequences: 636343
Number of extensions: 160805
Number of successful extensions: 45244
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45219
Number of HSP's gapped (non-prelim): 25
length of query: 691
length of database: 367,240,239
effective HSP length: 19
effective length of query: 672
effective length of database: 355,149,722
effective search space: 238660613184
effective search space used: 238660613184
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)