BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3197099.2.1
(631 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW054125.1|CW054125 104_294_10516350_114_30182 Sorghum m... 220 1e-055
gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (L... 94 2e-017
gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (L... 94 2e-017
gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sor... 94 2e-017
gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) So... 94 2e-017
gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum b... 84 2e-014
gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 ... 76 4e-012
gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 ... 76 4e-012
gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2... 76 4e-012
gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum ... 76 4e-012
gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced ... 74 2e-011
gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum b... 72 7e-011
gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum b... 72 7e-011
gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorgh... 54 2e-005
gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorgh... 54 2e-005
gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorgh... 54 2e-005
gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation... 54 2e-005
gb|BZ366524.1|BZ366524 ic97f02.g1 WGS-SbicolorF (JM107 adap... 48 0.001
gb|CW030108.1|CW030108 104_258_10500065_114_30403 Sorghum m... 48 0.001
gb|CW089146.1|CW089146 104_434_10948530_115_32585_073 Sorgh... 48 0.001
gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation... 48 0.001
gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorgh... 46 0.004
gb|CW226444.1|CW226444 104_664_11204889_116_37215_039 Sorgh... 46 0.004
gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Me... 46 0.004
gb|CW395471.1|CW395471 fsbb001f083i06f0 Sorghum methylation... 44 0.015
gb|CW395472.1|CW395472 fsbb001f083i06k0 Sorghum methylation... 44 0.015
gb|CW096175.1|CW096175 104_461_11001747_116_34332_004 Sorgh... 42 0.061
gb|CW460238.1|CW460238 fsbb001f207f22f0 Sorghum methylation... 42 0.061
gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle... 42 0.061
gb|BZ347855.1|BZ347855 ho35g11.g1 WGS-SbicolorF (JM107 adap... 40 0.24
gb|CW178747.1|CW178747 104_592_11159733_116_36617_085 Sorgh... 40 0.24
gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorgh... 40 0.24
gb|CW447924.1|CW447924 fsbb001f181e09k0 Sorghum methylation... 40 0.24
gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1... 40 0.24
gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Me... 40 0.24
>gb|CW054125.1|CW054125 104_294_10516350_114_30182 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516350, DNA
sequence
Length = 258
Score = 220 bits (111), Expect = 1e-055
Identities = 141/151 (93%)
Strand = Plus / Minus
Query: 213 gaaagctatctaatccttactaaactctagcaagttagctacagcatgggagtggttaag 272
|||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 151 gaaagctatctaatccctactaaactctacgaagttagctacagcatgtgagtggttaag 92
Query: 273 ggggctccttgtcagcagtagaacatcatccttttcaccttctccttcacagcaggcagg 332
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 91 tggtctccttgtcagcagtagaacatcacccttttcaccttctccttcacagcaggcagg 32
Query: 333 ggcttcaccgagactccgctcgggccattgg 363
|||||||||||||||||| ||| || |||||
Sbjct: 31 ggcttcaccgagactccgttcgtgctattgg 1
Score = 54.0 bits (27), Expect = 2e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 135 aacaacaactattatacagccatttccgagtactttacagaggtcgttaacagat 189
||||| || |||||||||| ||||| ||||||||||| ||||||| ||||||||
Sbjct: 247 aacaagaattattatacaggcatttgtgagtactttactgaggtcggtaacagat 193
>gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 93.7 bits (47), Expect = 2e-017
Identities = 191/239 (79%)
Strand = Plus / Minus
Query: 393 tctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggaggg 452
||||| ||||||||||| ||||| || || ||||||| || || |||||||| || ||
Sbjct: 410 tctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgccgggggc 351
Query: 453 acaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggc 512
|||| | || ||||| ||||||| || || |||||||| |||||||||| || | |
Sbjct: 350 acaattgacacggagcgagtgcacctagcgtacgtgtagcacaggttgtttgtcagagtc 291
Query: 513 tgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggccta 572
