BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.1
(987 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL195140.1|CL195140 104_420_10942159_114_32302_028 Sorgh... 565 e-159
gb|CW136107.1|CW136107 104_521_11118204_116_34845_048 Sorgh... 543 e-152
gb|CW136108.1|CW136108 104_521_11118204_148_34841_048 Sorgh... 278 9e-073
gb|CW464658.1|CW464658 fsbb001f215a12k0 Sorghum methylation... 278 9e-073
gb|CW482801.1|CW482801 fsbb001f244b09f0 Sorghum methylation... 278 9e-073
gb|BG412450.1|BG412450 OV2_34_C12.g1_A002 Ovary 2 (OV2) Sor... 260 2e-067
gb|BG412749.1|BG412749 OV2_34_C12.b1_A002 Ovary 2 (OV2) Sor... 174 1e-041
gb|CW220361.1|CW220361 104_655_11197308_116_37156_048 Sorgh... 80 4e-013
gb|CW220362.1|CW220362 104_655_11197308_148_37155_048 Sorgh... 80 4e-013
gb|CW481549.1|CW481549 fsbb001f241d06f0 Sorghum methylation... 80 4e-013
gb|CW135331.1|CW135331 104_519_11117788_148_34827_002 Sorgh... 60 4e-007
gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedl... 60 4e-007
gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed see... 60 4e-007
gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-defic... 60 4e-007
gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stres... 60 4e-007
gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stres... 60 4e-007
gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots S... 60 4e-007
gb|BI075831.1|BI075831 IP1_21_G05.b1_A002 Immature pannicle... 56 6e-006
gb|CL172100.1|CL172100 104_374_10889911_116_31775_199 Sorgh... 54 3e-005
gb|CL172101.1|CL172101 104_374_10889911_148_31774_199 Sorgh... 54 3e-005
gb|CW143277.1|CW143277 104_535_11137329_148_34958_047 Sorgh... 54 3e-005
gb|CW318661.1|CW318661 104_811_11474070_148_35883_031 Sorgh... 54 3e-005
gb|CW386714.1|CW386714 fsbb001f070m01f0 Sorghum methylation... 54 3e-005
gb|CN144206.1|CN144206 WOUND1_20_G04.g1_A002 Wounded leaves... 52 1e-004
gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots ... 52 1e-004
gb|CL150304.1|CL150304 104_331_10778427_116_31356_363 Sorgh... 50 4e-004
gb|CW408700.1|CW408700 fsbb001f102l07f0 Sorghum methylation... 50 4e-004
gb|CW059494.1|CW059494 104_302_10519350_114_30165 Sorghum m... 46 0.006
gb|BE917670.1|BE917670 OV1_6_F07.g1_A002 Ovary 1 (OV1) Sorg... 46 0.006
gb|BZ413005.1|BZ413005 203a3_20 Subclones from BAC clones m... 44 0.024
gb|CL171844.1|CL171844 104_374_10889716_148_31774_004 Sorgh... 44 0.024
gb|CL174842.1|CL174842 104_379_10891942_116_31769_310 Sorgh... 44 0.024
gb|CL189564.1|CL189564 104_406_10902382_116_32474_081 Sorgh... 44 0.024
gb|CW204511.1|CW204511 104_632_11186581_148_36922_055 Sorgh... 44 0.024
gb|CW221658.1|CW221658 104_656_11198028_116_37169_034 Sorgh... 44 0.024
gb|CW230207.1|CW230207 104_671_11207725_148_37263_049 Sorgh... 44 0.024
gb|CW267474.1|CW267474 104_737_11400757_116_35291_051 Sorgh... 44 0.024
gb|CW349738.1|CW349738 fsbb001f010l15k0 Sorghum methylation... 44 0.024
gb|CW471323.1|CW471323 fsbb001f225c11k0 Sorghum methylation... 44 0.024
gb|BG240213.1|BG240213 OV1_19_C06.b1_A002 Ovary 1 (OV1) Sor... 44 0.024
gb|CW064377.1|CW064377 104_310_10522532_114_30142 Sorghum m... 42 0.096
gb|CW071439.1|CW071439 104_323_10591520_114_30474 Sorghum m... 42 0.096
gb|CW088882.1|CW088882 104_434_10948378_115_32585_047 Sorgh... 42 0.096
gb|CW096538.1|CW096538 104_462_11001950_116_34349_059 Sorgh... 42 0.096
gb|CW179534.1|CW179534 104_593_11160150_148_36628_019 Sorgh... 42 0.096
gb|CW232454.1|CW232454 104_685_11212826_116_37426_013 Sorgh... 42 0.096
gb|CW256638.1|CW256638 104_721_11226900_148_35145_036 Sorgh... 42 0.096
gb|CW383343.1|CW383343 fsbb001f065m14f0 Sorghum methylation... 42 0.096
gb|CW409383.1|CW409383 fsbb001f103k17f0 Sorghum methylation... 42 0.096
gb|CW421780.1|CW421780 fsbb001f130l24f0 Sorghum methylation... 42 0.096
gb|CW423378.1|CW423378 fsbb001f133c19f0 Sorghum methylation... 42 0.096
gb|CW449840.1|CW449840 fsbb001f188c21k0 Sorghum methylation... 42 0.096
gb|CW460589.1|CW460589 fsbb001f207n18f0 Sorghum methylation... 42 0.096
gb|CW470839.1|CW470839 fsbb001f224e15k0 Sorghum methylation... 42 0.096
gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete s... 42 0.096
gb|CL154623.1|CL154623 104_340_10781548_114_31469_028 Sorgh... 40 0.38
gb|CW079177.1|CW079177 104_399_10899353_114_32392_079 Sorgh... 40 0.38
gb|CW087663.1|CW087663 104_432_10947761_114_32550_073 Sorgh... 40 0.38
gb|CW087664.1|CW087664 104_432_10947761_116_32554_073 Sorgh... 40 0.38
gb|CW134835.1|CW134835 104_519_11117521_148_34824_011 Sorgh... 40 0.38
gb|CW140252.1|CW140252 104_530_11135684_148_34917_068 Sorgh... 40 0.38
gb|CW169189.1|CW169189 104_579_11154540_148_36501_046 Sorgh... 40 0.38
gb|CW192563.1|CW192563 104_615_11179095_148_36774_064 Sorgh... 40 0.38
gb|CW214761.1|CW214761 104_646_11194182_148_37053_017 Sorgh... 40 0.38
gb|CW219996.1|CW219996 104_654_11197111_116_37145_024 Sorgh... 40 0.38
