BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923171.2.1
(570 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE356193.1|BE356193 DG1_123_D11.b1_A002 Dark Grown 1 (DG... 315 2e-084
gb|BE356241.1|BE356241 DG1_123_D11.g1_A002 Dark Grown 1 (DG... 315 2e-084
gb|BE592839.1|BE592839 WS1_91_A12.b1_A002 Water-stressed 1 ... 315 2e-084
gb|CF756574.1|CF756574 DSAF1_6_H03.b1_A011 Drought-stressed... 307 6e-082
gb|CF756649.1|CF756649 DSAF1_6_H03.g1_A011 Drought-stressed... 307 6e-082
gb|CW317120.1|CW317120 104_808_11473246_116_35854_083 Sorgh... 274 8e-072
gb|CW425246.1|CW425246 fsbb001f136a22k0 Sorghum methylation... 274 8e-072
gb|CW497617.1|CW497617 fsbb001f290h08f0 Sorghum methylation... 274 8e-072
gb|BG933169.1|BG933169 WS1_91_A12.g1_A002 Water-stressed 1 ... 254 8e-066
gb|BG933261.1|BG933261 WS1_92_C04.g1_A002 Water-stressed 1 ... 254 8e-066
gb|CF770856.1|CF770856 DSBF1_10_F03.g1_A010 Drought-stresse... 246 2e-063
gb|CF758114.1|CF758114 DSAF1_27_E06.g1_A011 Drought-stresse... 222 3e-056
gb|BE592936.1|BE592936 WS1_92_C04.b1_A002 Water-stressed 1 ... 139 3e-031
gb|CF757882.1|CF757882 DSAF1_24_A03.g1_A011 Drought-stresse... 115 5e-024
gb|CL167629.1|CL167629 104_364_10810212_114_31802_276 Sorgh... 96 4e-018
gb|CL167630.1|CL167630 104_364_10810212_116_31803_276 Sorgh... 96 4e-018
gb|CW315553.1|CW315553 104_806_11472424_148_35830_054 Sorgh... 96 4e-018
gb|AW747265.1|AW747265 WS1_67_D03.b1_A002 Water-stressed 1 ... 96 4e-018
gb|AW747343.1|AW747343 WS1_67_D03.g1_A002 Water-stressed 1 ... 96 4e-018
gb|BZ423594.1|BZ423594 id51b05.g1 WGS-SbicolorF (DH5a methy... 72 6e-011
gb|CW425245.1|CW425245 fsbb001f136a22f0 Sorghum methylation... 72 6e-011
gb|CW414801.1|CW414801 fsbb001f114k04f0 Sorghum methylation... 66 4e-009
gb|BZ422221.1|BZ422221 id51b05.b1 WGS-SbicolorF (DH5a methy... 64 1e-008
gb|CW132367.1|CW132367 104_515_11116173_148_34794_085 Sorgh... 48 9e-004
gb|CW315552.1|CW315552 104_806_11472424_116_35826_054 Sorgh... 48 9e-004
gb|BE360722.1|BE360722 DG1_66_F05.g2_A002 Dark Grown 1 (DG1... 42 0.055
gb|CW027588.1|CW027588 104_254_10498603_114_30395 Sorghum m... 40 0.22
gb|CW098383.1|CW098383 104_464_11002975_148_34366_018 Sorgh... 40 0.22
gb|CW249502.1|CW249502 104_711_11222883_148_35045_010 Sorgh... 40 0.22
gb|CW302498.1|CW302498 104_786_11464751_148_35668_086 Sorgh... 40 0.22
>gb|BE356193.1|BE356193 DG1_123_D11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 315 bits (159), Expect = 2e-084
Identities = 295/335 (88%), Gaps = 24/335 (7%)
Strand = Plus / Plus
Query: 74 agcttccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaagcaggag 133
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 235 agcttccatggagagagttgcatcaagct---gtgtcagcctcctagcacaaag---gag 288
Query: 134 ggcctacactgtggccgcggccatggctaagaagggagccgccgcacggagggtcg---a 190
||||||| ||||||||||||||||||| |||||||| ||| |||||||| || |
Sbjct: 289 ggcctactctgtggccgcggccatggc---gaagggagtcgc---acggaggggcgccga 342
Query: 191 cgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaaggaagtgaa 247
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 343 cgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaaggaagtgaa 402
Query: 248 cacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctgtcaccgg 304
||| || |||||||| || || ||||||||| |||||||||||||||||||| |||||
Sbjct: 403 caccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccggaccctgtgaccgg 462
Query: 305 ctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctacgcgccaa 361
|||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||
Sbjct: 463 ctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgcgcgccaa 522
Query: 362 gctgctgacggaggctgcggccaactgattaatca 396
|||||| ||||||||||||||||||||||||||||
Sbjct: 523 gctgctcacggaggctgcggccaactgattaatca 557
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaa 466
||||||||||||||| ||||||||
Sbjct: 607 tccacctagcttctcttgctttaa 630
>gb|BE356241.1|BE356241 DG1_123_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 742
Score = 315 bits (159), Expect = 2e-084
Identities = 295/335 (88%), Gaps = 24/335 (7%)
Strand = Plus / Plus
Query: 74 agcttccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaagcaggag 133
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 73 agcttccatggagagagttgcatcaagct---gtgtcagcctcctagcacaaag---gag 126
