BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203826.2.1
(594 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN136626.1|CN136626 OX1_44_G12.b1_A002 Oxidatively-stres... 515 e-144
gb|CW155769.1|CW155769 104_558_11146316_116_36370_074 Sorgh... 450 e-125
gb|CW354064.1|CW354064 fsbb001f017b11k0 Sorghum methylation... 400 e-110
gb|CW155770.1|CW155770 104_558_11146316_148_36369_074 Sorgh... 163 2e-038
gb|CW217959.1|CW217959 104_651_11195928_148_37066_090 Sorgh... 80 3e-013
gb|CW435340.1|CW435340 fsbb001f151h04k0 Sorghum methylation... 80 3e-013
gb|CW427650.1|CW427650 fsbb001f139m02f0 Sorghum methylation... 58 1e-006
gb|CW104641.1|CW104641 104_473_11012539_116_34444_068 Sorgh... 48 0.001
gb|BZ780043.1|BZ780043 ii36g12.g1 WGS-SbicolorF (DH5a methy... 44 0.014
gb|CW159200.1|CW159200 104_565_11149235_148_36408_044 Sorgh... 40 0.23
>gb|CN136626.1|CN136626 OX1_44_G12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_44_G12_A002 3', mRNA sequence
Length = 795
Score = 515 bits (260), Expect = e-144
Identities = 390/430 (90%), Gaps = 5/430 (1%)
Strand = Plus / Minus
Query: 152 ctacaagaaaacatcaaaatgcacatctaaaatccctgggtagtcctaaatttgttaaat 211
||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 678 ctacaagaaaacatcaaaatgcacatctaaa-tccctggatagtcctaaatg-gttaaat 621
Query: 212 ttacacctcaaaactaccaaagatgcatttgcatcataattcacaacgccaataccacaa 271
|| | |||||||||||||||| || |||||||||| |||||||||| ||||||||||||
Sbjct: 620 ttgcttctcaaaactaccaaagctgtatttgcatcagaattcacaacaccaataccacaa 561
Query: 272 acatcagaaggtgatacaccaaacctctaaatgttccagaagcagcctcaccggcccggc 331
|||||||||||||||||||||||| ||||||||||||| |||||||| | |||||
Sbjct: 560 acatcagaaggtgatacaccaaactgctaaatgttccag---cagcctcatggatccggc 504
Query: 332 tgccaccactcctgggcctggccctagtcaccgccactccgcctgcccggtacgccacac 391
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 cgccaccactcctgggcctggccctagtcaccgccactccacctgcccggtacgccacac 444
Query: 392 ccgcattccatcctgcaggtatggcattgctggctatgagtacccggcctgagctgaacg 451
||| | |||| |||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 443 ccggagtccaccctgcaggtatggcattgctggctatgagtaccctgcctgagctgaatg 384
Query: 452 tcaagcggagggggaacgggccctgaagagcagagccagagtcgagcctccagattgcac 511
||| ||||||| |||||||||| ||||| |||||||| |||||||||||||| || ||||
Sbjct: 383 tcaggcggaggtggaacgggccgtgaagggcagagcccgagtcgagcctccaaatcgcac 324
Query: 512 cccacgaatgctgcatcggcacccattgccctgctgagctctgcatgatgtcgacggctg 571
|||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| |
Sbjct: 323 cccatgaatgctgcataggcacccattgtcctgccgagttctgcatgatgtcgacggccg 264
Query: 572 aaagatcgct 581
||||||||||
Sbjct: 263 aaagatcgct 254
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 92 catgctgataactcaaccacaacaaaaacgtt 123
||||||| |||||| | |||||||||||||||
Sbjct: 739 catgctggtaactcgatcacaacaaaaacgtt 708
>gb|CW155769.1|CW155769 104_558_11146316_116_36370_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146316, DNA
sequence
Length = 719
Score = 450 bits (227), Expect = e-125
Identities = 328/361 (90%), Gaps = 3/361 (0%)
Strand = Plus / Minus
Query: 221 aaaactaccaaagatgcatttgcatcataattcacaacgccaataccacaaacatcagaa 280
||||||||||||| || |||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 719 aaaactaccaaagctgtatttgcatcagaattcacaacaccaataccacaaacatcagaa 660
Query: 281 ggtgatacaccaaacctctaaatgttccagaagcagcctcaccggcccggctgccaccac 340
||||||||||||||| ||||||||||||| |||||||| | ||||| ||||||||
Sbjct: 659 ggtgatacaccaaactgctaaatgttccag---cagcctcatggatccggccgccaccac 603
Query: 341 tcctgggcctggccctagtcaccgccactccgcctgcccggtacgccacacccgcattcc 400
