BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023930.2.1
(544 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX622684.1|CX622684 GABR1_65_H12.b1_A002 GA- or brassino... 557 e-157
gb|CW040084.1|CW040084 104_273_10505880_114_30266 Sorghum m... 224 7e-057
gb|CW499260.1|CW499260 fsbb001f293o20f0 Sorghum methylation... 224 7e-057
gb|CW499261.1|CW499261 fsbb001f293o20k0 Sorghum methylation... 190 9e-047
gb|CW189010.1|CW189010 104_610_11173740_116_37100_046 Sorgh... 52 5e-005
gb|BZ344845.1|BZ344845 hr41a11.b1 WGS-SbicolorF (JM107 adap... 46 0.003
gb|CL177810.1|CL177810 104_385_10894096_148_31913_160 Sorgh... 46 0.003
gb|CW096735.1|CW096735 104_462_11002061_148_34354_023 Sorgh... 46 0.003
gb|CW242458.1|CW242458 104_702_11219353_148_37564_013 Sorgh... 46 0.003
gb|CW262000.1|CW262000 104_729_11229815_116_35207_090 Sorgh... 46 0.003
gb|CW331294.1|CW331294 104_828_11480829_116_36023_087 Sorgh... 46 0.003
gb|CW331295.1|CW331295 104_828_11480829_148_36024_087 Sorgh... 46 0.003
gb|CW359781.1|CW359781 fsbb001f027j01f0 Sorghum methylation... 46 0.003
gb|CW399801.1|CW399801 fsbb001f089m16f0 Sorghum methylation... 46 0.003
gb|AW671300.1|AW671300 LG1_333_H04.b1_A002 Light Grown 1 (L... 46 0.003
gb|BZ412863.1|BZ412863 122c5_ctg14 Subclones from BAC clone... 44 0.013
gb|BZ691059.1|BZ691059 SP__Ba0001M17.r SP__Ba Sorghum propi... 44 0.013
gb|BZ693741.1|BZ693741 SP__Ba0038J04.r SP__Ba Sorghum propi... 44 0.013
gb|CW044126.1|CW044126 104_280_10508776_114_30267 Sorghum m... 44 0.013
gb|CW045681.1|CW045681 104_282_10509718_115_30226 Sorghum m... 44 0.013
gb|CW068824.1|CW068824 104_317_10525327_115_30116 Sorghum m... 44 0.013
gb|CW123601.1|CW123601 104_503_11111303_148_34691_096 Sorgh... 44 0.013
gb|CW238141.1|CW238141 104_694_11216564_116_37394_066 Sorgh... 44 0.013
gb|CW238142.1|CW238142 104_694_11216564_148_37399_066 Sorgh... 44 0.013
gb|CW255698.1|CW255698 104_720_11226380_148_35137_074 Sorgh... 44 0.013
gb|CW285312.1|CW285312 104_762_11410264_116_35504_056 Sorgh... 44 0.013
gb|CW285313.1|CW285313 104_762_11410264_148_35500_056 Sorgh... 44 0.013
gb|CW326354.1|CW326354 104_821_11478173_116_36066_021 Sorgh... 44 0.013
gb|CW326355.1|CW326355 104_821_11478173_148_36067_021 Sorgh... 44 0.013
gb|CW363787.1|CW363787 fsbb001f035i20f0 Sorghum methylation... 44 0.013
gb|CW380156.1|CW380156 fsbb001f059n02f0 Sorghum methylation... 44 0.013
gb|CW399802.1|CW399802 fsbb001f089m16k0 Sorghum methylation... 44 0.013
gb|CW433407.1|CW433407 fsbb001f148j18f0 Sorghum methylation... 44 0.013
gb|CW439584.1|CW439584 fsbb001f157m21f0 Sorghum methylation... 44 0.013
gb|CW439585.1|CW439585 fsbb001f157m21k0 Sorghum methylation... 44 0.013
gb|CW478288.1|CW478288 fsbb001f236b17f0 Sorghum methylation... 44 0.013
gb|CW784640.1|CW784640 SP__Ba0001M17.r SP__Ba Sorghum propi... 44 0.013
gb|CW787769.1|CW787769 SP__Ba0038J04.r SP__Ba Sorghum propi... 44 0.013
gb|CW496616.1|CW496616 fsbb001f288p07f0 Sorghum methylation... 42 0.052
gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone ... 42 0.052
gb|AF218263.1|AF218263 AF218263 Sorghum bicolor DNA Sorghum... 40 0.21
gb|CL701101.1|CL701101 SP__Ba0069A09.f SP__Ba Sorghum propi... 40 0.21
gb|CL702269.1|CL702269 SP__Ba0082P02.f SP__Ba Sorghum propi... 40 0.21
gb|CW064960.1|CW064960 104_311_10522866_114_30122 Sorghum m... 40 0.21
gb|CW167758.1|CW167758 104_577_11153773_116_36491_061 Sorgh... 40 0.21
gb|CW325626.1|CW325626 104_820_11477788_148_35931_006 Sorgh... 40 0.21
gb|CW350020.1|CW350020 fsbb001f011c05k0 Sorghum methylation... 40 0.21
gb|CW379400.1|CW379400 fsbb001f058k12k0 Sorghum methylation... 40 0.21
gb|CW403232.1|CW403232 fsbb001f094n14f0 Sorghum methylation... 40 0.21
gb|CW501829.1|CW501829 fsbb001f297n20k0 Sorghum methylation... 40 0.21
>gb|CX622684.1|CX622684 GABR1_65_H12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 3', mRNA sequence
Length = 802
Score = 557 bits (281), Expect = e-157
Identities = 383/417 (91%)
Strand = Plus / Plus
Query: 1 tatgggtgtcccaactattggatgctacactttttcaaggaatctagcggcgccatcctc 60
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct: 207 tatggatgtcccaactattggatgctacacttcttcaaggaatctagtggcgccaccctt 266
Query: 61 catcctacagccattcaggtctccagctacgatcagctggttgcgtctgccatcacttgg 120
|||||||||||||| ||| |||||| ||| ||||||||| ||||||||||||||||||||
Sbjct: 267 catcctacagccatccagatctccaactatgatcagctgcttgcgtctgccatcacttgg 326
Query: 121 cagaacgctaaagacaagagcacttacctcaggataaaggtggtgaatttcggcaaccaa 180
||||| ||||| |||| |||||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 327 cagaatgctaaggacaggagcacttacctcagggtaaaggtggtcaattttggcaaccaa 386
Query: 181 gctgtggatctgaacatatccgttgcggaactggccaccggcgtcaagaagtctggatcg 240
||||||||||| ||||||||| ||||||||||| |||| ||| |||||||||||||||||
Sbjct: 387 gctgtggatctcaacatatccattgcggaactgcccactggcatcaagaagtctggatcg 446
Query: 241 aagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagccagag 300
|| |||| |||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 447 aaacagatggttctaacatccagcagcccgcttgacgagaactccttccagcagccagag 506
Query: 301 aaggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtg 360
||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct: 507 aaggtggtgccagtgttgagcccaatggtgaacgtggggcagcagatgggcgcgtccgtg 566
Query: 361 gggccgtactccctcacctcatttgacctgctgctggagccgagcaagcatgacagc 417
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 567 gggccctactccctcacctcgtttgatctgctgctggagccgagcaagcatgacagc 623
>gb|CW040084.1|CW040084 104_273_10505880_114_30266 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505880, DNA
sequence
Length = 647
Score = 224 bits (113), Expect = 7e-057
Identities = 149/161 (92%)
Strand = Plus / Plus
Query: 1 tatgggtgtcccaactattggatgctacactttttcaaggaatctagcggcgccatcctc 60
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct: 34 tatgggtgtcccaactattggatgctacacttcttcaaggaatctagtggcgccaccctt 93
Query: 61 catcctacagccattcaggtctccagctacgatcagctggttgcgtctgccatcacttgg 120
|||||||||||||| ||| |||||| ||| ||||||||| ||||||||||||||||||||