Query: 134 ggcctacactgtggccgcggccatggctaagaagggagccgccgcacggagggtcg---a 190
||||||| ||||||||||||||||||| |||||||| ||| |||||||| || |
Sbjct: 127 ggcctactctgtggccgcggccatggc---gaagggagtcgc---acggaggggcgccga 180
Query: 191 cgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaaggaagtgaa 247
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 181 cgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaaggaagtgaa 240
Query: 248 cacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctgtcaccgg 304
||| || |||||||| || || ||||||||| |||||||||||||||||||| |||||
Sbjct: 241 caccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccggaccctgtgaccgg 300
Query: 305 ctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctacgcgccaa 361
|||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||
Sbjct: 301 ctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgcgcgccaa 360
Query: 362 gctgctgacggaggctgcggccaactgattaatca 396
|||||| ||||||||||||||||||||||||||||
Sbjct: 361 gctgctcacggaggctgcggccaactgattaatca 395
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 445 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 504
Query: 503 gagc 506
||||
Sbjct: 505 gagc 508
>gb|BE592839.1|BE592839 WS1_91_A12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 538
Score = 315 bits (159), Expect = 2e-084
Identities = 295/335 (88%), Gaps = 24/335 (7%)
Strand = Plus / Plus
Query: 74 agcttccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaagcaggag 133
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 120 agcttccatggagagagttgcatcaagct---gtgtcagcctcctagcacaaag---gag 173
Query: 134 ggcctacactgtggccgcggccatggctaagaagggagccgccgcacggagggtcg---a 190
||||||| ||||||||||||||||||| |||||||| ||| |||||||| || |
Sbjct: 174 ggcctactctgtggccgcggccatggc---gaagggagtcgc---acggaggggcgccga 227
Query: 191 cgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaaggaagtgaa 247
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 228 cgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaaggaagtgaa 287
Query: 248 cacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctgtcaccgg 304
||| || |||||||| || || ||||||||| |||||||||||||||||||| |||||
Sbjct: 288 caccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccggaccctgtgaccgg 347
Query: 305 ctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctacgcgccaa 361
|||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||
Sbjct: 348 ctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgcgcgccaa 407
Query: 362 gctgctgacggaggctgcggccaactgattaatca 396
|||||| ||||||||||||||||||||||||||||
Sbjct: 408 gctgctcacggaggctgcggccaactgattaatca 442
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatc 484
||||||||||||||| |||||||| || ||||||||||||||
Sbjct: 492 tccacctagcttctcttgctttaagatccgcgctcgttgatc 533
>gb|CF756574.1|CF756574 DSAF1_6_H03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_H03_A011 5', mRNA sequence
Length = 654
Score = 307 bits (155), Expect = 6e-082
Identities = 294/335 (87%), Gaps = 24/335 (7%)
Strand = Plus / Plus
Query: 74 agcttccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaagcaggag 133
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 26 agcttccatggagagagttgcatcaagct---gtgtcagcctcctagcacaaag---gag 79
Query: 134 ggcctacactgtggccgcggccatggctaagaagggagccgccgcacggagggtcg---a 190
||||||| ||||||||||||||||||| |||||||| ||| |||||||| || |
Sbjct: 80 ggcctactctgtggccgcggccatggc---gaagggagtcgc---acggaggggcgccga 133
Query: 191 cgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaaggaagtgaa 247
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 134 cgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaaggaagtgaa 193
Query: 248 cacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctgtcaccgg 304
||| || |||||||| || || ||||||||| ||||||||||| |||||||| |||||
Sbjct: 194 caccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccagaccctgtgaccgg 253
Query: 305 ctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctacgcgccaa 361
|||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||
Sbjct: 254 ctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgcgcgccaa 313
Query: 362 gctgctgacggaggctgcggccaactgattaatca 396
|||||| ||||||||||||||||||||||||||||
Sbjct: 314 gctgctcacggaggctgcggccaactgattaatca 348
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 398 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 457
