BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21b10.yg.2.1
(574 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW173784.1|CW173784 104_585_11157034_148_36551_037 Sorgh... 248 5e-064
gb|CW486925.1|CW486925 fsbb001f252h17f0 Sorghum methylation... 248 5e-064
gb|AF466200.2| Sorghum bicolor putative protein kinase gene... 248 5e-064
gb|CW044337.1|CW044337 104_280_10508891_115_30242 Sorghum m... 230 1e-058
gb|CW098045.1|CW098045 104_464_11002794_116_34363_073 Sorgh... 230 1e-058
gb|BI098036.1|BI098036 IP1_31_C06.g1_A002 Immature pannicle... 194 6e-048
gb|BF656435.1|BF656435 FM1_45_G12.g2_A003 Floral-Induced Me... 186 2e-045
gb|CW098046.1|CW098046 104_464_11002794_148_34367_073 Sorgh... 172 2e-041
gb|CW486926.1|CW486926 fsbb001f252h17k0 Sorghum methylation... 172 2e-041
gb|BG049824.1|BG049824 FM1_66_C11.g1_A003 Floral-Induced Me... 165 6e-039
gb|CW044336.1|CW044336 104_280_10508891_114_30268 Sorghum m... 80 3e-013
gb|CW173783.1|CW173783 104_585_11157034_116_36552_037 Sorgh... 76 4e-012
gb|CN127712.1|CN127712 RHOH1_24_D05.g3_A002 Acid- and alkal... 74 2e-011
gb|CW135635.1|CW135635 104_520_11117953_116_34836_009 Sorgh... 66 4e-009
gb|CW209770.1|CW209770 104_640_11189431_116_37430_032 Sorgh... 66 4e-009
gb|CW241144.1|CW241144 104_700_11218605_148_37542_093 Sorgh... 54 1e-005
gb|CD222290.1|CD222290 CCC1_21_D09.b1_A007 Callus culture/c... 54 1e-005
gb|CF072395.1|CF072395 FE1_2_F08.g1_A002 Iron-deficient see... 48 9e-004
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 42 0.055
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.22
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.22
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.22
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.22
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.22
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.22
>gb|CW173784.1|CW173784 104_585_11157034_148_36551_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157034, DNA
sequence
Length = 683
Score = 248 bits (125), Expect = 5e-064
Identities = 166/179 (92%), Gaps = 3/179 (1%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 219 ggtccagaacttgactgctgcaaacatcatgaaatgcgacgatgatacatttgtgagagt 278
Query: 236 agatgtagttctgagacgcatcaagttg---aacaatggtgacaaaccattatatatggg 292
|||| | |||||||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct: 279 agatatggttctgagacacatcaagttgaataataatggtgacaaaccattatatatggg 338
Query: 293 gaaccttaacctcctgcacagaccattgaggactggaaaatgggcagttacagacgagg 351
||||||||||||| |||| |||||| |||| |||||||||||||||||||||| |||||
Sbjct: 339 gaaccttaacctcttgcatagaccactgagaactggaaaatgggcagttacaggcgagg 397
Score = 157 bits (79), Expect = 1e-036
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 557 aggagtggcctgaggatatctacccaccatatgcaaatggaccaggctatgtgatttccg 616
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgcc 443
|||||||||||||||||||||||||||||| ||||
Sbjct: 617 gtgacatagcaaaattcatcgtgtcacagcatgcc 651
>gb|CW486925.1|CW486925 fsbb001f252h17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252h17, DNA
sequence
Length = 703
Score = 248 bits (125), Expect = 5e-064
Identities = 166/179 (92%), Gaps = 3/179 (1%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 13 ggtccagaacttgactgctgcaaacatcatgaaatgcgacgatgatacatttgtgagagt 72
Query: 236 agatgtagttctgagacgcatcaagttg---aacaatggtgacaaaccattatatatggg 292
|||| | |||||||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct: 73 agatatggttctgagacacatcaagttgaataataatggtgacaaaccattatatatggg 132
Query: 293 gaaccttaacctcctgcacagaccattgaggactggaaaatgggcagttacagacgagg 351
||||||||||||| |||| |||||| |||| |||||||||||||||||||||| |||||
Sbjct: 133 gaaccttaacctcttgcatagaccactgagaactggaaaatgggcagttacaggcgagg 191
Score = 172 bits (87), Expect = 2e-041
Identities = 99/103 (96%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 351 aggagtggcctgaggatatctacccaccatatgcaaatggaccaggctatgtgatttccg 410
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 411 gtgacatagcaaaattcatcgtgtcacagcatgccaatcagag 453
Score = 75.8 bits (38), Expect = 4e-012
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 459 ctgtttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaattcaacanat 518
|||||| |||||||||||||||| ||||| |||||||| ||||| |||||| ||||| |
Sbjct: 542 ctgtttaagatggaagatgtaagtatgggtctatgggttgagaaattcaatgcaacaaag 601
Query: 519 nntgtnnnatattcncacagctggaa 544
