BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829259.2.1
(1019 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF489143.1|CF489143 POL1_55_A05.b1_A002 Pollen Sorghum b... 862 0.0
gb|CF485354.1|CF485354 POL1_31_B06.b1_A002 Pollen Sorghum b... 666 0.0
gb|CW493811.1|CW493811 fsbb001f284m09f0 Sorghum methylation... 605 e-171
gb|CW410330.1|CW410330 fsbb001f105a14k0 Sorghum methylation... 591 e-167
gb|BZ627280.1|BZ627280 ih51e02.b1 WGS-SbicolorF (DH5a methy... 406 e-111
gb|CW349437.1|CW349437 fsbb001f010e09f0 Sorghum methylation... 371 e-101
gb|CW463888.1|CW463888 fsbb001f212n03f0 Sorghum methylation... 369 e-100
gb|BZ340143.1|BZ340143 ic37a05.g1 WGS-SbicolorF (JM107 adap... 258 9e-067
gb|CW368842.1|CW368842 fsbb001f042p20f0 Sorghum methylation... 220 2e-055
gb|CW349438.1|CW349438 fsbb001f010e09k0 Sorghum methylation... 178 7e-043
gb|CW493812.1|CW493812 fsbb001f284m09k0 Sorghum methylation... 178 7e-043
gb|BZ344529.1|BZ344529 hp66h10.b1 WGS-SbicolorF (JM107 adap... 168 6e-040
gb|BZ350855.1|BZ350855 ht61e11.g1 WGS-SbicolorF (JM107 adap... 168 6e-040
gb|CW410329.1|CW410329 fsbb001f105a14f0 Sorghum methylation... 168 6e-040
gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum b... 161 2e-037
gb|BZ627281.1|BZ627281 ih51e02.g1 WGS-SbicolorF (DH5a methy... 151 1e-034
gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) So... 119 5e-025
gb|CD221371.1|CD221371 CCC1_54_D12.b1_A007 Callus culture/c... 72 1e-010
gb|BE595856.1|BE595856 PI1_49_B01.g1_A002 Pathogen induced ... 70 4e-010
gb|BE596303.1|BE596303 PI1_49_B01.b1_A002 Pathogen induced ... 70 4e-010
gb|BE601384.1|BE601384 PI1_92_C10.g1_A002 Pathogen induced ... 70 4e-010
gb|BG412608.1|BG412608 OV2_36_E11.g1_A002 Ovary 2 (OV2) Sor... 70 4e-010
gb|BG559745.1|BG559745 RHIZ2_73_B06.g1_A003 Rhizome2 (RHIZ2... 70 4e-010
gb|BG559776.1|BG559776 RHIZ2_73_E06.g1_A003 Rhizome2 (RHIZ2... 70 4e-010
gb|BM329727.1|BM329727 PIC1_42_D10.g1_A002 Pathogen-infecte... 70 4e-010
gb|CB928908.1|CB928908 ABA1_38_A08.b1_A012 Abscisic acid-tr... 70 4e-010
gb|CD203981.1|CD203981 HS1_3_B06.b1_A012 Heat-shocked seedl... 70 4e-010
gb|CD204028.1|CD204028 HS1_3_G02.b1_A012 Heat-shocked seedl... 70 4e-010
gb|CD204161.1|CD204161 HS1_4_G11.b1_A012 Heat-shocked seedl... 70 4e-010
gb|CD207497.1|CD207497 HS1_33_C08.b1_A012 Heat-shocked seed... 70 4e-010
gb|CD207555.1|CD207555 HS1_33_D05.b1_A012 Heat-shocked seed... 70 4e-010
gb|CD207816.1|CD207816 HS1_35_H08.b1_A012 Heat-shocked seed... 70 4e-010
gb|CD207954.1|CD207954 HS1_36_D12.b1_A012 Heat-shocked seed... 70 4e-010
gb|CD208815.1|CD208815 HS1_44_A11.b1_A012 Heat-shocked seed... 70 4e-010
gb|CD209959.1|CD209959 HS1_56_C07.b1_A012 Heat-shocked seed... 70 4e-010
gb|CD212197.1|CD212197 HS1_71_G10.b1_A012 Heat-shocked seed... 70 4e-010
gb|CD220465.1|CD220465 CCC1_67_A10.b1_A007 Callus culture/c... 70 4e-010
gb|CD224789.1|CD224789 CCC1_36_H11.b1_A007 Callus culture/c... 70 4e-010
gb|CD233292.1|CD233292 SS1_13_A05.b1_A012 Salt-stressed see... 70 4e-010
gb|CF427003.1|CF427003 PH1_3_F11.b1_A002 Phosphorous-defici... 70 4e-010
gb|CF760577.1|CF760577 DSAF1_63_A10.b1_A011 Drought-stresse... 70 4e-010
gb|CN147179.1|CN147179 WOUND1_48_D07.b1_A002 Wounded leaves... 70 4e-010
gb|CN149951.1|CN149951 WOUND1_66_A06.b1_A002 Wounded leaves... 70 4e-010
gb|CX615956.1|CX615956 GABR1_25_A05.b1_A002 GA- or brassino... 70 4e-010
gb|CX620652.1|CX620652 GABR1_53_D12.b1_A002 GA- or brassino... 70 4e-010
gb|CD432110.1|CD432110 ETH1_26_G11.b1_A002 Ethylene-treated... 62 1e-007
gb|BE358706.1|BE358706 DG1_31_E02.g1_A002 Dark Grown 1 (DG1... 56 7e-006
gb|BG103652.1|BG103652 RHIZ2_39_B10.g1_A003 Rhizome2 (RHIZ2... 56 7e-006
gb|BG103741.1|BG103741 RHIZ2_40_C05.g1_A003 Rhizome2 (RHIZ2... 56 7e-006
gb|CN149638.1|CN149638 WOUND1_64_B06.b1_A002 Wounded leaves... 56 7e-006
gb|CW114055.1|CW114055 104_488_11105786_116_34560_005 Sorgh... 52 1e-004
gb|CD231108.1|CD231108 SS1_8_B03.b1_A012 Salt-stressed seed... 52 1e-004
gb|CW474205.1|CW474205 fsbb001f229o23f0 Sorghum methylation... 46 0.006
gb|CF759649.1|CF759649 DSAF1_48_A01.b1_A011 Drought-stresse... 44 0.025
gb|AW680990.1|AW680990 WS1_9_G07.b1_A002 Water-stressed 1 (... 42 0.099
gb|BG557663.1|BG557663 EM1_54_H11.g1_A002 Embryo 1 (EM1) So... 42 0.099
gb|BM325263.1|BM325263 PIC1_42_D10.b1_A002 Pathogen-infecte... 42 0.099
gb|CD207647.1|CD207647 HS1_34_G09.b1_A012 Heat-shocked seed... 42 0.099
gb|CF772017.1|CF772017 DSBF1_27_H03.g9_A010 Drought-stresse... 42 0.099
gb|CN144800.1|CN144800 WOUND1_25_B06.b2_A002 Wounded leaves... 42 0.099
gb|CX620647.1|CX620647 GABR1_53_D06.b1_A002 GA- or brassino... 42 0.099
>gb|CF489143.1|CF489143 POL1_55_A05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_A05_A002 3', mRNA sequence
Length = 611
Score = 862 bits (435), Expect = 0.0
Identities = 571/613 (93%), Gaps = 15/613 (2%)