Query: 503 gagc 506
||||
Sbjct: 458 gagc 461
>gb|CF756649.1|CF756649 DSAF1_6_H03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_H03_A011 3', mRNA sequence
Length = 654
Score = 307 bits (155), Expect = 6e-082
Identities = 294/335 (87%), Gaps = 24/335 (7%)
Strand = Plus / Plus
Query: 74 agcttccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaagcaggag 133
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 3 agcttccatggagagagttgcatcaagct---gtgtcagcctcctagcacaaag---gag 56
Query: 134 ggcctacactgtggccgcggccatggctaagaagggagccgccgcacggagggtcg---a 190
||||||| ||||||||||||||||||| |||||||| ||| |||||||| || |
Sbjct: 57 ggcctactctgtggccgcggccatggc---gaagggagtcgc---acggaggggcgccga 110
Query: 191 cgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaaggaagtgaa 247
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 111 cgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaaggaagtgaa 170
Query: 248 cacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctgtcaccgg 304
||| || |||||||| || || ||||||||| ||||||||||| |||||||| |||||
Sbjct: 171 caccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccagaccctgtgaccgg 230
Query: 305 ctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctacgcgccaa 361
|||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||
Sbjct: 231 ctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgcgcgccaa 290
Query: 362 gctgctgacggaggctgcggccaactgattaatca 396
|||||| ||||||||||||||||||||||||||||
Sbjct: 291 gctgctcacggaggctgcggccaactgattaatca 325
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 375 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 434
Query: 503 gagc 506
||||
Sbjct: 435 gagc 438
>gb|CW317120.1|CW317120 104_808_11473246_116_35854_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473246, DNA
sequence
Length = 672
Score = 274 bits (138), Expect = 8e-072
Identities = 249/282 (88%), Gaps = 18/282 (6%)
Strand = Plus / Plus
Query: 127 gcaggagggcctacactgtggccgcggccatggctaagaagggagccgccgcacggaggg 186
|||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 248 gcaggagggcctactctgtggccgcggccatggc---gaagggagtcgc---acggaggg 301
Query: 187 tcg---acgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaagg 240
|| ||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 302 gcgccgacgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaagg 361
Query: 241 aagtgaacacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctg 297
|||||||||| || |||||||| || || ||||||||| |||||||||||||||||||
Sbjct: 362 aagtgaacaccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccggaccctg 421
Query: 298 tcaccggctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctac 354
| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |
Sbjct: 422 tgaccggctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgc 481
Query: 355 gcgccaagctgctgacggaggctgcggccaactgattaatca 396
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 482 gcgccaagctgctcacggaggctgcggccaactgattaatca 523
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 573 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 632
Query: 503 gagc 506
||||
Sbjct: 633 gagc 636
Score = 71.9 bits (36), Expect = 6e-011
Identities = 50/54 (92%), Gaps = 3/54 (5%)
Strand = Plus / Plus
Query: 74 agcttccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaag 127
||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 87 agcttccatggagagagttgcatcaag---ctgtgtcagcctcctagcacaaag 137
>gb|CW425246.1|CW425246 fsbb001f136a22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f136a22, DNA
sequence
Length = 643
Score = 274 bits (138), Expect = 8e-072
Identities = 249/282 (88%), Gaps = 18/282 (6%)
Strand = Plus / Minus
Query: 127 gcaggagggcctacactgtggccgcggccatggctaagaagggagccgccgcacggaggg 186
|||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 635 gcaggagggcctactctgtggccgcggccatggc---gaagggagtcgc---acggaggg 582
Query: 187 tcg---acgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaagg 240
|| ||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 581 gcgccgacgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaagg 522
Query: 241 aagtgaacacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctg 297
|||||||||| || |||||||| || || ||||||||| |||||||||||||||||||
Sbjct: 521 aagtgaacaccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccggaccctg 462