||| |||||| |||||||||||
Sbjct: 602 cctgtccaatattcccacagctggaa 627
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
fertilization-independent endosperm proteins, hypothetical
protein, putative non-LTR retroelement reverse
transcriptase, OCL5 protein, tryptophan synthase
beta-subunit, hypothetical proteins, putative AP
endonuclease, putative RNA polymerase II complex component
SRB7, putative beta-1,3-glucanase, hypothetical protein,
TNP2-like protein, hypothetical protein, putative
phosphate/phosphoenolpyruvate translocator, putative
protein, hypothetical proteins, putative
galactosyltransferase family, hypothetical protein,
putative cytochrome P450 family, putative lipid transfer
protein, putative photoreceptor-interacting protein, and
hypothetical protein genes, complete cds; and hypothetical
protein gene, partial cds
Length = 202197
Score = 248 bits (125), Expect = 5e-064
Identities = 166/179 (92%), Gaps = 3/179 (1%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 170596 ggtccagaacttgactgctgcaaacatcatgaaatgcgacgatgatacatttgtgagagt 170655
Query: 236 agatgtagttctgagacgcatcaagttg---aacaatggtgacaaaccattatatatggg 292
|||| | |||||||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct: 170656 agatatggttctgagacacatcaagttgaataataatggtgacaaaccattatatatggg 170715
Query: 293 gaaccttaacctcctgcacagaccattgaggactggaaaatgggcagttacagacgagg 351
||||||||||||| |||| |||||| |||| |||||||||||||||||||||| |||||
Sbjct: 170716 gaaccttaacctcttgcatagaccactgagaactggaaaatgggcagttacaggcgagg 170774
Score = 230 bits (116), Expect = 1e-058
Identities = 128/132 (96%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 170150 gaattcaaggaaagaggtcaatgtaatgctgaagaaagaagcagaatactttggagacat 170209
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 170210 tgtcattttgccatttatagatcgctatgagctggttgttcttaagacaattgctatctg 170269
Query: 167 tgagtatggggt 178
||||||||||||
Sbjct: 170270 tgagtatggggt 170281
Score = 172 bits (87), Expect = 2e-041
Identities = 99/103 (96%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 170934 aggagtggcctgaggatatctacccaccatatgcaaatggaccaggctatgtgatttccg 170993
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 170994 gtgacatagcaaaattcatcgtgtcacagcatgccaatcagag 171036
Score = 75.8 bits (38), Expect = 4e-012
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 459 ctgtttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaattcaacanat 518
|||||| |||||||||||||||| ||||| |||||||| ||||| |||||| ||||| |
Sbjct: 171125 ctgtttaagatggaagatgtaagtatgggtctatgggttgagaaattcaatgcaacaaag 171184
Query: 519 nntgtnnnatattcncacagctggaa 544
||| |||||| |||||||||||
Sbjct: 171185 cctgtccaatattcccacagctggaa 171210
>gb|CW044337.1|CW044337 104_280_10508891_115_30242 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508891, DNA
sequence
Length = 561
Score = 230 bits (116), Expect = 1e-058
Identities = 128/132 (96%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 85 gaattcaaggaaagaggtcaatgtaatgctgaagaaagaagcagaatactttggagacat 144
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tgtcattttgccatttatagatcgctatgagctggttgttcttaagacaattgctatctg 204
Query: 167 tgagtatggggt 178
||||||||||||
Sbjct: 205 tgagtatggggt 216
Score = 61.9 bits (31), Expect = 6e-008
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatg 206
|||||||||||||||||||||||||||||||
Sbjct: 531 ggtccagaacttgactgctgcaaacatcatg 561
>gb|CW098045.1|CW098045 104_464_11002794_116_34363_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002794, DNA
sequence
Length = 593
Score = 230 bits (116), Expect = 1e-058
Identities = 128/132 (96%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 314 gaattcaaggaaagaggtcaatgtaatgctgaagaaagaagcagaatactttggagacat 373
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgtcattttgccatttatagatcgctatgagctggttgttcttaagacaattgctatctg 433
Query: 167 tgagtatggggt 178
||||||||||||
Sbjct: 434 tgagtatggggt 445
>gb|BI098036.1|BI098036 IP1_31_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 194 bits (98), Expect = 6e-048
Identities = 149/170 (87%)
Strand = Plus / Plus
Query: 375 ccatatgcaaacggaccaggctatgtgatttctggtgacatagcaaaattcatcgtgtca 434
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5 ccatatgcaaatggaccaggctatgtgatttccggtgacatagcaaaattcatcgtgtca 64
Query: 435 cagcgtgccaatcagagnntnngactgtttnagatggaagatgtaagcatgggcctatgg 494