gb|CW219997.1|CW219997 104_654_11197111_148_37146_024 Sorgh... 40 0.38
gb|CW227643.1|CW227643 104_667_11205918_148_37245_029 Sorgh... 40 0.38
gb|CW260111.1|CW260111 104_726_11228790_116_35191_019 Sorgh... 40 0.38
gb|CW260112.1|CW260112 104_726_11228790_148_35187_019 Sorgh... 40 0.38
gb|CW288528.1|CW288528 104_767_11411999_148_35539_096 Sorgh... 40 0.38
gb|CW294783.1|CW294783 104_775_11415367_116_35604_018 Sorgh... 40 0.38
gb|CW294784.1|CW294784 104_775_11415367_148_35608_018 Sorgh... 40 0.38
gb|CW343807.1|CW343807 104_846_11487622_116_36192_091 Sorgh... 40 0.38
gb|CW343808.1|CW343808 104_846_11487622_148_36191_091 Sorgh... 40 0.38
gb|CW351056.1|CW351056 fsbb001f012k14k0 Sorghum methylation... 40 0.38
gb|CW399133.1|CW399133 fsbb001f088n19f0 Sorghum methylation... 40 0.38
gb|CW399134.1|CW399134 fsbb001f088n19k0 Sorghum methylation... 40 0.38
gb|CW406941.1|CW406941 fsbb001f100d03k0 Sorghum methylation... 40 0.38
gb|CW408701.1|CW408701 fsbb001f102l07k0 Sorghum methylation... 40 0.38
gb|CW417154.1|CW417154 fsbb001f120a10f0 Sorghum methylation... 40 0.38
gb|CW417155.1|CW417155 fsbb001f120a10k0 Sorghum methylation... 40 0.38
gb|CW431323.1|CW431323 fsbb001f145h12f0 Sorghum methylation... 40 0.38
gb|CW461974.1|CW461974 fsbb001f209o05f0 Sorghum methylation... 40 0.38
gb|CW482454.1|CW482454 fsbb001f242i21k0 Sorghum methylation... 40 0.38
gb|BE355544.1|BE355544 DG1_115_F11.b1_A002 Dark Grown 1 (DG... 40 0.38
gb|BE361754.1|BE361754 DG1_82_G01.b1_A002 Dark Grown 1 (DG1... 40 0.38
gb|BE917749.1|BE917749 OV1_6_F07.b1_A002 Ovary 1 (OV1) Sorg... 40 0.38
gb|BF421314.1|BF421314 FM1_7_B08.b1_A003 Floral-Induced Mer... 40 0.38
gb|BG052938.1|BG052938 RHIZ2_15_B11.b1_A003 Rhizome2 (RHIZ2... 40 0.38
gb|BG322688.1|BG322688 EM1_13_B01.b1_A002 Embryo 1 (EM1) So... 40 0.38
gb|BG355452.1|BG355452 EM1_16_F05.b1_A002 Embryo 1 (EM1) So... 40 0.38
gb|BG355480.1|BG355480 EM1_17_A05.b1_A002 Embryo 1 (EM1) So... 40 0.38
gb|BG357684.1|BG357684 OV2_29_A05.b1_A002 Ovary 2 (OV2) Sor... 40 0.38
gb|BG463957.1|BG463957 EM1_52_H10.b1_A002 Embryo 1 (EM1) So... 40 0.38
gb|BG556164.1|BG556164 EM1_68_E09.b1_A002 Embryo 1 (EM1) So... 40 0.38
gb|BG556631.1|BG556631 EM1_37_F06.b1_A002 Embryo 1 (EM1) So... 40 0.38
gb|BG557781.1|BG557781 EM1_53_A06.b1_A002 Embryo 1 (EM1) So... 40 0.38
gb|BG557821.1|BG557821 EM1_53_G02.b1_A002 Embryo 1 (EM1) So... 40 0.38
gb|BG817383.1|BG817383 EM1_75_B09.b1_A002 Embryo 1 (EM1) So... 40 0.38
gb|CD230048.1|CD230048 SS1_40_H09.g1_A012 Salt-stressed see... 40 0.38
gb|CD235047.1|CD235047 SS1_19_A02.g1_A012 Salt-stressed see... 40 0.38
gb|CD432827.1|CD432827 ETH1_33_A06.g1_A002 Ethylene-treated... 40 0.38
gb|CD462412.1|CD462412 ETH1_37_C09.g1_A002 Ethylene-treated... 40 0.38
gb|CF429677.1|CF429677 PH1_23_G06.g1_A002 Phosphorous-defic... 40 0.38
gb|CF480255.1|CF480255 POL1_64_D10.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF480604.1|CF480604 POL1_66_F07.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF481582.1|CF481582 POL1_72_G04.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF483030.1|CF483030 POL1_10_F12.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF483356.1|CF483356 POL1_21_E05.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF483514.1|CF483514 POL1_22_G01.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF483530.1|CF483530 POL1_22_H06.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF484035.1|CF484035 POL1_2_E09.g1_A002 Pollen Sorghum bi... 40 0.38
gb|CF484058.1|CF484058 POL1_2_H04.g1_A002 Pollen Sorghum bi... 40 0.38
gb|CF485111.1|CF485111 POL1_29_B06.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF485607.1|CF485607 POL1_32_C02.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF485620.1|CF485620 POL1_32_D03.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF486727.1|CF486727 POL1_39_A01.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF486942.1|CF486942 POL1_40_F11.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF487238.1|CF487238 POL1_42_C11.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF487422.1|CF487422 POL1_43_E07.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF487539.1|CF487539 POL1_44_A01.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF487752.1|CF487752 POL1_45_E10.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF488822.1|CF488822 POL1_52_A07.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF489450.1|CF489450 POL1_57_D11.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF489624.1|CF489624 POL1_58_E04.g1_A002 Pollen Sorghum b... 40 0.38
gb|CF489922.1|CF489922 POL1_61_A04.g1_A002 Pollen Sorghum b... 40 0.38
gb|CN132704.1|CN132704 OX1_7_E09.g1_A002 Oxidatively-stress... 40 0.38
gb|CN134486.1|CN134486 OX1_26_D09.g1_A002 Oxidatively-stres... 40 0.38
gb|CN146336.1|CN146336 WOUND1_39_D07.g1_A002 Wounded leaves... 40 0.38
gb|CN151326.1|CN151326 WOUND1_74_G01.g1_A002 Wounded leaves... 40 0.38