Strand = Plus / Minus
Query: 153 atctatatcatgctctattttaggcaacgcaactcaagaaatagaat---tgaattagct 209
||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 609 atctataccatgctctttttctggcaacgcaactcaagaaatagaataattgaattagct 550
Query: 210 ggttgactatagcaagggccctagaacaaatttcatagactatacgcatatggaagaacc 269
| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 549 gcttgactatagcaatgctcctagaacaaatttcataaactatacgcatatggaagatcc 490
Query: 270 actatgggagcttatgct---gaggaacaggataa-catttc----tttcctaggcctat 321
||||| ||||| |||||| |||||||| ||||| |||||| ||||||||||||||
Sbjct: 489 actataggagcatatgctaaggaggaacaagataaacatttcattctttcctaggcctat 430
Query: 322 agaacttctctttgtatgaccgaccgactagatctacatttatcctggttggttggcact 381
||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct: 429 agaacttctctctgtataactgaccgactagatctacatttatcctggttgg----cact 374
Query: 382 acagtctcatgtacatgcgagtccacacggcccaatcggcgttgctcagcgggaactacc 441
|| |||||||||||| | |||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 373 actgtctcatgtacaagtgagtccacacggaccaattggcgttgctcagcatgaactacc 314
Query: 442 attcagcttcggagactcagatgccgcgtatccataagggctcttgctagcccagttcca 501
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 attcagcttgggagactcagatgccgcgtatccataagggctcttgctagcccagttcca 254
Query: 502 caggtctccgcacatttctgtgatgccatatttcgctttccagtggagctctctctctgc 561
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caggtctctgcacatttctgtgatgccatatttcgctttccagtggagctctctctctgc 194
Query: 562 ttttgccggcgatgaaaagagaatctcagcatcaccaggacgccgttggcccatgaccaa 621
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 193 ttttgccggcgatgaaaagagaatctcagcatcaccaggacgccgttgacccatgaccaa 134
Query: 622 agggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcc 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcc 74
Query: 682 ttttccggttccaaggttgtatgcttcacatcctatgttagatgagctttcaaaaagctt 741
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ttttccggttccaagggtgtatgcttcacatcctatgttagatgagctttcaaaaagctt 14
Query: 742 ccttaatgcgaaa 754
|||||||||||||
Sbjct: 13 ccttaatgcgaaa 1
>gb|CF485354.1|CF485354 POL1_31_B06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_B06_A002 3', mRNA sequence
Length = 568
Score = 666 bits (336), Expect = 0.0
Identities = 503/554 (90%), Gaps = 16/554 (2%)
Strand = Plus / Minus
Query: 28 ggtctcactaaccaatattacatatttatttcaaaagaaatactaataatacagaaattg 87
|||||||||||| ||||||||| |||| ||| |||||||||||||||| |||||||| ||
Sbjct: 550 ggtctcactaactaatattacagatttgtttgaaaagaaatactaatattacagaaactg 491
Query: 88 tctcaaagaaacaatacaattacaaaag-aaaatttgtatgaactgcaactttttgtgat 146
|| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 490 tcgcaaagaaacaatacaattacaaaagaaaaatttctatgaagtgcaactttttgtgat 431
Query: 147 gctgatatctatatcatgctctattttaggcaacgcaactcaagaaatag---aattgaa 203
| || |||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 430 gatggtatctataccatgctctatttctggcaacgcaactcaagaaatagaataattgaa 371
Query: 204 ttagctggttgactatagcaagggccctagaacaaatttcatagactatacgcatatgga 263
||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct: 370 ttagctgcttgactatagcaatgctcctagaacaaatttcataaactatacgcatatgga 311
Query: 264 agaaccactatgggagcttatgct---gaggaacaggat-aaca----tttctttcctag 315
||| ||||||| ||||| |||||| |||||||| ||| |||| ||||||||||||
Sbjct: 310 agatccactataggagcatatgctaaggaggaacaagataaacatttctttctttcctag 251
Query: 316 gcctatagaacttctctttgtatgaccgaccgactagatctacatttatcctggttggtt 375
||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||
Sbjct: 250 gcctatagaacttctctctgtataactgaccgactagatctacatttatcc----tggtt 195
Query: 376 ggcactacagtctcatgtacatgcgagtccacacggcccaatcggcgttgctcagcggga 435
|||||||| |||||||||||| | |||||||||||| ||||| ||||||||||||| ||
Sbjct: 194 ggcactactgtctcatgtacaagtgagtccacacggaccaattggcgttgctcagcatga 135
Query: 436 actaccattcagcttcggagactcagatgccgcgtatccataagggctcttgctagccca 495
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 actaccattcagcttgggagactcagatgccgcgtatccataagggctcttgctagccca 75
Query: 496 gttccacaggtctccgcacatttctgtgatgccatatttcgctttccagtggagctctct 555
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gttccacaggtctctgcacatttctgtgatgccatatttcgctttccagtggagctctct 15
Query: 556 ctctgcttttgccg 569
||||||||||||||
Sbjct: 14 ctctgcttttgccg 1
>gb|CW493811.1|CW493811 fsbb001f284m09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284m09, DNA
sequence
Length = 721
Score = 605 bits (305), Expect = e-171
Identities = 472/523 (90%), Gaps = 16/523 (3%)
Strand = Plus / Plus
Query: 28 ggtctcactaaccaatattacatatttatttcaaaagaaatactaataatacagaaattg 87
|||||||||||| ||||||||| |||| ||| |||||||||||||||| |||||||| ||
Sbjct: 111 ggtctcactaactaatattacagatttgtttgaaaagaaatactaatattacagaaactg 170
Query: 88 tctcaaagaaacaatacaattacaaaag-aaaatttgtatgaactgcaactttttgtgat 146
|| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 171 tcgcaaagaaacaatacaattacaaaagaaaaatttctatgaagtgcaactttttgtgat 230