|||| || || ||||| || |||||||||||||| ||||||||| | |||||||| |
Sbjct: 290 tgcagctcatcagctgtaaacttgttctcatcccacaggacatggtaatgagcagggcgg 231
Query: 573 ctcgttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || || ||||| ||||| |||||||||||||| ||||| || |||||
Sbjct: 230 cttgttccctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatggca 172
>gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 93.7 bits (47), Expect = 2e-017
Identities = 191/239 (79%)
Strand = Plus / Minus
Query: 393 tctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggaggg 452
||||| ||||||||||| ||||| || || ||||||| || || |||||||| || ||
Sbjct: 410 tctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgccgggggc 351
Query: 453 acaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggc 512
|||| | || ||||| ||||||| || || |||||||| |||||||||| || | |
Sbjct: 350 acaattgacacggagcgagtgcacctagcgtacgtgtagcacaggttgtttgtcagagtc 291
Query: 513 tgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggccta 572
|||| || || ||||| || |||||||||||||| ||||||||| | |||||||| |
Sbjct: 290 tgcagctcatcagctgtaaacttgttctcatcccacaggacatggtaatgagcagggcgg 231
Query: 573 ctcgttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || || ||||| ||||| |||||||||||||| ||||| || |||||
Sbjct: 230 cttgttccctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatggca 172
>gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 93.7 bits (47), Expect = 2e-017
Identities = 191/239 (79%)
Strand = Plus / Minus
Query: 393 tctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggaggg 452
||||| ||||||||||| ||||| || || ||||||| || || |||||||| || ||
Sbjct: 247 tctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgccgggggc 188
Query: 453 acaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggc 512
|||| | || ||||| ||||||| || || |||||||| |||||||||| || | |
Sbjct: 187 acaattgacacggagcgagtgcacctagcgtacgtgtagcacaggttgtttgtcagagtc 128
Query: 513 tgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggccta 572
|||| || || ||||| || |||||||||||||| ||||||||| | |||||||| |
Sbjct: 127 tgcagctcatcagctgtaaacttgttctcatcccacaggacatggtaatgagcagggcgg 68
Query: 573 ctcgttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || || ||||| ||||| |||||||||||||| ||||| || |||||
Sbjct: 67 cttgttccctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatggca 9
>gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 93.7 bits (47), Expect = 2e-017
Identities = 191/239 (79%)
Strand = Plus / Minus
Query: 393 tctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggaggg 452
||||| ||||||||||| ||||| || || ||||||| || || |||||||| || ||
Sbjct: 257 tctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgccgggggc 198
Query: 453 acaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggc 512
|||| | || ||||| ||||||| || || |||||||| |||||||||| || | |
Sbjct: 197 acaattgacacggagcgagtgcacctagcgtacgtgtagcacaggttgtttgtcagagtc 138
Query: 513 tgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggccta 572
|||| || || ||||| || |||||||||||||| ||||||||| | |||||||| |
Sbjct: 137 tgcagctcatcagctgtaaacttgttctcatcccacaggacatggtaatgagcagggcgg 78
Query: 573 ctcgttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || || ||||| ||||| |||||||||||||| ||||| || |||||
Sbjct: 77 cttgttccctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatggca 19
>gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_G04_A002 3', mRNA sequence
Length = 665
Score = 83.8 bits (42), Expect = 2e-014
Identities = 179/222 (80%), Gaps = 2/222 (0%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||||||||| || || |||||||| | || ||||||||||| || |||||||
Sbjct: 222 tccatgtagaaccgggcgcggaatgctgctagatgagcgtagtatgctggtgggacaatg 163
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatgg-ctgcat 517
| || || |||||||||| || ||||||||||||||||| |||| || || |||||
Sbjct: 162 gatacagaacgtgtgcacctcgcgtaagtgtagcaaaggtt-attggtaagggtctgcaa 104
Query: 518 ttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgt 577
| | || |||||||| ||||| |||||||| | ||||||| |||||||||| | |||||
Sbjct: 103 tgcatcagctgtgaagttgttttcatcccacaagacatggtagtgagcaggacggctcgt 44
Query: 578 tccctggattccagcatgactacagaggtagaaatcaaactc 619
|||| ||| |||||||| || || ||| |||| ||||||||
Sbjct: 43 gcccttgatgccagcatggctgcacaggaagaagtcaaactc 2
>gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 75.8 bits (38), Expect = 4e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| |||||||| | || ||||| | || |||||||| || ||||||
Sbjct: 128 ttgttctcatcccacaggacatgataatgggcagggcggcttgttccctgaatgccagca 69
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||||||||||||||| || ||||| |||||
Sbjct: 68 tggctacagaggtagaaatcaaattcagttggatggca 31
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagg 451
||||||||||| ||||| || || ||||||| ||| || || |||||||||||
Sbjct: 263 tccatgtagaagcgagctcggaaggctgccaggtgagcataatatgcaggagg 211
>gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 75.8 bits (38), Expect = 4e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| |||||||| | || ||||| | || |||||||| || ||||||
Sbjct: 406 ttgttctcatcccacaggacatgataatgggcagggcggcttgttccctgaatgccagca 347
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||||||||||||||| || ||||| |||||
Sbjct: 346 tggctacagaggtagaaatcaaattcagttggatggca 309
>gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 567
Score = 75.8 bits (38), Expect = 4e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| |||||||| | || ||||| | || |||||||| || ||||||
Sbjct: 203 ttgttctcatcccacaggacatgataatgggcagggcggcttgttccctgaatgccagca 144
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||||||||||||||| || ||||| |||||
Sbjct: 143 tggctacagaggtagaaatcaaattcagttggatggca 106
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 393 tctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagg 451
||||| ||||||||||| ||||| || || ||||||| ||| || || |||||||||||
Sbjct: 344 tctggctccatgtagaagcgagctcggaaggctgccaggtgagcataatatgcaggagg 286
>gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 884
Score = 75.8 bits (38), Expect = 4e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| |||||||| | || ||||| | || |||||||| || ||||||
Sbjct: 471 ttgttctcatcccacaggacatgataatgggcagggcggcttgttccctgaatgccagca 530
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||||||||||||||| || ||||| |||||
Sbjct: 531 tggctacagaggtagaaatcaaattcagttggatggca 568
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 393 tctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagg 451
||||| ||||||||||| ||||| || || ||||||| ||| || || |||||||||||
Sbjct: 330 tctggctccatgtagaagcgagctcggaaggctgccaggtgagcataatatgcaggagg 388
>gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 403
Score = 73.8 bits (37), Expect = 2e-011
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| |||||||| | || ||||| | || |||||||| || ||||||
Sbjct: 124 ttgttctcatcccacaggacatgataatgggcagggcggcttgttccctgaatgccagca 65
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggc 630
|| |||||||||||||||||||| || ||||| ||||
Sbjct: 64 tggctacagaggtagaaatcaaattcagttggatggc 28
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagg 451
||||||||||| ||||| || || ||||||| ||| || || |||||||||||
Sbjct: 259 tccatgtagaagcgagctcggaaggctgccaggtgagcataatatgcaggagg 207
>gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 3', mRNA sequence
Length = 628
Score = 71.9 bits (36), Expect = 7e-011
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 536 gttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagcatg 595
||||||||| |||||||||| |||| | ||||| || ||||||| |||||||||||
Sbjct: 176 gttctcatcatagaggacatgatagtgtgttggcctgcttgttcccttaattccagcatg 117
Query: 596 actacagaggtagaaatcaaactc 619
|||||||||||||||||||||||
Sbjct: 116 gctacagaggtagaaatcaaactc 93
Score = 65.9 bits (33), Expect = 4e-009
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 420 aatgctgccaagtgtgcgtagtatgcaggagggacaacacaaaccgagcgtgtgcaccgg 479
|||||||||| ||| |||||||| || || || |||||| |||| | ||||||||| ||
Sbjct: 292 aatgctgccaggtgagcgtagtaggctggtggaacaacagaaacagcgcgtgtgcagcgt 233
Query: 480 gcataagtgtagcaaaggttgtttg 504
|| || |||||||||||||||||||
Sbjct: 232 gcgtatgtgtagcaaaggttgtttg 208
>gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 5', mRNA sequence
Length = 763
Score = 71.9 bits (36), Expect = 7e-011
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 536 gttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagcatg 595
||||||||| |||||||||| |||| | ||||| || ||||||| |||||||||||
Sbjct: 587 gttctcatcatagaggacatgatagtgtgttggcctgcttgttcccttaattccagcatg 528
Query: 596 actacagaggtagaaatcaaactc 619
|||||||||||||||||||||||