gb|CX607108.1|CX607108 ANR1_6_F04.g1_A002 Anaerobic roots S... 40 0.38
gb|CX620549.1|CX620549 GABR1_52_C02.g1_A002 GA- or brassino... 40 0.38
gb|CX623279.1|CX623279 GABR1_68_F03.g1_A002 GA- or brassino... 40 0.38
>gb|CL195140.1|CL195140 104_420_10942159_114_32302_028 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942159, DNA
sequence
Length = 654
Score = 565 bits (285), Expect = e-159
Identities = 378/409 (92%)
Strand = Plus / Plus
Query: 298 ttagaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtg 357
||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 159 ttagaagttcttggacgcctggtacgtgacgccgaacttccagtcctcggggaggacgtg 218
Query: 358 ccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggt 417
||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 219 ccacgacgtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactcgcaggt 278
Query: 418 gaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgac 477
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 279 gaggtcctccccggtctgccacactaccccccagttgcgcttcagctccgtccacttgac 338
Query: 478 gcgcttgctccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgat 537
|||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||
Sbjct: 339 gcgcttgctccccttcaccgacaccgccgccacgtcgccggcgccgcccacgttggtgac 398
Query: 538 cgtcaccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgc 597
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 399 cgtcaccatgttgaagtacttgttcccggcgatggcgtaccggatgccgccctgcctcgc 458
Query: 598 gcacgccaccctgcggtaggagatcggcacgatgccggccttctcttgcgcgatctggag 657
||||||||||| |||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct: 459 gcacgccacccgccggtaggagacgggcacgatgccggccttctcctccgcgatctggag 518
Query: 658 gaacgcgggcatgctgaggtcgaagtgctcccgcggtggcttgcaccac 706
|||||| |||||| |||||||||||||||||||| || |||||||||
Sbjct: 519 gaacgccggcatggacaggtcgaagtgctcccgcggcgggttgcaccac 567
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 713 ttgggcgggcacaggtcggtcaccgtcaccaccagcgccgccgc 756
||||||||||||| || ||| |||||||||||| |||||||||
Sbjct: 595 ttgggcgggcacaagttcgtcgccgtcaccaccaacgccgccgc 638
>gb|CW136107.1|CW136107 104_521_11118204_116_34845_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118204, DNA
sequence
Length = 597
Score = 543 bits (274), Expect = e-152
Identities = 364/394 (92%)
Strand = Plus / Plus
Query: 298 ttagaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtg 357
||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 204 ttagaagttcttggacgcctggtacgtgacgccgaacttccagtcctcggggaggacgtg 263
Query: 358 ccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggt 417
||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 264 ccacgacgtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactcgcaggt 323
Query: 418 gaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgac 477
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 324 gaggtcctccccggtctgccacactaccccccagttgcgcttcagctccgtccacttgac 383
Query: 478 gcgcttgctccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgat 537
|||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||
Sbjct: 384 gcgcttgctccccttcaccgacaccgccgccacgtcgccggcgccgcccacgttggtgac 443
Query: 538 cgtcaccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgc 597
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 444 cgtcaccatgttgaagtacttgttcccggcgatggcgtaccggatgccgccctgcctcgc 503
Query: 598 gcacgccaccctgcggtaggagatcggcacgatgccggccttctcttgcgcgatctggag 657
||||||||||| |||||||||| |||||||||||||||||||| | |||||||||||
Sbjct: 504 gcacgccacccgccggtaggagacgggcacgatgccggccttctcctccgcgatctggaa 563
Query: 658 gaacgcgggcatgctgaggtcgaagtgctcccgc 691
|||||| |||||| ||||||||||||||||||
Sbjct: 564 gaacgccggcatggacaggtcgaagtgctcccgc 597
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 141 tcatttgagtttgcacattgattt 164
|||||||| |||||||||||||||
Sbjct: 33 tcatttgaatttgcacattgattt 56
>gb|CW136108.1|CW136108 104_521_11118204_148_34841_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118204, DNA
sequence
Length = 526
Score = 278 bits (140), Expect = 9e-073
Identities = 203/224 (90%)
Strand = Plus / Minus
Query: 761 ggcttgcacccgctagggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtg 820
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 385 ggcttgcacccgtcggggctgtccacgcaccgcacctcgtagcaaccgccgcaggccgcg 326
Query: 821 ccgtcaccgaacagcaccgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgc 880
|| | ||||||||||||| ||||||||||||||||||||||||||| |||| | |||
Sbjct: 325 ccattgccgaacagcaccgagctcacggccaccgtctgcacgccgtagccctcggaccgc 266
Query: 881 gtgtccttgtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaag 940
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 gtgtccttgtacccgcacgcgcccgccgtggtgccggacccgtcccggccgccgtagaag 206
Query: 941 gtcgcgtgggcgggtttccacggcccggccgtgaacttgccgtg 984
|||||||||||| | |||||| ||||| ||||||||||||||
Sbjct: 205 gtcgcgtgggcgcgcttccactcgccggcggtgaacttgccgtg 162