Query: 298 tcaccggctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctac 354
| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |
Sbjct: 461 tgaccggctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgc 402
Query: 355 gcgccaagctgctgacggaggctgcggccaactgattaatca 396
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 401 gcgccaagctgctcacggaggctgcggccaactgattaatca 360
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 310 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 251
Query: 503 gagc 506
||||
Sbjct: 250 gagc 247
>gb|CW497617.1|CW497617 fsbb001f290h08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f290h08, DNA
sequence
Length = 581
Score = 274 bits (138), Expect = 8e-072
Identities = 249/282 (88%), Gaps = 18/282 (6%)
Strand = Plus / Minus
Query: 127 gcaggagggcctacactgtggccgcggccatggctaagaagggagccgccgcacggaggg 186
|||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 463 gcaggagggcctactctgtggccgcggccatggc---gaagggagtcgc---acggaggg 410
Query: 187 tcg---acgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaagg 240
|| ||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 409 gcgccgacgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaagg 350
Query: 241 aagtgaacacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctg 297
|||||||||| || |||||||| || || ||||||||| |||||||||||||||||||
Sbjct: 349 aagtgaacaccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccggaccctg 290
Query: 298 tcaccggctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctac 354
| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |
Sbjct: 289 tgaccggctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgc 230
Query: 355 gcgccaagctgctgacggaggctgcggccaactgattaatca 396
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 229 gcgccaagctgctcacggaggctgcggccaactgattaatca 188
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 138 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 79
Query: 503 gagc 506
||||
Sbjct: 78 gagc 75
>gb|BG933169.1|BG933169 WS1_91_A12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 609
Score = 254 bits (128), Expect = 8e-066
Identities = 197/218 (90%), Gaps = 9/218 (4%)
Strand = Plus / Plus
Query: 188 cgacgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaaggaagt 244
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 40 cgacgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaaggaagt 99
Query: 245 gaacacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctgtcac 301
|||||| || |||||||| || || ||||||||| |||||||||||||||||||| ||
Sbjct: 100 gaacaccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccggaccctgtgac 159
Query: 302 cggctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctacgcgc 358
||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||
Sbjct: 160 cggctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgcgcgc 219
Query: 359 caagctgctgacggaggctgcggccaactgattaatca 396
||||||||| ||||||||||||||||||||||||||||
Sbjct: 220 caagctgctcacggaggctgcggccaactgattaatca 257
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 307 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 366
Query: 503 gagc 506
||||
Sbjct: 367 gagc 370
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 517 ctgaatgatacatatataata 537
|||||||||||||||||||||
Sbjct: 585 ctgaatgatacatatataata 605
>gb|BG933261.1|BG933261 WS1_92_C04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 254 bits (128), Expect = 8e-066
Identities = 197/218 (90%), Gaps = 9/218 (4%)
Strand = Plus / Plus
Query: 188 cgacgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaaggaagt 244
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 12 cgacgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaaggaagt 71
Query: 245 gaacacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctgtcac 301
|||||| || |||||||| || || ||||||||| |||||||||||||||||||| ||
Sbjct: 72 gaacaccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccggaccctgtgac 131
Query: 302 cggctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctacgcgc 358
||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||
Sbjct: 132 cggctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgcgcgc 191
Query: 359 caagctgctgacggaggctgcggccaactgattaatca 396
||||||||| ||||||||||||||||||||||||||||
Sbjct: 192 caagctgctcacggaggctgcggccaactgattaatca 229