Query: 147 gctgatatctatatcatgctctattttaggcaacgcaactcaagaaatag---aattgaa 203
| || |||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 231 gatggtatctataccatgctctatttctggcaacgcaactcaagaaatagaataattgaa 290
Query: 204 ttagctggttgactatagcaagggccctagaacaaatttcatagactatacgcatatgga 263
||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct: 291 ttagctgcttgactatagcaatgctcctagaacaaatttcataaactatacgcatatgga 350
Query: 264 agaaccactatgggagcttatgct---gaggaacaggat-aaca----tttctttcctag 315
||| ||||||| ||||| |||||| |||||||| ||| |||| ||||||||||||
Sbjct: 351 agatccactataggagcatatgctaaggaggaacaagataaacatttctttctttcctag 410
Query: 316 gcctatagaacttctctttgtatgaccgaccgactagatctacatttatcctggttggtt 375
||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||
Sbjct: 411 gcctatagaacttctctctgtataactgaccgactagatctacatttatcc----tggtt 466
Query: 376 ggcactacagtctcatgtacatgcgagtccacacggcccaatcggcgttgctcagcggga 435
|||||||| |||||||||||| | |||||||||||| ||||| ||||||||||||| ||
Sbjct: 467 ggcactactgtctcatgtacaagtgagtccacacggaccaattggcgttgctcagcatga 526
Query: 436 actaccattcagcttcggagactcagatgccgcgtatccataagggctcttgctagccca 495
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 actaccattcagcttgggagactcagatgccgcgtatccataagggctcttgctagccca 586
Query: 496 gttccacaggtctccgcacatttctgtgatgccatatttcgct 538
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 587 gttccacaggtctctgcacatttctgtgatgccatatttcgct 629
>gb|CW410330.1|CW410330 fsbb001f105a14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105a14, DNA
sequence
Length = 655
Score = 591 bits (298), Expect = e-167
Identities = 472/524 (90%), Gaps = 17/524 (3%)
Strand = Plus / Plus
Query: 28 ggtctcactaaccaatattacatatttatttcaaaagaaatactaataatacagaaattg 87
|||||||||||| ||||||||| |||| ||| |||||||||||||||| |||||||| ||
Sbjct: 76 ggtctcactaactaatattacagatttgtttgaaaagaaatactaatattacagaaactg 135
Query: 88 tctcaaagaaacaatacaattacaaaag-aaaatttgtatgaactgcaactttttgtgat 146
|| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 136 tcgcaaagaaacaatacaattacaaaagaaaaatttctatgaagtgcaactttttgtgat 195
Query: 147 gctgatatctatatcatgctctattttaggcaacgcaactcaagaaatag---aattgaa 203
| || |||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 196 gatggtatctataccatgctctatttctggcaacgcaactcaagaaatagaataattgaa 255
Query: 204 ttagctggttgactatagcaagggccctagaacaaatttcatagactatacgcatatgga 263
||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct: 256 ttagctgcttgactatagcaatgctcctagaacaaatttcataaactatacgcatatgga 315
Query: 264 agaaccactatgggagcttatgct---gaggaacaggat-aaca----tttctttcctag 315
||| ||||||| ||||| |||||| |||||||| ||| |||| ||||||||||||
Sbjct: 316 agatccactataggagcatatgctaaggaggaacaagataaacatttctttctttcctag 375
Query: 316 gcctatagaacttctctttgtatgaccgaccgactagatctacatttatcctggttggtt 375
||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||
Sbjct: 376 gcctatagaacttctctctgtataactgaccgactagatctacatttatcc----tggtt 431
Query: 376 ggcactacagtctcatgtacatgcgagtccacacggcccaatcggcgttgctcagcggga 435
|||||||| |||||||||||| | |||||||||||| ||||| ||||||||||||| ||
Sbjct: 432 ggcactactgtctcatgtacaagtgagtccacacggaccaattggcgttgctcagcatga 491
Query: 436 actaccattcagcttcggagactcagatgccgcgtatccataagggctcttgctagccca 495
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 actaccattcagcttgggagactcagatgccgcgtatccataagggctcttgctagccca 551
Query: 496 gttccacaggtctccgcacatttctgt-gatgccatatttcgct 538
|||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 552 gttccacaggtctctgcacatttctgtggatgccatatttcgct 595
>gb|BZ627280.1|BZ627280 ih51e02.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih51e02 5', DNA sequence
Length = 552
Score = 406 bits (205), Expect = e-111
Identities = 360/407 (88%), Gaps = 16/407 (3%)
Strand = Plus / Plus
Query: 28 ggtctcactaaccaatattacatatttatttcaaaagaaatactaataatacagaaattg 87
|||||||||||| ||||||||| |||| ||| |||||||||||||||| |||||||| ||
Sbjct: 150 ggtctcactaactaatattacagatttgtttgaaaagaaatactaatattacagaaactg 209
Query: 88 tctcaaagaaacaatacaattacaaaag-aaaatttgtatgaactgcaactttttgtgat 146
|| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 210 tcgcaaagaaacaatacaattacaaaagaaaaatttctatgaagtgcaactttttgtgat 269
Query: 147 gctgatatctatatcatgctctattttaggcaacgcaactcaagaaatag---aattgaa 203
| || |||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 270 gatggtatctataccatgctctatttctggcaacgcaactcaagaaatagaataattgaa 329
Query: 204 ttagctggttgactatagcaagggccctagaacaaatttcatagactatacgcatatgga 263
||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct: 330 ttagctgcttgactatagcaatgctcctagaacaaatttcataaactatacgcatatgga 389
Query: 264 agaaccactatgggagcttatgct---gaggaacaggat-aaca----tttctttcctag 315
||| ||||||| ||||| |||||| |||||||| ||| |||| ||||||||||||
Sbjct: 390 agatccactataggagcatatgctaaggaggaacaagataaacatttctttctttcctag 449
Query: 316 gcctatagaacttctctttgtatgaccgaccgactagatctacatttatcctggttggtt 375