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 713 ttgggcgggcacaggtcggtcaccgtcaccaccagcgccgccgc 756
|||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 448 ttgggcgggcacaggttcgtcgccgtcaccaccagcgccgccgc 405
Score = 54.0 bits (27), Expect = 3e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 656 aggaacgcgggcatgctgaggtcgaagtgctcccgcggtggcttgcaccac 706
|||||||| |||||| |||||||||||||||||||| || |||||||||
Sbjct: 526 aggaacgccggcatggacaggtcgaagtgctcccgcggcgggttgcaccac 476
>gb|CW464658.1|CW464658 fsbb001f215a12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215a12, DNA
sequence
Length = 278
Score = 278 bits (140), Expect = 9e-073
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 761 ggcttgcacccgctagggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtg 820
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 13 ggcttgcacccgtcggggctgtccacgcaccgcacctcgtagcaaccgccgcaggccgcg 72
Query: 821 ccgtcaccgaacagcaccgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgc 880
|| | ||||||||||||| ||||||||||||||||||||||||||| |||| | |||
Sbjct: 73 ccattgccgaacagcaccgagctcacggccaccgtctgcacgccgtagccctcggaccgc 132
Query: 881 gtgtccttgtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaag 940
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 133 gtgtccttgtacccgcacgcgcccgccgtggtgccggacccgtcccggccgccgtagaag 192
Query: 941 gtcgcgtgggcgggtttccacggcccggccgtgaacttgccgtg 984
|||||||||||| | |||||| ||||| ||||||||||||||
Sbjct: 193 gtcgcgtgggcgcgcttccactcgccggcggtgaacttgccgtg 236
>gb|CW482801.1|CW482801 fsbb001f244b09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244b09, DNA
sequence
Length = 515
Score = 278 bits (140), Expect = 9e-073
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 761 ggcttgcacccgctagggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtg 820
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 174 ggcttgcacccgtcggggctgtccacgcaccgcacctcgtagcaaccgccgcaggccgcg 233
Query: 821 ccgtcaccgaacagcaccgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgc 880
|| | ||||||||||||| ||||||||||||||||||||||||||| |||| | |||
Sbjct: 234 ccattgccgaacagcaccgagctcacggccaccgtctgcacgccgtagccctcggaccgc 293
Query: 881 gtgtccttgtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaag 940
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 294 gtgtccttgtacccgcacgcgcccgccgtggtgccggacccgtcccggccgccgtagaag 353
Query: 941 gtcgcgtgggcgggtttccacggcccggccgtgaacttgccgtg 984
|||||||||||| | |||||| ||||| ||||||||||||||
Sbjct: 354 gtcgcgtgggcgcgcttccactcgccggcggtgaacttgccgtg 397
Score = 79.8 bits (40), Expect = 4e-013
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 635 gccttctcttgcgcgatctggaggaacgcgggcatgctgaggtcgaagtgctcccgcggt 694
|||||||| | |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 12 gccttctcctccgcgatctggaggaacgccggcatggacaggtcgaagtgctcccgcggc 71
Query: 695 ggcttgcaccac 706
|| |||||||||
Sbjct: 72 gggttgcaccac 83
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 713 ttgggcgggcacaggtcggtcaccgtcaccaccagcgccgccgc 756
|||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 111 ttgggcgggcacaggttcgtcgccgtcaccaccagcgccgccgc 154
>gb|BG412450.1|BG412450 OV2_34_C12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 657
Score = 260 bits (131), Expect = 2e-067
Identities = 284/335 (84%)
Strand = Plus / Minus
Query: 353 acgtgccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcg 412
|||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct: 540 acgtgccaggaggtggccttgcggtggtcgccggtcatgacgcggaacgtcagcgactcg 481
Query: 413 caggtgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccac 472
| |||||||| || | || ||| | || |||||| ||||||||||| |||||||
Sbjct: 480 ccggtgaggttgacctccgtgatccagagctgtccccagctgcgcttcatcggcgtccac 421
Query: 473 ttgacgcgcttgctccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattg 532
|||||||||||| | ||||||||||||| |||| | | ||| || ||||||||||| |||
Sbjct: 420 ttgacgcgcttgttgcccttcaccgacagcgccaccacgtccccggcgccgcccacgttg 361
Query: 533 gtgatcgtcaccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgc 592
|| | | ||||||||||| ||| | |||||| ||||||||||||||||||||||| |||
Sbjct: 360 gtcaccatcaccatgttgtagttcgggttccccgtgatggtgtaccggatgccgccttgc 301
Query: 593 ttcgcgcacgccaccctgcggtaggagatcggcacgatgccggccttctcttgcgcgatc 652
|||||||||||||| |||| |||| ||| ||||| |||||||||||||| | |||||
Sbjct: 300 ctcgcgcacgccaccttgcgataggtgatgggcacaatgccggccttctcctcgtcgatc 241
Query: 653 tggaggaacgcgggcatgctgaggtcgaagtgctc 687
| ||||||||| |||||| ||||||||||||||||
Sbjct: 240 ttgaggaacgccggcatggtgaggtcgaagtgctc 206
>gb|BG412749.1|BG412749 OV2_34_C12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 607
Score = 174 bits (88), Expect = 1e-041
Identities = 181/212 (85%)
Strand = Plus / Minus
Query: 476 acgcgcttgctccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtg 535
||||||||| | ||||||||||||| |||| | | ||| || ||||||||||| |||||