|||| |||||||||||| | |||||||| |||||||||||||||| ||||| ||||||
Sbjct: 65 cagcatgccaatcagagtttaagactgtttaagatggaagatgtaagtatgggtctatgg 124
Query: 495 gtcgagaagttcaattcaacanatnntgtnnnatattcncacagctggaa 544
|| ||||| |||||| ||||| | ||| |||||| |||||||||||
Sbjct: 125 gttgagaaattcaatgcaacaaagcctgtccaatattcccacagctggaa 174
>gb|BF656435.1|BF656435 FM1_45_G12.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 633
Score = 186 bits (94), Expect = 2e-045
Identities = 139/158 (87%)
Strand = Plus / Plus
Query: 387 ggaccaggctatgtgatttctggtgacatagcaaaattcatcgtgtcacagcgtgccaat 446
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 4 ggaccaggctatgtgatttccggtgacatagcaaaattcatcgtgtcacagcatgccaat 63
Query: 447 cagagnntnngactgtttnagatggaagatgtaagcatgggcctatgggtcgagaagttc 506
||||| | |||||||| |||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 64 cagagtttaagactgtttaagatggaagatgtaagtatgggtctatgggttgagaagttc 123
Query: 507 aattcaacanatnntgtnnnatattcncacagctggaa 544
||| ||||| | ||| |||||| |||||||||||
Sbjct: 124 aatgcaacaaagcctgtccaatattcccacagctggaa 161
>gb|CW098046.1|CW098046 104_464_11002794_148_34367_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002794, DNA
sequence
Length = 660
Score = 172 bits (87), Expect = 2e-041
Identities = 99/103 (96%)
Strand = Plus / Minus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 448 aggagtggcctgaggatatctacccaccatatgcaaatggaccaggctatgtgatttccg 389
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 388 gtgacatagcaaaattcatcgtgtcacagcatgccaatcagag 346
Score = 75.8 bits (38), Expect = 4e-012
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 459 ctgtttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaattcaacanat 518
|||||| |||||||||||||||| ||||| |||||||| ||||| |||||| ||||| |
Sbjct: 257 ctgtttaagatggaagatgtaagtatgggtctatgggttgagaaattcaatgcaacaaag 198
Query: 519 nntgtnnnatattcncacagctggaa 544
||| |||||| |||||||||||
Sbjct: 197 cctgtccaatattcccacagctggaa 172
Score = 65.9 bits (33), Expect = 4e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 299 taacctcctgcacagaccattgaggactggaaaatgggcagttacagacgagg 351
||||||| |||| |||||| |||| |||||||||||||||||||||| |||||
Sbjct: 660 taacctcttgcatagaccactgagaactggaaaatgggcagttacaggcgagg 608
>gb|CW486926.1|CW486926 fsbb001f252h17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252h17, DNA
sequence
Length = 660
Score = 172 bits (87), Expect = 2e-041
Identities = 99/103 (96%)
Strand = Plus / Minus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 617 aggagtggcctgaggatatctacccaccatatgcaaatggaccaggctatgtgatttccg 558
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 557 gtgacatagcaaaattcatcgtgtcacagcatgccaatcagag 515
Score = 75.8 bits (38), Expect = 4e-012
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 459 ctgtttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaattcaacanat 518
|||||| |||||||||||||||| ||||| |||||||| ||||| |||||| ||||| |
Sbjct: 426 ctgtttaagatggaagatgtaagtatgggtctatgggttgagaaattcaatgcaacaaag 367
Query: 519 nntgtnnnatattcncacagctggaa 544
||| |||||| |||||||||||
Sbjct: 366 cctgtccaatattcccacagctggaa 341
>gb|BG049824.1|BG049824 FM1_66_C11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 618
Score = 165 bits (83), Expect = 6e-039
Identities = 128/147 (87%)
Strand = Plus / Plus
Query: 398 tgtgatttctggtgacatagcaaaattcatcgtgtcacagcgtgccaatcagagnntnng 457
||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct: 1 tgtgatttccggtgacatagcaaaattcatcgtgtcacagcatgccaatcagagtttaag 60
Query: 458 actgtttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaattcaacana 517
||||||| |||||||||||||||| ||||| |||||||| |||||||||||| ||||| |
Sbjct: 61 actgtttaagatggaagatgtaagtatgggtctatgggttgagaagttcaatgcaacaaa 120
Query: 518 tnntgtnnnatattcncacagctggaa 544
||| |||||| |||||||||||
Sbjct: 121 gcctgtccaatattcccacagctggaa 147
>gb|CW044336.1|CW044336 104_280_10508891_114_30268 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508891, DNA
sequence
Length = 554
Score = 79.8 bits (40), Expect = 3e-013
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 408 ggtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 554 ggtgacatagcaaaattcatcgtgtcacagcatgccaatcagag 511
Score = 75.8 bits (38), Expect = 4e-012
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 459 ctgtttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaattcaacanat 518
|||||| |||||||||||||||| ||||| |||||||| ||||| |||||| ||||| |