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 279 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 338
Query: 503 gagc 506
||||
Sbjct: 339 gagc 342
>gb|CF770856.1|CF770856 DSBF1_10_F03.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_10_F03_A010 3', mRNA sequence
Length = 595
Score = 246 bits (124), Expect = 2e-063
Identities = 196/218 (89%), Gaps = 9/218 (4%)
Strand = Plus / Plus
Query: 188 cgacgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaaggaagt 244
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 37 cgacgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaaggaagt 96
Query: 245 gaacacggctgccgctgcggcagctgaggagaag---gcgtgggtgccggaccctgtcac 301
|||||| || |||||||| || || ||||||||| ||||||||||| |||||||| ||
Sbjct: 97 gaacaccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccagaccctgtgac 156
Query: 302 cggctactatcgcccagcaggtagcgc---caaggaggttgacgcggcggagctacgcgc 358
||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||
Sbjct: 157 cggctactatcgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgcgcgc 216
Query: 359 caagctgctgacggaggctgcggccaactgattaatca 396
||||||||| ||||||||||||||||||||||||||||
Sbjct: 217 caagctgctcacggaggctgcggccaactgattaatca 254
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 304 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 363
Query: 503 gagc 506
||||
Sbjct: 364 gagc 367
>gb|CF758114.1|CF758114 DSAF1_27_E06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_27_E06_A011 3', mRNA sequence
Length = 555
Score = 222 bits (112), Expect = 3e-056
Identities = 170/188 (90%), Gaps = 6/188 (3%)
Strand = Plus / Plus
Query: 215 gaccaagcgcgtgatgggcaagaaggaagtgaacacggctgccgctgcggcagctgagga 274
|||||||||||||||||||||||||||||||||||| || |||||||| || || |||||
Sbjct: 1 gaccaagcgcgtgatgggcaagaaggaagtgaacaccgcagccgctgctgcggcggagga 60
Query: 275 gaag---gcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgc--- 328
|||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 61 gaagaaggcgtgggtgccagaccctgtgaccggctactatcgcccagcaggtagcgctgc 120
Query: 329 caaggaggttgacgcggcggagctacgcgccaagctgctgacggaggctgcggccaactg 388
||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||||||||
Sbjct: 121 caaggaggtggacgccgcggagttgcgcgccaagctgctcacggaggctgcggccaactg 180
Query: 389 attaatca 396
||||||||
Sbjct: 181 attaatca 188
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 238 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 297
Query: 503 gagc 506
||||
Sbjct: 298 gagc 301
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 517 ctgaatgatacatatataata 537
|||||||||||||||||||||
Sbjct: 519 ctgaatgatacatatataata 539
>gb|BE592936.1|BE592936 WS1_92_C04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 141
Score = 139 bits (70), Expect = 3e-031
Identities = 116/130 (89%), Gaps = 6/130 (4%)
Strand = Plus / Plus
Query: 188 cgacgagaagaaggcggcggccgcgc---tgaccaagcgcgtgatgggcaagaaggaagt 244
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 12 cgacgagaagaaggcggcggcggcggcggtgaccaagcgcgtgatgggcaagaaggaagt 71
Query: 245 gaacacggctgccgctgcggcagctgagg---agaaggcgtgggtgccggaccctgtcac 301
|||||| || |||||||| || || |||| ||||||||||||||||||||||||| ||
Sbjct: 72 gaacaccgcagccgctgctgcggcggaggagaagaaggcgtgggtgccggaccctgtgac 131
Query: 302 cggctactat 311
||||||||||
Sbjct: 132 cggctactat 141
>gb|CF757882.1|CF757882 DSAF1_24_A03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_24_A03_A011 3', mRNA sequence
Length = 461
Score = 115 bits (58), Expect = 5e-024
Identities = 81/88 (92%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 312 cgcccagcaggtagcgc---caaggaggttgacgcggcggagctacgcgccaagctgctg 368
||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 1 cgcccagcaggtagcgctgccaaggaggtggacgccgcggagctgcgcgccaagctgctc 60
Query: 369 acggaggctgcggccaactgattaatca 396
||||||||||||||||||||||||||||
Sbjct: 61 acggaggctgcggccaactgattaatca 88
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| || ||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 138 tccacctagcttctcttgatttaagatccgcgctcgttgatcgcggggctccttggccta 197
Query: 503 gagc 506
||||
Sbjct: 198 gagc 201
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 517 ctgaatgatacatatataata 537
|||||||||||||||||||||
Sbjct: 419 ctgaatgatacatatataata 439
>gb|CL167629.1|CL167629 104_364_10810212_114_31802_276 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810212, DNA