Sbjct: 607 acgcgcttgttgcccttcaccgacagcgccaccacgtccccggcgccgcccacgttggtc 548
Query: 536 atcgtcaccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttc 595
| | ||||||||||| ||| | |||||| ||||||||||||||||||||||| ||| ||
Sbjct: 547 accatcaccatgttgtagttcgggttccccgtgatggtgtaccggatgccgccttgcctc 488
Query: 596 gcgcacgccaccctgcggtaggagatcggcacgatgccggccttctcttgcgcgatctgg 655
|||||||||||| |||| |||| ||| ||||| |||||||||||||| | |||||| |
Sbjct: 487 gcgcacgccaccttgcgataggtgatgggcacaatgccggccttctcctcgtcgatcttg 428
Query: 656 aggaacgcgggcatgctgaggtcgaagtgctc 687
|||||||| |||||| ||||||||||||||||
Sbjct: 427 aggaacgccggcatggtgaggtcgaagtgctc 396
Score = 63.9 bits (32), Expect = 3e-008
Identities = 60/67 (89%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 885 ccttgtacccgcacgcgcc--cg-ccgtggtgccggacccgtcccgcccgccgtagaagg 941
||||||| ||||||||||| || ||||||||||||||||||| || ||||||||||| |
Sbjct: 231 ccttgtagccgcacgcgccgccgtccgtggtgccggacccgtcgcggccgccgtagaacg 172
Query: 942 tcgcgtg 948
|||||||
Sbjct: 171 tcgcgtg 165
>gb|CW220361.1|CW220361 104_655_11197308_116_37156_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197308, DNA
sequence
Length = 617
Score = 79.8 bits (40), Expect = 4e-013
Identities = 103/124 (83%)
Strand = Plus / Minus
Query: 488 cccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccatg 547
||||||||||||||||||| | |||||||||||||||||| || ||||| ||||| |
Sbjct: 214 cccttcaccgacaccgccgtcaagtcgccagcgccgcccacgtttgtgatgagcaccagg 155
Query: 548 ttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccacc 607
|||||| || ||| |||||||| |||||||||| |||||||| |||||||||||
Sbjct: 154 acgaagtaggagtggccgttgatggtgaaccggatgccaccctgcttgacgcacgccacc 95
Query: 608 ctgc 611
||||
Sbjct: 94 ctgc 91
>gb|CW220362.1|CW220362 104_655_11197308_148_37155_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197308, DNA
sequence
Length = 621
Score = 79.8 bits (40), Expect = 4e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 488 cccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccatg 547
||||||||||||||||||| | |||||||||||||||||| || ||||| ||||| |
Sbjct: 431 cccttcaccgacaccgccgtcaagtcgccagcgccgcccacgtttgtgatgagcaccagg 490
Query: 548 ttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccacc 607
|||||| || ||| |||||||| |||||||||| |||||||| |||||||||||
Sbjct: 491 acgaagtaggagtggccgttgatggtgaaccggatgccaccctgcttgacgcacgccacc 550
Query: 608 ctgc 611
||||
Sbjct: 551 ctgc 554
>gb|CW481549.1|CW481549 fsbb001f241d06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f241d06, DNA
sequence
Length = 386
Score = 79.8 bits (40), Expect = 4e-013
Identities = 103/124 (83%)
Strand = Plus / Minus
Query: 488 cccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccatg 547
||||||||||||||||||| | |||||||||||||||||| || ||||| ||||| |
Sbjct: 211 cccttcaccgacaccgccgtcaagtcgccagcgccgcccacgtttgtgatgagcaccagg 152
Query: 548 ttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccacc 607
|||||| || ||| |||||||| |||||||||| |||||||| |||||||||||
Sbjct: 151 acgaagtaggagtggccgttgatggtgaaccggatgccaccctgcttgacgcacgccacc 92
Query: 608 ctgc 611
||||
Sbjct: 91 ctgc 88
>gb|CW135331.1|CW135331 104_519_11117788_148_34827_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117788, DNA
sequence
Length = 426
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 cccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgat 537
||||||||||||||||||| | |||||||||||||||||| || |||||
Sbjct: 83 cccttcaccgacaccgccgtcaagtcgccagcgccgcccacgtttgtgat 34
>gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_A10_A012 5', mRNA sequence
Length = 632
Score = 60.0 bits (30), Expect = 4e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| ||||||| ||||||| |||| |||||| |||||| | ||||| || ||||
Sbjct: 583 tgatggtgaaccggatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggca 524
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 523 cgatgccggc 514
Score = 40.1 bits (20), Expect = 0.38
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
|||||| |||||||| || | ||||||||| |||| | ||||||||||| || |||||
Sbjct: 246 gtacccacacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaacgtggcgtg 187
Query: 949 ggcg 952
||||
Sbjct: 186 ggcg 183
>gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_30_D11_A012 5', mRNA sequence
Length = 691
Score = 60.0 bits (30), Expect = 4e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| ||||||| ||||||| |||| |||||| |||||| | ||||| || ||||
Sbjct: 578 tgatggtgaaccggatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggca 519
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 518 cgatgccggc 509
>gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A08_A002 5', mRNA sequence
Length = 787
Score = 60.0 bits (30), Expect = 4e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| ||||||| ||||||| |||| |||||| |||||| | ||||| || ||||
Sbjct: 578 tgatggtgaaccggatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggca 519