Sbjct: 423 ctgtttaagatggaagatgtaagtatgggtctatgggttgagaaattcaatgcaacaaag 364
Query: 519 nntgtnnnatattcncacagctggaa 544
||| |||||| |||||||||||
Sbjct: 363 cctgtccaatattcccacagctggaa 338
>gb|CW173783.1|CW173783 104_585_11157034_116_36552_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157034, DNA
sequence
Length = 642
Score = 75.8 bits (38), Expect = 4e-012
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 459 ctgtttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaattcaacanat 518
|||||| |||||||||||||||| ||||| |||||||| ||||| |||||| ||||| |
Sbjct: 541 ctgtttaagatggaagatgtaagtatgggtctatgggttgagaaattcaatgcaacaaag 482
Query: 519 nntgtnnnatattcncacagctggaa 544
||| |||||| |||||||||||
Sbjct: 481 cctgtccaatattcccacagctggaa 456
>gb|CN127712.1|CN127712 RHOH1_24_D05.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_D05_A002 5', mRNA sequence
Length = 844
Score = 73.8 bits (37), Expect = 2e-011
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 96 tttggagacattgtcattttgccatttatagaccgctatgagctggttgttcttaagaca 155
||||||||||| |||||| |||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 2 tttggagacatagtcattctgccatttatggaccggtatgagctggtggttctgaagaca 61
Query: 156 attgc 160
||||
Sbjct: 62 gttgc 66
>gb|CW135635.1|CW135635 104_520_11117953_116_34836_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117953, DNA
sequence
Length = 678
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 102 gacattgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgct 161
|||||||| ||| ||||||| || || ||||||| ||||||||||||||||||||||
Sbjct: 214 gacattgttattgtgccattcatggatagctatgatttggttgttcttaagacaattgcc 155
Query: 162 atctgtgagtatggggt 178
|| || |||||||||||
Sbjct: 154 atatgcgagtatggggt 138
>gb|CW209770.1|CW209770 104_640_11189431_116_37430_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189431, DNA
sequence
Length = 666
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 102 gacattgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgct 161
|||||||| ||| ||||||| || || ||||||| ||||||||||||||||||||||
Sbjct: 554 gacattgttattgtgccattcatggatagctatgatttggttgttcttaagacaattgcc 495
Query: 162 atctgtgagtatggggt 178
|| || |||||||||||
Sbjct: 494 atatgcgagtatggggt 478
>gb|CW241144.1|CW241144 104_700_11218605_148_37542_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218605, DNA
sequence
Length = 718
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||| ||||||||||||||||||||||||||
Sbjct: 60 acataatgaaatgtgacgatgatacatttgt 30
>gb|CD222290.1|CD222290 CCC1_21_D09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_D09_A007 3', mRNA sequence
Length = 620
Score = 54.0 bits (27), Expect = 1e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 459 ctgtttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
|||||| ||||||| ||||| ||||||||| | ||||| |||||||||||
Sbjct: 24 ctgtttaagatggaggatgtgagcatgggcatgtgggtggagaagttcaa 73
>gb|CF072395.1|CF072395 FE1_2_F08.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_2_F08_A002 5', mRNA sequence
Length = 658
Score = 48.1 bits (24), Expect = 9e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaat 509
||||||||||||| || |||||| | ||||| ||||||||||||
Sbjct: 571 agatggaagatgttagtatgggcatgtgggttgagaagttcaat 528
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacg 21
|||||||||||||||||||||
Sbjct: 119 gcggccgcccgggcaggtacg 99
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 204 gcggccgcccgggcaggtac 223
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 211 gcggccgcccgggcaggtac 192
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 225 gcggccgcccgggcaggtac 244
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 2 gcggccgcccgggcaggtac 21
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 65
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 21 gcggccgcccgggcaggtac 2
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,305
Number of Sequences: 832831
Number of extensions: 113305
Number of successful extensions: 29179
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29119
Number of HSP's gapped (non-prelim): 57
length of query: 574
length of database: 491,359,669
effective HSP length: 19
effective length of query: 555
effective length of database: 475,535,880
effective search space: 263922413400
effective search space used: 263922413400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)