sequence
Length = 754
Score = 95.6 bits (48), Expect = 4e-018
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggttg 339
|||||||||||||||| |||||||||||||| ||||| || ||| || |||||||||| |
Sbjct: 189 cgtgggtgccggaccccgtcaccggctactaccgcccggcgggtggcaccaaggaggtgg 130
Query: 340 acgcggcggagctacgcgccaagctgct 367
|||| |||||||| ||||||| ||||||
Sbjct: 129 acgccgcggagcttcgcgccaggctgct 102
Score = 48.1 bits (24), Expect = 9e-004
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Minus
Query: 78 tccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaag 127
||||||||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 529 tccatggagagagttgcgtcgagct---gcgccagcctcctagcacaaag 483
>gb|CL167630.1|CL167630 104_364_10810212_116_31803_276 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810212, DNA
sequence
Length = 711
Score = 95.6 bits (48), Expect = 4e-018
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggttg 339
|||||||||||||||| |||||||||||||| ||||| || ||| || |||||||||| |
Sbjct: 569 cgtgggtgccggaccccgtcaccggctactaccgcccggcgggtggcaccaaggaggtgg 628
Query: 340 acgcggcggagctacgcgccaagctgct 367
|||| |||||||| ||||||| ||||||
Sbjct: 629 acgccgcggagcttcgcgccaggctgct 656
Score = 48.1 bits (24), Expect = 9e-004
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 78 tccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaag 127
||||||||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 229 tccatggagagagttgcgtcgagct---gcgccagcctcctagcacaaag 275
>gb|CW315553.1|CW315553 104_806_11472424_148_35830_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472424, DNA
sequence
Length = 654
Score = 95.6 bits (48), Expect = 4e-018
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggttg 339
|||||||||||||||| |||||||||||||| ||||| || ||| || |||||||||| |
Sbjct: 352 cgtgggtgccggaccccgtcaccggctactaccgcccggcgggtggcaccaaggaggtgg 293
Query: 340 acgcggcggagctacgcgccaagctgct 367
|||| |||||||| ||||||| ||||||
Sbjct: 292 acgccgcggagcttcgcgccaggctgct 265
>gb|AW747265.1|AW747265 WS1_67_D03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 532
Score = 95.6 bits (48), Expect = 4e-018
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggttg 339
|||||||||||||||| |||||||||||||| ||||| || ||| || |||||||||| |
Sbjct: 193 cgtgggtgccggaccccgtcaccggctactaccgcccggcgggtggcaccaaggaggtgg 252
Query: 340 acgcggcggagctacgcgccaagctgct 367
|||| |||||||| ||||||| ||||||
Sbjct: 253 acgccgcggagcttcgcgccaggctgct 280
Score = 52.0 bits (26), Expect = 6e-005
Identities = 66/78 (84%), Gaps = 6/78 (7%)
Strand = Plus / Plus
Query: 78 tccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaagcaggagggcc 137
||||||||||||||||| || |||| ||| |||||||||||||||| ||||||| |
Sbjct: 9 tccatggagagagttgcgtcgagct---gcgccagcctcctagcacaa---aggaggggc 62
Query: 138 tacactgtggccgcggcc 155
||| | ||||||||||||
Sbjct: 63 tactcggtggccgcggcc 80
>gb|AW747343.1|AW747343 WS1_67_D03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 95.6 bits (48), Expect = 4e-018
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggttg 339
|||||||||||||||| |||||||||||||| ||||| || ||| || |||||||||| |
Sbjct: 193 cgtgggtgccggaccccgtcaccggctactaccgcccggcgggtggcaccaaggaggtgg 252
Query: 340 acgcggcggagctacgcgccaagctgct 367
|||| |||||||| ||||||| ||||||
Sbjct: 253 acgccgcggagcttcgcgccaggctgct 280
Score = 52.0 bits (26), Expect = 6e-005
Identities = 66/78 (84%), Gaps = 6/78 (7%)
Strand = Plus / Plus
Query: 78 tccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaagcaggagggcc 137
||||||||||||||||| || |||| ||| |||||||||||||||| ||||||| |
Sbjct: 9 tccatggagagagttgcgtcgagct---gcgccagcctcctagcacaa---aggaggggc 62
Query: 138 tacactgtggccgcggcc 155
||| | ||||||||||||
Sbjct: 63 tactcggtggccgcggcc 80
>gb|BZ423594.1|BZ423594 id51b05.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51b05 5', DNA sequence
Length = 700
Score = 71.9 bits (36), Expect = 6e-011
Identities = 50/54 (92%), Gaps = 3/54 (5%)
Strand = Plus / Minus
Query: 74 agcttccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaag 127
||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 234 agcttccatggagagagttgcatcaag---ctgtgtcagcctcctagcacaaag 184
Score = 60.0 bits (30), Expect = 2e-007
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 127 gcaggagggcctacactgtggccgcggccatggc 160
|||||||||||||| |||||||||||||||||||
Sbjct: 73 gcaggagggcctactctgtggccgcggccatggc 40