Sbjct: 527 gctacagaggtagaaatcaaactc 504
Score = 65.9 bits (33), Expect = 4e-009
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 420 aatgctgccaagtgtgcgtagtatgcaggagggacaacacaaaccgagcgtgtgcaccgg 479
|||||||||| ||| |||||||| || || || |||||| |||| | ||||||||| ||
Sbjct: 703 aatgctgccaggtgagcgtagtaggctggtggaacaacagaaacagcgcgtgtgcagcgt 644
Query: 480 gcataagtgtagcaaaggttgtttg 504
|| || |||||||||||||||||||
Sbjct: 643 gcgtatgtgtagcaaaggttgtttg 619
>gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 711
Score = 54.0 bits (27), Expect = 2e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
|||||||| |||||||||| || | ||||| || || ||||| || ||||||||||||
Sbjct: 410 gtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctcatcc 351
Query: 546 cagaggacatgggagtgagcagg 568
|| ||||||||| | ||||||||
Sbjct: 350 cacaggacatggtaatgagcagg 328
Score = 42.1 bits (21), Expect = 0.061
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 591 gcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| ||||| |||||||||||||| ||||| || |||||
Sbjct: 225 gcatggctacacaggtagaaatcaaattccgtaggatggca 185
>gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147696, DNA
sequence
Length = 711
Score = 54.0 bits (27), Expect = 2e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
|||||||| |||||||||| || | ||||| || || ||||| || ||||||||||||
Sbjct: 267 gtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctcatcc 208
Query: 546 cagaggacatgggagtgagcagg 568
|| ||||||||| | ||||||||
Sbjct: 207 cacaggacatggtaatgagcagg 185
Score = 42.1 bits (21), Expect = 0.061
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 591 gcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| ||||| |||||||||||||| ||||| || |||||
Sbjct: 82 gcatggctacacaggtagaaatcaaattccgtaggatggca 42
>gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 739
Score = 54.0 bits (27), Expect = 2e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
|||||||| |||||||||| || | ||||| || || ||||| || ||||||||||||
Sbjct: 307 gtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctcatcc 248
Query: 546 cagaggacatgggagtgagcagg 568
|| ||||||||| | ||||||||
Sbjct: 247 cacaggacatggtaatgagcagg 225
Score = 42.1 bits (21), Expect = 0.061
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 591 gcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| ||||| |||||||||||||| ||||| || |||||
Sbjct: 122 gcatggctacacaggtagaaatcaaattccgtaggatggca 82
>gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 758
Score = 54.0 bits (27), Expect = 2e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
|||||||| |||||||||| || | ||||| || || ||||| || ||||||||||||
Sbjct: 102 gtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctcatcc 43
Query: 546 cagaggacatgggagtgagcagg 568
|| ||||||||| | ||||||||
Sbjct: 42 cacaggacatggtaatgagcagg 20
>gb|BZ366524.1|BZ366524 ic97f02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic97f02 5', DNA sequence
Length = 722
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|||||||||||||| | |||||||||||||||
Sbjct: 591 ccagcatgactacacaagtagaaatcaaactc 622
>gb|CW030108.1|CW030108 104_258_10500065_114_30403 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500065, DNA
sequence
Length = 840
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|||||||||||||| | |||||||||||||||
Sbjct: 188 ccagcatgactacacaagtagaaatcaaactc 219
>gb|CW089146.1|CW089146 104_434_10948530_115_32585_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948530, DNA
sequence
Length = 742
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|||||||||||||| | |||||||||||||||
Sbjct: 366 ccagcatgactacacaagtagaaatcaaactc 335
>gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085c03, DNA
sequence
Length = 752
Score = 48.1 bits (24), Expect = 0.001
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
|||||||| |||||||||| || | ||||| || || ||||| || ||||||||||||
Sbjct: 79 gtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctcatcc 20
Query: 546 cagaggacatgg 557
|| |||||||||
Sbjct: 19 cacaggacatgg 8
>gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118005, DNA
sequence
Length = 710
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 594 tgactacagaggtagaaatcaaactccgttgggtg 628
||||| || |||||||||||||||||| |||||||
Sbjct: 452 tgactgcacaggtagaaatcaaactcccttgggtg 486