||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct: 602 tcctgggcctggccctagtcaccgccactccacctgcccggtacgccacacccggagtcc 543
Query: 401 atcctgcaggtatggcattgctggctatgagtacccggcctgagctgaacgtcaagcgga 460
| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct: 542 accctgcaggtatggcattgctggctatgagtaccctgcctgagctgaatgtcaggcgga 483
Query: 461 gggggaacgggccctgaagagcagagccagagtcgagcctccagattgcaccccacgaat 520
|| |||||||||| ||||| |||||||| |||||||||||||| || |||||||| ||||
Sbjct: 482 ggtggaacgggccgtgaagggcagagcccgagtcgagcctccaaatcgcaccccatgaat 423
Query: 521 gctgcatcggcacccattgccctgctgagctctgcatgatgtcgacggctgaaagatcgc 580
||||||| ||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 422 gctgcataggcacccattgtcctgccgagttctgcatgatgtcgacggccgaaagatcgc 363
Query: 581 t 581
|
Sbjct: 362 t 362
>gb|CW354064.1|CW354064 fsbb001f017b11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f017b11, DNA
sequence
Length = 477
Score = 400 bits (202), Expect = e-110
Identities = 305/336 (90%), Gaps = 5/336 (1%)
Strand = Plus / Minus
Query: 152 ctacaagaaaacatcaaaatgcacatctaaaatccctgggtagtcctaaatttgttaaat 211
||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 347 ctacaagaaaacatcaaaatgcacatctaaa-tccctggatagtcctaaatg-gttaaat 290
Query: 212 ttacacctcaaaactaccaaagatgcatttgcatcataattcacaacgccaataccacaa 271
|| | |||||||||||||||| || |||||||||| |||||||||| ||||||||||||
Sbjct: 289 ttgcttctcaaaactaccaaagctgtatttgcatcagaattcacaacaccaataccacaa 230
Query: 272 acatcagaaggtgatacaccaaacctctaaatgttccagaagcagcctcaccggcccggc 331
|||||||||||||||||||||||| ||||||||||||| |||||||| | |||||
Sbjct: 229 acatcagaaggtgatacaccaaactgctaaatgttccag---cagcctcatggatccggc 173
Query: 332 tgccaccactcctgggcctggccctagtcaccgccactccgcctgcccggtacgccacac 391
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 172 cgccaccactcctgggcctggccctagtcaccgccactccacctgcccggtacgccacac 113
Query: 392 ccgcattccatcctgcaggtatggcattgctggctatgagtacccggcctgagctgaacg 451
||| | |||| |||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 112 ccggagtccaccctgcaggtatggcattgctggctatgagtaccctgcctgagctgaatg 53
Query: 452 tcaagcggagggggaacgggccctgaagagcagagc 487
||| ||||||| |||||||||| ||||| |||||||
Sbjct: 52 tcaggcggaggtggaacgggccgtgaagggcagagc 17
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 92 catgctgataactcaaccacaacaaaaacgtt 123
||||||| |||||| | |||||||||||||||
Sbjct: 408 catgctggtaactcgatcacaacaaaaacgtt 377
>gb|CW155770.1|CW155770 104_558_11146316_148_36369_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146316, DNA
sequence
Length = 641
Score = 163 bits (82), Expect = 2e-038
Identities = 126/138 (91%), Gaps = 2/138 (1%)
Strand = Plus / Plus
Query: 152 ctacaagaaaacatcaaaatgcacatctaaaatccctgggtagtcctaaatttgttaaat 211
||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 506 ctacaagaaaacatcaaaatgcacatctaaa-tccctggatagtcctaaatg-gttaaat 563
Query: 212 ttacacctcaaaactaccaaagatgcatttgcatcataattcacaacgccaataccacaa 271
|| | |||||||||||||||| || |||||||||| |||||||||| || |||||||||
Sbjct: 564 ttgcttctcaaaactaccaaagctgtatttgcatcagaattcacaacacccataccacaa 623
Query: 272 acatcagaaggtgataca 289
||||||||||||||||||
Sbjct: 624 acatcagaaggtgataca 641
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 92 catgctgataactcaaccacaacaaaaacgtt 123
||||||| |||||| | |||||||||||||||
Sbjct: 445 catgctggtaactcgatcacaacaaaaacgtt 476
>gb|CW217959.1|CW217959 104_651_11195928_148_37066_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195928, DNA
sequence
Length = 715
Score = 79.8 bits (40), Expect = 3e-013
Identities = 166/208 (79%)
Strand = Plus / Plus
Query: 335 caccactcctgggcctggccctagtcaccgccactccgcctgcccggtacgccacacccg 394
|||| |||| |||||||||||| | ||| ||||| ||||||| ||||||||| || || |