>gb|CW425245.1|CW425245 fsbb001f136a22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f136a22, DNA
sequence
Length = 559
Score = 71.9 bits (36), Expect = 6e-011
Identities = 50/54 (92%), Gaps = 3/54 (5%)
Strand = Plus / Plus
Query: 74 agcttccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaag 127
||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 474 agcttccatggagagagttgcatcaag---ctgtgtcagcctcctagcacaaag 524
>gb|CW414801.1|CW414801 fsbb001f114k04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114k04, DNA
sequence
Length = 573
Score = 65.9 bits (33), Expect = 4e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggttg 339
|||||||||||||||| |||||||||||||| ||||| | ||| || |||||||||| |
Sbjct: 505 cgtgggtgccggaccccgtcaccggctactaccgcccggggggtggcaccaaggaggtgg 564
Query: 340 acgcggcgg 348
|||| ||||
Sbjct: 565 acgccgcgg 573
Score = 48.1 bits (24), Expect = 9e-004
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 78 tccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaag 127
||||||||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 165 tccatggagagagttgcgtcgagct---gcgccagcctcctagcacaaag 211
>gb|BZ422221.1|BZ422221 id51b05.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51b05 5', DNA sequence
Length = 549
Score = 63.9 bits (32), Expect = 1e-008
Identities = 49/54 (90%), Gaps = 3/54 (5%)
Strand = Plus / Plus
Query: 74 agcttccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaag 127
||||||||||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct: 465 agcttccatggagagagctgcatcaag---ctgtgtcagcctcctagcacaaag 515
>gb|CW132367.1|CW132367 104_515_11116173_148_34794_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116173, DNA
sequence
Length = 587
Score = 48.1 bits (24), Expect = 9e-004
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 78 tccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaag 127
||||||||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 387 tccatggagagagttgcgtcgagct---gcgccagcctcctagcacaaag 433
>gb|CW315552.1|CW315552 104_806_11472424_116_35826_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472424, DNA
sequence
Length = 705
Score = 48.1 bits (24), Expect = 9e-004
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 78 tccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaag 127
||||||||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 485 tccatggagagagttgcgtcgagct---gcgccagcctcctagcacaaag 531
>gb|BE360722.1|BE360722 DG1_66_F05.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 451
Score = 42.1 bits (21), Expect = 0.055
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgccc 316
|||||||||| ||||||||||| ||| |||| |||||
Sbjct: 2 cgtgggtgcccgaccctgtcacgggccactaccgccc 38
>gb|CW027588.1|CW027588 104_254_10498603_114_30395 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498603, DNA
sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 195 aagaaggcggcggccgcgctgacc 218
|||||||||||||||||| |||||
Sbjct: 132 aagaaggcggcggccgcggtgacc 109
>gb|CW098383.1|CW098383 104_464_11002975_148_34366_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002975, DNA
sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 528 atatataatatataacagga 547
||||||||||||||||||||
Sbjct: 481 atatataatatataacagga 462
>gb|CW249502.1|CW249502 104_711_11222883_148_35045_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222883, DNA
sequence
Length = 737
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 528 atatataatatataacagga 547
||||||||||||||||||||
Sbjct: 164 atatataatatataacagga 145
>gb|CW302498.1|CW302498 104_786_11464751_148_35668_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464751, DNA
sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 528 atatataatatataacagga 547
||||||||||||||||||||
Sbjct: 539 atatataatatataacagga 520
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,098
Number of Sequences: 832831
Number of extensions: 176098
Number of successful extensions: 54128
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53947
Number of HSP's gapped (non-prelim): 108
length of query: 570
length of database: 491,359,669
effective HSP length: 19
effective length of query: 551
effective length of database: 475,535,880
effective search space: 262020269880
effective search space used: 262020269880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)