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 518 cgatgccggc 509
Score = 40.1 bits (20), Expect = 0.38
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
|||||| |||||||| || | ||||||||| |||| | ||||||||||| || |||||
Sbjct: 240 gtacccacacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaacgtggcgtg 181
Query: 949 ggcg 952
||||
Sbjct: 180 ggcg 177
>gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 3', mRNA sequence
Length = 725
Score = 60.0 bits (30), Expect = 4e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| ||||||| ||||||| |||| |||||| |||||| | ||||| || ||||
Sbjct: 239 tgatggtgaaccggatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggca 180
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 179 cgatgccggc 170
>gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 5', mRNA sequence
Length = 840
Score = 60.0 bits (30), Expect = 4e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| ||||||| ||||||| |||| |||||| |||||| | ||||| || ||||
Sbjct: 574 tgatggtgaaccggatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggca 515
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 514 cgatgccggc 505
Score = 40.1 bits (20), Expect = 0.38
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
|||||| |||||||| || | ||||||||| |||| | ||||||||||| || |||||
Sbjct: 237 gtacccacacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaacgtggcgtg 178
Query: 949 ggcg 952
||||
Sbjct: 177 ggcg 174
>gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_C12_A002 5', mRNA sequence
Length = 705
Score = 60.0 bits (30), Expect = 4e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| ||||||| ||||||| |||| |||||| |||||| | ||||| || ||||
Sbjct: 561 tgatggtgaaccggatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggca 502
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 501 cgatgccggc 492
Score = 40.1 bits (20), Expect = 0.38
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
|||||| |||||||| || | ||||||||| |||| | ||||||||||| || |||||
Sbjct: 224 gtacccacacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaacgtggcgtg 165
Query: 949 ggcg 952
||||
Sbjct: 164 ggcg 161
>gb|BI075831.1|BI075831 IP1_21_G05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 646
Score = 56.0 bits (28), Expect = 6e-006
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgca 600
||||| ||||||||| || |||| |||||||| ||||||||||||||| |||| ||||
Sbjct: 632 caccaggttgaagtaggagtgcccgttgatggtgaaccggatgccgcccttcttcacgca 573
Query: 601 cgccaccctgcggtaggagatcggcacgatgccggc 636
|| ||| || | | ||| || ||||||||||||||
Sbjct: 572 cggcactctcctgaaggcgacgggcacgatgccggc 537
Score = 40.1 bits (20), Expect = 0.38
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
||||||||||||||| || | ||||||||| |||| | ||||||||||| || |||||
Sbjct: 268 gtacccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaacgtggcgtg 209
>gb|CL172100.1|CL172100 104_374_10889911_116_31775_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889911, DNA
sequence
Length = 762
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgca 600
||||| ||||||||| || |||| |||||||| ||||||||||||||| |||| ||||
Sbjct: 626 caccaggttgaagtaggagtgcccgttgatggtgaaccggatgccgcccttcttcacgca 567
Query: 601 cgccaccctgc 611
|| ||| ||||
Sbjct: 566 cggcactctgc 556
>gb|CL172101.1|CL172101 104_374_10889911_148_31774_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889911, DNA
sequence
Length = 766
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgca 600
||||| ||||||||| || |||| |||||||| ||||||||||||||| |||| ||||
Sbjct: 330 caccaggttgaagtaggagtgcccgttgatggtgaaccggatgccgcccttcttcacgca 389
Query: 601 cgccaccctgc 611
|| ||| ||||
Sbjct: 390 cggcactctgc 400
>gb|CW143277.1|CW143277 104_535_11137329_148_34958_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137329, DNA
sequence
Length = 593
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgca 600
||||| ||||||||| || |||| |||||||| ||||||||||||||| |||| ||||
Sbjct: 322 caccaggttgaagtaggagtgcccgttgatggtgaaccggatgccgcccttcttcacgca 263
Query: 601 cgccaccctgc 611
|| ||| ||||
Sbjct: 262 cggcactctgc 252
>gb|CW318661.1|CW318661 104_811_11474070_148_35883_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474070, DNA
sequence
Length = 692
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgca 600
||||| ||||||||| || |||| |||||||| ||||||||||||||| |||| ||||
Sbjct: 432 caccaggttgaagtaggagtgcccgttgatggtgaaccggatgccgcccttcttcacgca 491
Query: 601 cgccaccctgc 611
|| ||| ||||
Sbjct: 492 cggcactctgc 502
>gb|CW386714.1|CW386714 fsbb001f070m01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070m01, DNA
sequence
Length = 339
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgca 600
||||| ||||||||| || |||| |||||||| ||||||||||||||| |||| ||||
Sbjct: 81 caccaggttgaagtaggagtgcccgttgatggtgaaccggatgccgcccttcttcacgca 22
Query: 601 cgccaccctgc 611
|| ||| ||||
Sbjct: 21 cggcactctgc 11