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 471 gtgcaccgggcataagtgtagcaaaggttgt 501
|||||||||||| | ||||||||||||||||
Sbjct: 329 gtgcaccgggcaaacgtgtagcaaaggttgt 359
>gb|CW226444.1|CW226444 104_664_11204889_116_37215_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204889, DNA
sequence
Length = 569
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 aactaaggacctagatgctttca 127
|||||||||||||||||||||||
Sbjct: 19 aactaaggacctagatgctttca 41
>gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 471 gtgcaccgggcataagtgtagcaaaggttgt 501
|||||||||||| | ||||||||||||||||
Sbjct: 162 gtgcaccgggcaaacgtgtagcaaaggttgt 132
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 594 tgactacagaggtagaaatcaaactccgttgggtg 628
||||| || |||||||||||||||||| |||||||
Sbjct: 39 tgactgcacaggtagaaatcaaactcccttgggtg 5
>gb|CW395471.1|CW395471 fsbb001f083i06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f083i06, DNA
sequence
Length = 662
Score = 44.1 bits (22), Expect = 0.015
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 13 tgtttctgcaaaacatacattaatcataataatc 46
||||||||||||||| |||||| ||||| |||||
Sbjct: 513 tgtttctgcaaaacacacattagtcatagtaatc 546
>gb|CW395472.1|CW395472 fsbb001f083i06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f083i06, DNA
sequence
Length = 562
Score = 44.1 bits (22), Expect = 0.015
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 13 tgtttctgcaaaacatacattaatcataataatc 46
||||||||||||||| |||||| ||||| |||||
Sbjct: 371 tgtttctgcaaaacacacattagtcatagtaatc 338
>gb|CW096175.1|CW096175 104_461_11001747_116_34332_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001747, DNA
sequence
Length = 380
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 599 acagaggtagaaatcaaactc 619
|||||||||||||||||||||
Sbjct: 380 acagaggtagaaatcaaactc 360
>gb|CW460238.1|CW460238 fsbb001f207f22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207f22, DNA
sequence
Length = 371
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagg 451
||||||||||| ||||| || || ||||||| ||| || || |||||||||||
Sbjct: 295 tccatgtagaagcgagctcggaaggctgccaggtgagcataatatgcaggagg 243
>gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagg 451
||||||||||| ||||| || || ||||||| ||| || || |||||||||||
Sbjct: 144 tccatgtagaagcgagctcggaaggctgccaggtgagcataatatgcaggagg 92
>gb|BZ347855.1|BZ347855 ho35g11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho35g11 5', DNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|||| ||||||||| ||||| |||||||||||
Sbjct: 129 ccagaatgactacaaaggtaaaaatcaaactc 160
>gb|CW178747.1|CW178747 104_592_11159733_116_36617_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159733, DNA
sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|||| ||||||||| ||||| |||||||||||
Sbjct: 524 ccagaatgactacaaaggtaaaaatcaaactc 493
>gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187029, DNA
sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.24
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||| || || ||| |||||||||| || |||||||||||
Sbjct: 542 ccagcatggctgcacaggaagaaatcaaattctgttgggtggca 585
>gb|CW447924.1|CW447924 fsbb001f181e09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181e09, DNA
sequence
Length = 351
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|||| ||||||||| ||||| |||||||||||
Sbjct: 208 ccagaatgactacaaaggtaaaaatcaaactc 239
>gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.24
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
||||| ||||||| ||||||||||| || ||||||||||
Sbjct: 239 gagcgggtgcaccttgcataagtgtaacagaggttgtttg 200
>gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 437
Score = 40.1 bits (20), Expect = 0.24
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
||||| ||||||| ||||||||||| || ||||||||||
Sbjct: 232 gagcgggtgcaccttgcataagtgtaacagaggttgtttg 193
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,551
Number of Sequences: 832831
Number of extensions: 148551
Number of successful extensions: 41664
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41588
Number of HSP's gapped (non-prelim): 66
length of query: 631
length of database: 491,359,669
effective HSP length: 19
effective length of query: 612
effective length of database: 475,535,880
effective search space: 291027958560
effective search space used: 291027958560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)