||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||
Sbjct: 450 gcctatagaacttctctctgtataactgaccgactagatctacatttatcc----tggtt 505
Query: 376 ggcactacagtctcatgtacatgcgagtccacacggcccaatcggcg 422
|||||||| |||||||||||| | |||||||||||| ||||| ||||
Sbjct: 506 ggcactactgtctcatgtacaagtgagtccacacggaccaattggcg 552
>gb|CW349437.1|CW349437 fsbb001f010e09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010e09, DNA
sequence
Length = 712
Score = 371 bits (187), Expect = e-101
Identities = 314/352 (89%), Gaps = 12/352 (3%)
Strand = Plus / Plus
Query: 28 ggtctcactaaccaatattacatatttatttcaaaagaaatactaataatacagaaattg 87
|||||||||||| ||||||||| |||| ||| |||||||||||||||| |||||||| ||
Sbjct: 361 ggtctcactaactaatattacagatttgtttgaaaagaaatactaatattacagaaactg 420
Query: 88 tctcaaagaaacaatacaattacaaaag-aaaatttgtatgaactgcaactttttgtgat 146
|| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 421 tcgcaaagaaacaatacaattacaaaagaaaaatttctatgaagtgcaactttttgtgat 480
Query: 147 gctgatatctatatcatgctctattttaggcaacgcaactcaagaaatag---aattgaa 203
| || |||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 481 gatggtatctataccatgctctatttctggcaacgcaactcaagaaatagaataattgaa 540
Query: 204 ttagctggttgactatagcaagggccctagaacaaatttcatagactatacgcatatgga 263
||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct: 541 ttagctgcttgactatagcaatgctcctagaacaaatttcataaactatacgcatatgga 600
Query: 264 agaaccactatgggagcttatgct---gaggaacaggat-aaca----tttctttcctag 315
||| ||||||| ||||| |||||| |||||||| ||| |||| ||||||||||||
Sbjct: 601 agatccactataggagcatatgctaaggaggaacaagataaacatttctttctttcctag 660
Query: 316 gcctatagaacttctctttgtatgaccgaccgactagatctacatttatcct 367
||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 661 gcctatagaacttctctctgtataactgaccgactagatctacatttatcct 712
>gb|CW463888.1|CW463888 fsbb001f212n03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212n03, DNA
sequence
Length = 710
Score = 369 bits (186), Expect = e-100
Identities = 205/210 (97%), Gaps = 1/210 (0%)
Strand = Plus / Plus
Query: 798 acccctgtcccatcctttgttgcgtagttatttccaaatattgttagcgatggcctcctg 857
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 16 acccctgtcccatcctttgttgcatagttatttccaaatattgttagtgatggcctcctg 75
Query: 858 ccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttca 917
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ccaacagcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttca 135
Query: 918 ccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaatgatattc 977
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 136 ccaaggtatccactggggtgagccccaaccggattaaagtacctaagcaaaatgatattc 195
Query: 978 cattcaggatctgaat-gtagatatcacgg 1006
|||||||||||||||| |||||||||||||
Sbjct: 196 cattcaggatctgaatggtagatatcacgg 225
>gb|BZ340143.1|BZ340143 ic37a05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic37a05 5', DNA sequence
Length = 623
Score = 258 bits (130), Expect = 9e-067
Identities = 146/150 (97%), Gaps = 1/150 (0%)
Strand = Plus / Minus
Query: 798 acccctgtcccatcctttgttgcgtagttatttcca-aatattgttagcgatggcctcct 856
||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct: 154 acccctgtcccatcctttgttgcatagttatttccanaatattgttagtgatggcctcct 95
Query: 857 gccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttc 916
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gccaacagcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttc 35
Query: 917 accaaggtatccactggggtgagccccaac 946
||||||||||||||||||||||||||||||
Sbjct: 34 accaaggtatccactggggtgagccccaac 5
>gb|CW368842.1|CW368842 fsbb001f042p20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042p20, DNA
sequence
Length = 517
Score = 220 bits (111), Expect = 2e-055
Identities = 192/217 (88%), Gaps = 4/217 (1%)
Strand = Plus / Minus
Query: 28 ggtctcactaaccaatattacatatttatttcaaaagaaatactaataatacagaaattg 87
|||||||||||| ||||||||| |||| ||| |||||||||||||||| |||||||| ||
Sbjct: 217 ggtctcactaactaatattacagatttgtttgaaaagaaatactaatattacagaaactg 158
Query: 88 tctcaaagaaacaatacaattacaaaag-aaaatttgtatgaactgcaactttttgtgat 146
|| ||||||||||||||||||||||||| ||||||| |||||| |||| ||| | |||||
Sbjct: 157 tcgcaaagaaacaatacaattacaaaagaaaaatttctatgaagtgcaccttctcgtgat 98
Query: 147 gctgatatctatatcatgctctattttaggcaacgcaactcaagaaatag---aattgaa 203
| || |||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 97 gatggtatctataccatgctctatttctggcaacgcaactcaagaaatagaataattgaa 38
Query: 204 ttagctggttgactatagcaagggccctagaacaaat 240
||||||| ||||||||||||| | ||||||||||||
Sbjct: 37 ttagctgcttgactatagcaatgctcctagaacaaat 1
>gb|CW349438.1|CW349438 fsbb001f010e09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010e09, DNA
sequence
Length = 730
Score = 178 bits (90), Expect = 7e-043
Identities = 93/94 (98%)
Strand = Plus / Minus
Query: 539 ttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatcacca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatcacca 567