>gb|CN144206.1|CN144206 WOUND1_20_G04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_20_G04_A002 5', mRNA sequence
Length = 607
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| ||||||||||||||| |||| |||||| ||| || | | ||| || ||||
Sbjct: 607 tgatggtgaaccggatgccgcccttcttcacgcacggcactctcctgaaggcgacgggca 548
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 547 cgatgccggc 538
Score = 40.1 bits (20), Expect = 0.38
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
||||||||||||||| || | ||||||||| |||| | ||||||||||| || |||||
Sbjct: 270 gtacccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaacgtggcgtg 211
>gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_B08_A002 5', mRNA sequence
Length = 605
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| ||||||| ||||||| |||| |||| | |||||| | ||||| || ||||
Sbjct: 446 tgatggtgaaccggatcccgcccttcttcacgcatggcaccctcctgtaggcgacgggca 387
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 386 cgatgccggc 377
Score = 40.1 bits (20), Expect = 0.38
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
|||||| |||||||| || | ||||||||| |||| | ||||||||||| || |||||
Sbjct: 214 gtacccacacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaacgtggcgtg 155
Query: 949 ggcg 952
||||
Sbjct: 154 ggcg 151
>gb|CL150304.1|CL150304 104_331_10778427_116_31356_363 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778427, DNA
sequence
Length = 697
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgc 945
||||||||||||||| || |||| ||||||||||| |||||| |||||||||||
Sbjct: 410 gtacccgcacgcgccgcccatggtcccggacccgtcggacccgccatagaaggtcgc 354
>gb|CW408700.1|CW408700 fsbb001f102l07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102l07, DNA
sequence
Length = 667
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgc 945
||||||||||||||| || |||| ||||||||||| |||||| |||||||||||
Sbjct: 618 gtacccgcacgcgccgcccatggtcccggacccgtcggacccgccatagaaggtcgc 562
>gb|CW059494.1|CW059494 104_302_10519350_114_30165 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519350, DNA
sequence
Length = 558
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttc 595
||||| ||||||||| || |||| |||||||| ||||||||||||||| ||||
Sbjct: 59 caccaggttgaagtaggagtgcccgttgatggtgaaccggatgccgcccttcttc 5
>gb|BE917670.1|BE917670 OV1_6_F07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 673
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttc 595
||||| ||||||||| || |||| |||||||| ||||||||||||||| ||||
Sbjct: 58 caccaggttgaagtaggagtgcccgttgatggtgaaccggatgccgcccttcttc 4
>gb|BZ413005.1|BZ413005 203a3_20 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 203a3, DNA
sequence
Length = 826
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 599 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 562
>gb|CL171844.1|CL171844 104_374_10889716_148_31774_004 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889716, DNA
sequence
Length = 740
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 498 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 461
>gb|CL174842.1|CL174842 104_379_10891942_116_31769_310 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891942, DNA
sequence
Length = 681
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 376 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 339
>gb|CL189564.1|CL189564 104_406_10902382_116_32474_081 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902382, DNA
sequence
Length = 399
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 139 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 176
>gb|CW204511.1|CW204511 104_632_11186581_148_36922_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186581, DNA
sequence
Length = 692
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 447 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 410
>gb|CW221658.1|CW221658 104_656_11198028_116_37169_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11198028, DNA
sequence
Length = 641
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 442 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 405
>gb|CW230207.1|CW230207 104_671_11207725_148_37263_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207725, DNA
sequence
Length = 617
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 513 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 476
>gb|CW267474.1|CW267474 104_737_11400757_116_35291_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400757, DNA
sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 150 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 187
>gb|CW349738.1|CW349738 fsbb001f010l15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010l15, DNA
sequence
Length = 712
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 55 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 92
>gb|CW471323.1|CW471323 fsbb001f225c11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225c11, DNA
sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 909 tggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| |||| | |||||||||||| ||||||
Sbjct: 124 tggtgccggacgcgtcgctcccgccgtagaacgtcgcg 87
>gb|BG240213.1|BG240213 OV1_19_C06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 473
Score = 44.1 bits (22), Expect = 0.024
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcg 946
||||||||||| || || ||||||||||| |||| | |||||||||||| ||||||
Sbjct: 224 gtacccgcacgatccgcccatggtgccggacgcgtcgctcccgccgtagaacgtcgcg 167
>gb|CW064377.1|CW064377 104_310_10522532_114_30142 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522532, DNA
sequence
Length = 460
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 908 gtggtgccggacccgtcccgc 928
|||||||||||||||||||||
Sbjct: 296 gtggtgccggacccgtcccgc 316
>gb|CW071439.1|CW071439 104_323_10591520_114_30474 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591520, DNA
sequence
Length = 439
Score = 42.1 bits (21), Expect = 0.096
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgc 945
||||||||||||||| || | |||||||| |||| | |||||||||||| |||||
Sbjct: 106 gtacccgcacgcgccgcccatcgtgccggagacgtcgcccccgccgtagaacgtcgc 50
>gb|CW088882.1|CW088882 104_434_10948378_115_32585_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948378, DNA
sequence
Length = 710
Score = 42.1 bits (21), Expect = 0.096
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 785 acgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctc 844
|||||||| | ||||||||| ||||||||||| ||||| ||||||||| ||| ||||
Sbjct: 574 acgcaccggagctcgtagcagccgccgcaggcgctgccgcggccgaacagcgccgcgctc 515
Query: 845 a 845
|
Sbjct: 514 a 514
>gb|CW096538.1|CW096538 104_462_11001950_116_34349_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001950, DNA
sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.096
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 785 acgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctc 844
|||||||| | ||||||||| ||||||||||| ||||| ||||||||| ||| ||||
Sbjct: 127 acgcaccggagctcgtagcagccgccgcaggcgctgccgcggccgaacagcgccgcgctc 186
Query: 845 a 845
|
Sbjct: 187 a 187
>gb|CW179534.1|CW179534 104_593_11160150_148_36628_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160150, DNA
sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.096
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 785 acgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctc 844
|||||||| | ||||||||| ||||||||||| ||||| ||||||||| ||| ||||
Sbjct: 178 acgcaccggagctcgtagcagccgccgcaggcgctgccgcggccgaacagcgccgcgctc 119
Query: 845 a 845
|
Sbjct: 118 a 118
>gb|CW232454.1|CW232454 104_685_11212826_116_37426_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212826, DNA
sequence
Length = 650
Score = 42.1 bits (21), Expect = 0.096
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 733 caccgtcaccaccagcgccgccgcg 757
||||||| |||||||||||||||||
Sbjct: 340 caccgtctccaccagcgccgccgcg 316
>gb|CW256638.1|CW256638 104_721_11226900_148_35145_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226900, DNA
sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 736 cgtcaccaccagcgccgccgc 756
|||||||||||||||||||||
Sbjct: 101 cgtcaccaccagcgccgccgc 81
>gb|CW383343.1|CW383343 fsbb001f065m14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f065m14, DNA
sequence
Length = 621
Score = 42.1 bits (21), Expect = 0.096
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 733 caccgtcaccaccagcgccgccgcg 757
||||||| |||||||||||||||||
Sbjct: 67 caccgtctccaccagcgccgccgcg 43
>gb|CW409383.1|CW409383 fsbb001f103k17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f103k17, DNA
sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 736 cgtcaccaccagcgccgccgc 756
|||||||||||||||||||||
Sbjct: 119 cgtcaccaccagcgccgccgc 139
>gb|CW421780.1|CW421780 fsbb001f130l24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f130l24, DNA
sequence
Length = 743
Score = 42.1 bits (21), Expect = 0.096
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 785 acgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctc 844
|||||||| | ||||||||| ||||||||||| ||||| ||||||||| ||| ||||
Sbjct: 298 acgcaccggagctcgtagcagccgccgcaggcgctgccgcggccgaacagcgccgcgctc 357
Query: 845 a 845
|
Sbjct: 358 a 358
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 294,255
Number of Sequences: 832831
Number of extensions: 294255
Number of successful extensions: 85080
Number of sequences better than 0.5: 133
Number of HSP's better than 0.5 without gapping: 127
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 84787
Number of HSP's gapped (non-prelim): 294
length of query: 987
length of database: 491,359,669
effective HSP length: 20
effective length of query: 967
effective length of database: 474,703,049
effective search space: 459037848383
effective search space used: 459037848383
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)