Sbjct: 360 caccgctccggggcctggccctcgccacagccacgccgcctgaccggtacgcgacgccgg 419
Query: 395 cattccatcctgcaggtatggcattgctggctatgagtacccggcctgagctgaacgtca 454
| ||||| || ||||||||||| |||| ||| | ||| |||| ||| |||||||| || |
Sbjct: 420 cgttccaccccgcaggtatggcgttgccggcgacgagcaccctgccagagctgaaggtga 479
Query: 455 agcggagggggaacgggccctgaagagcagagccagagtcgagcctccagattgcacccc 514
||||| | ||| |||||||| || | | ||| |||| || | |||| | || ||||
Sbjct: 480 ggcggatgttgaaggggccctggaggacggcgccggagttgatcttccacacggcgcccc 539
Query: 515 acgaatgctgcatcggcacccattgccc 542
|||| ||||||||||||||||| |||||
Sbjct: 540 acgactgctgcatcggcacccactgccc 567
>gb|CW435340.1|CW435340 fsbb001f151h04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151h04, DNA
sequence
Length = 598
Score = 79.8 bits (40), Expect = 3e-013
Identities = 166/208 (79%)
Strand = Plus / Plus
Query: 335 caccactcctgggcctggccctagtcaccgccactccgcctgcccggtacgccacacccg 394
|||| |||| |||||||||||| | ||| ||||| ||||||| ||||||||| || || |
Sbjct: 123 caccgctccggggcctggccctcgccacagccacgccgcctgaccggtacgcgacgccgg 182
Query: 395 cattccatcctgcaggtatggcattgctggctatgagtacccggcctgagctgaacgtca 454
| ||||| || ||||||||||| |||| ||| | ||| |||| ||| |||||||| || |
Sbjct: 183 cgttccaccccgcaggtatggcgttgccggcgacgagcaccctgccagagctgaaggtga 242
Query: 455 agcggagggggaacgggccctgaagagcagagccagagtcgagcctccagattgcacccc 514
||||| | ||| |||||||| || | | ||| |||| || | |||| | || ||||
Sbjct: 243 ggcggatgttgaaggggccctggaggacggcgccggagttgatcttccacacggcgcccc 302
Query: 515 acgaatgctgcatcggcacccattgccc 542
|||| ||||||||||||||||| |||||
Sbjct: 303 acgactgctgcatcggcacccactgccc 330
>gb|CW427650.1|CW427650 fsbb001f139m02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f139m02, DNA
sequence
Length = 510
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 335 caccactcctgggcctggccctagtcaccgccactccgcctgcccggtacgccacacccg 394
|||| |||| |||||||||||| | ||| ||||| ||||||| ||||||||| || || |
Sbjct: 430 caccgctccggggcctggccctcgccacagccacgccgcctgaccggtacgcgacgccgg 489
Query: 395 cattccatcctgcaggtatgg 415
| ||||| || ||||||||||
Sbjct: 490 cgttccaccccgcaggtatgg 510
>gb|CW104641.1|CW104641 104_473_11012539_116_34444_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012539, DNA
sequence
Length = 532
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 335 caccactcctgggcctggccctagtcaccgccactccgcctgcccggtacgc 386
|||| |||| |||||||||||| | ||| ||||| ||||||| |||||||||
Sbjct: 75 caccgctccggggcctggccctcgccacagccacgccgcctgaccggtacgc 24
>gb|BZ780043.1|BZ780043 ii36g12.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii36g12, DNA sequence
Length = 267
Score = 44.1 bits (22), Expect = 0.014
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 513 ccacgaatgctgcatcggcacccattgccc 542
|||||| ||||||||||||||||| |||||
Sbjct: 244 ccacgactgctgcatcggcacccactgccc 215
>gb|CW159200.1|CW159200 104_565_11149235_148_36408_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149235, DNA
sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 238 atttgcatcataattcacaa 257
||||||||||||||||||||
Sbjct: 348 atttgcatcataattcacaa 367
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144,710
Number of Sequences: 832831
Number of extensions: 144710
Number of successful extensions: 39989
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39959
Number of HSP's gapped (non-prelim): 21
length of query: 594
length of database: 491,359,669
effective HSP length: 19
effective length of query: 575
effective length of database: 475,535,880
effective search space: 273433131000
effective search space used: 273433131000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)