Query: 599 ggacgccgttggcccatgaccaaagggattttct 632
||||||||||| ||||||||||||||||||||||
Sbjct: 566 ggacgccgttgacccatgaccaaagggattttct 533
Score = 168 bits (85), Expect = 6e-040
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 145
Query: 691 tccaaggttgtatgcttcacatcct 715
|||||||||||||||||||||||||
Sbjct: 144 tccaaggttgtatgcttcacatcct 120
>gb|CW493812.1|CW493812 fsbb001f284m09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284m09, DNA
sequence
Length = 734
Score = 178 bits (90), Expect = 7e-043
Identities = 93/94 (98%)
Strand = Plus / Minus
Query: 539 ttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatcacca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatcacca 500
Query: 599 ggacgccgttggcccatgaccaaagggattttct 632
||||||||||| ||||||||||||||||||||||
Sbjct: 499 ggacgccgttgacccatgaccaaagggattttct 466
Score = 168 bits (85), Expect = 6e-040
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 78
Query: 691 tccaaggttgtatgcttcacatcct 715
|||||||||||||||||||||||||
Sbjct: 77 tccaaggttgtatgcttcacatcct 53
Score = 165 bits (83), Expect = 1e-038
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 452 ggagactcagatgccgcgtatccataagggctcttgctagcccagttccacaggtctccg 511
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 734 ggagactcagatgccgcgtatccataagggctcttgctagcccagttccacaggtctctg 675
Query: 512 cacatttctgtgatgccatatttcgct 538
|||||||||||||||||||||||||||
Sbjct: 674 cacatttctgtgatgccatatttcgct 648
>gb|BZ344529.1|BZ344529 hp66h10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp66h10 5', DNA sequence
Length = 586
Score = 168 bits (85), Expect = 6e-040
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 405
Query: 691 tccaaggttgtatgcttcacatcct 715
|||||||||||||||||||||||||
Sbjct: 406 tccaaggttgtatgcttcacatcct 430
>gb|BZ350855.1|BZ350855 ht61e11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht61e11 5', DNA sequence
Length = 698
Score = 168 bits (85), Expect = 6e-040
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 433
Query: 691 tccaaggttgtatgcttcacatcct 715
|||||||||||||||||||||||||
Sbjct: 434 tccaaggttgtatgcttcacatcct 458
Score = 81.8 bits (41), Expect = 1e-013
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 588 cagcatcaccaggacgccgttggcccatgaccaaagggattttct 632
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cagcatcaccaggacgccgttgacccatgaccaaagggattttct 45
>gb|CW410329.1|CW410329 fsbb001f105a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105a14, DNA
sequence
Length = 672
Score = 168 bits (85), Expect = 6e-040
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 267
Query: 691 tccaaggttgtatgcttcacatcct 715
|||||||||||||||||||||||||
Sbjct: 266 tccaaggttgtatgcttcacatcct 242
>gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_A05_A002 5', mRNA sequence
Length = 639
Score = 161 bits (81), Expect = 2e-037
Identities = 91/93 (97%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 915 tcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaatgata 974
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 639 tcaccaaggtatccactggggtgagccccaaccggattaaagtacctaagcaaaatgata 580
Query: 975 ttccattcaggatctgaat-gtagatatcacgg 1006
||||||||||||||||||| |||||||||||||
Sbjct: 579 ttccattcaggatctgaatggtagatatcacgg 547
>gb|BZ627281.1|BZ627281 ih51e02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih51e02 5', DNA sequence
Length = 728
Score = 151 bits (76), Expect = 1e-034
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 713 cctatgttagatgagctttcaaaaagcttccttaatgcgaaaagatgtccttcagcaagg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctatgttagatgagctttcaaaaagcttccttaatgcgaaaagatgtccttcagcaagg 505
Query: 773 tcaaccacatgagatataatcacgaacc 800
|||||||||||| ||||| |||||||||
Sbjct: 504 tcaaccacatga-atatagtcacgaacc 478
>gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 466
Score = 119 bits (60), Expect = 5e-025
Identities = 112/128 (87%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 880 agggcataaggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgag 939
|||||||||| ||||| ||| |||| | |||||| |||||||| |||||||| || ||||
Sbjct: 458 agggcataagattgttgggaattcctcgtgggtcctcaccaagatatccactaggatgag 399
Query: 940 ccccaactggattaaagtacctaagcaaaatgatattccattcaggatctgaa-tgtaga 998
| ||||||||||| ||||||||||| |||||| | |||||||||||||||||| |||||
Sbjct: 398 caccaactggattgaagtacctaagtaaaatgctcttccattcaggatctgaacggtaga 339
Query: 999 tatcacgg 1006
||||||||
Sbjct: 338 tatcacgg 331
>gb|CD221371.1|CD221371 CCC1_54_D12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_D12_A007 3', mRNA sequence
Length = 665
Score = 71.9 bits (36), Expect = 1e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 473 ccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatat 532
||||||||| ||||||| ||||||||||| |||| | ||||| ||| || ||||||
Sbjct: 147 ccataagggttcttgctggcccagttccattggtcgcgacacatctcttcaataccatat 88
Query: 533 ttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagca 592
|| |||||||||| ||||| ||||||||||| | | | ||||||||||||||| |||
Sbjct: 87 tttgctttccagttaagctccctctctgctttagtagtctctgaaaagagaatctctgca 28
Query: 593 tcaccagg 600
||||||||
Sbjct: 27 tcaccagg 20
>gb|BE595856.1|BE595856 PI1_49_B01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 601
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 188 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 129
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 128 tttcctgtccccaggttgtatacttcacatcctat 94
>gb|BE596303.1|BE596303 PI1_49_B01.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 526
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 188 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 129
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 128 tttcctgtccccaggttgtatacttcacatcctat 94
>gb|BE601384.1|BE601384 PI1_92_C10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 475
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 115 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 56
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 55 tttcctgtccccaggttgtatacttcacatcctat 21
>gb|BG412608.1|BG412608 OV2_36_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 202 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 143
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 142 tttcctgtccccaggttgtatacttcacatcctat 108
Score = 44.1 bits (22), Expect = 0.025
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 764 tcagcaaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgt 817
||||| |||||||| ||||| ||| |||||||| ||||| || |||||||||||
Sbjct: 61 tcagccaggtcaacaacatg-gatgtaatcacgcaccccagttccatcctttgt 9
>gb|BG559745.1|BG559745 RHIZ2_73_B06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 589
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 108 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 49
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 48 tttcctgtccccaggttgtatacttcacatcctat 14
>gb|BG559776.1|BG559776 RHIZ2_73_E06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 597
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 116 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 57
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 56 tttcctgtccccaggttgtatacttcacatcctat 22
>gb|BM329727.1|BM329727 PIC1_42_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 651
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 168 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 109
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 108 tttcctgtccccaggttgtatacttcacatcctat 74
>gb|CB928908.1|CB928908 ABA1_38_A08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_38_A08_A012 3', mRNA sequence
Length = 690
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 211 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 152
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 151 tttcctgtccccaggttgtatacttcacatcctat 117
Score = 44.1 bits (22), Expect = 0.025
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 764 tcagcaaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgt 817
||||| |||||||| ||||| ||| |||||||| ||||| || |||||||||||
Sbjct: 70 tcagccaggtcaacaacatg-gatgtaatcacgcaccccagttccatcctttgt 18
>gb|CD203981.1|CD203981 HS1_3_B06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_B06_A012 3', mRNA sequence
Length = 672
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 192 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 133
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 132 tttcctgtccccaggttgtatacttcacatcctat 98
>gb|CD204028.1|CD204028 HS1_3_G02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_G02_A012 3', mRNA sequence
Length = 532
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 102 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 43
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 42 tttcctgtccccaggttgtatacttcacatcctat 8
>gb|CD204161.1|CD204161 HS1_4_G11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_4_G11_A012 3', mRNA sequence
Length = 569
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 98 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 39
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 38 tttcctgtccccaggttgtatacttcacatcctat 4
>gb|CD207497.1|CD207497 HS1_33_C08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_33_C08_A012 3', mRNA sequence
Length = 627
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 101 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 42
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 41 tttcctgtccccaggttgtatacttcacatcctat 7
>gb|CD207555.1|CD207555 HS1_33_D05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_33_D05_A012 3', mRNA sequence
Length = 653
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 171 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 112
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 111 tttcctgtccccaggttgtatacttcacatcctat 77
>gb|CD207816.1|CD207816 HS1_35_H08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_35_H08_A012 3', mRNA sequence
Length = 613
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 169 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 110
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 109 tttcctgtccccaggttgtatacttcacatcctat 75
>gb|CD207954.1|CD207954 HS1_36_D12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_36_D12_A012 3', mRNA sequence
Length = 687
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 211 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 152
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 151 tttcctgtccccaggttgtatacttcacatcctat 117
Score = 44.1 bits (22), Expect = 0.025
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 764 tcagcaaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgt 817
||||| |||||||| ||||| ||| |||||||| ||||| || |||||||||||
Sbjct: 70 tcagccaggtcaacaacatg-gatgtaatcacgcaccccagttccatcctttgt 18
>gb|CD208815.1|CD208815 HS1_44_A11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_44_A11_A012 3', mRNA sequence
Length = 676
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 192 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 133
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 132 tttcctgtccccaggttgtatacttcacatcctat 98
>gb|CD209959.1|CD209959 HS1_56_C07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_56_C07_A012 3', mRNA sequence
Length = 627
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 126 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 67
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 66 tttcctgtccccaggttgtatacttcacatcctat 32
>gb|CD212197.1|CD212197 HS1_71_G10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_71_G10_A012 3', mRNA sequence
Length = 574
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 102 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 43
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 42 tttcctgtccccaggttgtatacttcacatcctat 8
>gb|CD220465.1|CD220465 CCC1_67_A10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_A10_A007 3', mRNA sequence
Length = 650
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 170 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 111
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 110 tttcctgtccccaggttgtatacttcacatcctat 76
>gb|CD224789.1|CD224789 CCC1_36_H11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_36_H11_A007 3', mRNA sequence
Length = 660
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 169 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 110
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 109 tttcctgtccccaggttgtatacttcacatcctat 75
>gb|CD233292.1|CD233292 SS1_13_A05.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_13_A05_A012 3', mRNA sequence
Length = 652
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 110 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 51
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 50 tttcctgtccccaggttgtatacttcacatcctat 16
>gb|CF427003.1|CF427003 PH1_3_F11.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_3_F11_A002 3', mRNA sequence
Length = 564
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 102 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 43
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 42 tttcctgtccccaggttgtatacttcacatcctat 8
>gb|CF760577.1|CF760577 DSAF1_63_A10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_63_A10_A011 5', mRNA sequence
Length = 458
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 162 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 103
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 102 tttcctgtccccaggttgtatacttcacatcctat 68
>gb|CN147179.1|CN147179 WOUND1_48_D07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_D07_A002 3', mRNA sequence
Length = 743
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 278 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 219
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 218 tttcctgtccccaggttgtatacttcacatcctat 184
Score = 44.1 bits (22), Expect = 0.025
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 764 tcagcaaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgt 817
||||| |||||||| ||||| ||| |||||||| ||||| || |||||||||||
Sbjct: 137 tcagccaggtcaacaacatg-gatgtaatcacgcaccccagttccatcctttgt 85
>gb|CN149951.1|CN149951 WOUND1_66_A06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_66_A06_A002 3', mRNA sequence
Length = 604
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 139 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 80
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 79 tttcctgtccccaggttgtatacttcacatcctat 45
>gb|CX615956.1|CX615956 GABR1_25_A05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_25_A05_A002 3', mRNA sequence
Length = 719
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 241 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 182
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 181 tttcctgtccccaggttgtatacttcacatcctat 147
Score = 44.1 bits (22), Expect = 0.025
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 764 tcagcaaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgt 817
||||| |||||||| ||||| ||| |||||||| ||||| || |||||||||||
Sbjct: 100 tcagccaggtcaacaacatg-gatgtaatcacgcaccccagttccatcctttgt 48
>gb|CX620652.1|CX620652 GABR1_53_D12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_53_D12_A002 3', mRNA sequence
Length = 719
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 210 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 151
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 150 tttcctgtccccaggttgtatacttcacatcctat 116
Score = 40.1 bits (20), Expect = 0.39
Identities = 42/48 (87%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 770 aggtcaaccacatgagatataatcacgaacccctgtcccatcctttgt 817
|||||||| ||||| ||| |||||||| ||||| || |||||||||||
Sbjct: 63 aggtcaacaacatg-gatgtaatcacgcaccccagttccatcctttgt 17
>gb|CD432110.1|CD432110 ETH1_26_G11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_G11_A002 3', mRNA sequence
Length = 674
Score = 61.9 bits (31), Expect = 1e-007
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| |||| ||
Sbjct: 211 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccaatgtcccc 152
Query: 683 tttccggttccaaggttgtatgcttcacatcctat 717
||||| || || ||||||||| |||||||||||||
Sbjct: 151 tttcctgtccccaggttgtatacttcacatcctat 117
Score = 44.1 bits (22), Expect = 0.025
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 764 tcagcaaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgt 817
||||| |||||||| ||||| ||| |||||||| ||||| || |||||||||||
Sbjct: 70 tcagccaggtcaacaacatg-gatgtaatcacgcaccccagttccatcctttgt 18
>gb|BE358706.1|BE358706 DG1_31_E02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 711
Score = 56.0 bits (28), Expect = 7e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 473 ccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatat 532
||||||||| ||||||| ||||||||||| |||| | ||||| ||| || ||||||
Sbjct: 106 ccataagggttcttgctggcccagttccattggtcgcgacacatctcttcaataccatat 47
Query: 533 ttcgctttccagtggagctctctctctgcttt 564
|| |||||||||| ||||| |||||||||||
Sbjct: 46 tttgctttccagttaagctccctctctgcttt 15
>gb|BG103652.1|BG103652 RHIZ2_39_B10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 660
Score = 56.0 bits (28), Expect = 7e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 473 ccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatat 532
||||||||| ||||||| ||||||||||| |||| | ||||| ||| || ||||||
Sbjct: 116 ccataagggttcttgctggcccagttccattggtcgcgacacatctcttcaataccatat 57
Query: 533 ttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctc 588
|| |||||||||| ||||| ||||||||||| | | | |||||||||||||||
Sbjct: 56 tttgctttccagttaagctccctctctgctttagtagtctctgaaaagagaatctc 1
>gb|BG103741.1|BG103741 RHIZ2_40_C05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 577
Score = 56.0 bits (28), Expect = 7e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 473 ccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatat 532
||||||||| ||||||| ||||||||||| |||| | ||||| ||| || ||||||
Sbjct: 116 ccataagggttcttgctggcccagttccattggtcgcgacacatctcttcaataccatat 57
Query: 533 ttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctc 588
|| |||||||||| ||||| ||||||||||| | | | |||||||||||||||
Sbjct: 56 tttgctttccagttaagctccctctctgctttagtagtctctgaaaagagaatctc 1
>gb|CN149638.1|CN149638 WOUND1_64_B06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_64_B06_A002 3', mRNA sequence
Length = 717
Score = 56.0 bits (28), Expect = 7e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||| ||||||| |||||| || || |||||||| ||||| ||
Sbjct: 251 gggattttcttcccagaaaccttctcgaatgcagccaccatttccaacaccgatgtcccc 192
Query: 683 tttccggttccaaggttgtatgcttcacatcc 714
||||| || || |||||| || ||||||||||
Sbjct: 191 tttcctgtccccaggttggatacttcacatcc 160
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 272,962
Number of Sequences: 832831
Number of extensions: 272962
Number of successful extensions: 73015
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72898
Number of HSP's gapped (non-prelim): 83
length of query: 1019
length of database: 491,359,669
effective HSP length: 20
effective length of query: 999
effective length of database: 474,703,049
effective search space: 474228345951
effective search space used: 474228345951
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)