Sbjct: 94 catcctacagccatccagatctccaactatgatcagctgcttgcgtctgccatcacttgg 153
Query: 121 cagaacgctaaagacaagagcacttacctcaggataaaggt 161
||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 154 cagaatgctaaggacaggagcacttacctcaggataaaggt 194
Score = 198 bits (100), Expect = 4e-049
Identities = 136/148 (91%)
Strand = Plus / Plus
Query: 158 aggtggtgaatttcggcaaccaagctgtggatctgaacatatccgttgcggaactggcca 217
||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct: 292 aggtggtcaattttggcaaccaagctgtggatctcaacatatccattgcggaactgccca 351
Query: 218 ccggcgtcaagaagtctggatcgaagcagacggttctgacgtccagcagtccgcttgacg 277
| ||| ||||||||||||||||||| |||| |||||| || |||||||| ||||||||||
Sbjct: 352 ctggcatcaagaagtctggatcgaaacagatggttctaacatccagcagcccgcttgacg 411
Query: 278 agaactccttccagcagccagagaaggt 305
||||||||||||||||||||||||||||
Sbjct: 412 agaactccttccagcagccagagaaggt 439
Score = 107 bits (54), Expect = 1e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 302 aggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtgg 361
|||||| |||||||| ||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct: 570 aggtggtgccagtgttgagcccaatggtgaacgtggggcagcagatgggcgcgtccgtgg 629
Query: 362 ggccgtactccctcacct 379
|||| |||||||||||||
Sbjct: 630 ggccctactccctcacct 647
>gb|CW499260.1|CW499260 fsbb001f293o20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293o20, DNA
sequence
Length = 731
Score = 224 bits (113), Expect = 7e-057
Identities = 149/161 (92%)
Strand = Plus / Plus
Query: 1 tatgggtgtcccaactattggatgctacactttttcaaggaatctagcggcgccatcctc 60
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct: 411 tatgggtgtcccaactattggatgctacacttcttcaaggaatctagtggcgccaccctt 470
Query: 61 catcctacagccattcaggtctccagctacgatcagctggttgcgtctgccatcacttgg 120
|||||||||||||| ||| |||||| ||| ||||||||| ||||||||||||||||||||
Sbjct: 471 catcctacagccatccagatctccaactatgatcagctgcttgcgtctgccatcacttgg 530
Query: 121 cagaacgctaaagacaagagcacttacctcaggataaaggt 161
||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 531 cagaatgctaaggacaggagcacttacctcaggataaaggt 571
Score = 73.8 bits (37), Expect = 1e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 166 aatttcggcaaccaagctgtggatctgaacatatccgttgcggaactggccac 218
||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 678 aattttggcaaccaagctgtggatctcaacatatccattgcggaactgcccac 730
>gb|CW499261.1|CW499261 fsbb001f293o20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293o20, DNA
sequence
Length = 713
Score = 190 bits (96), Expect = 9e-047
Identities = 135/148 (91%)
Strand = Plus / Minus
Query: 158 aggtggtgaatttcggcaaccaagctgtggatctgaacatatccgttgcggaactggcca 217
||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct: 678 aggtggtcaattttggcaaccaagctgtggatctcaacatatccattgcggaactgccca 619
Query: 218 ccggcgtcaagaagtctggatcgaagcagacggttctgacgtccagcagtccgcttgacg 277
| ||| ||||||||||||||||||| |||| | |||| || |||||||| ||||||||||
Sbjct: 618 ctggcatcaagaagtctggatcgaaacagatgtttctaacatccagcagcccgcttgacg 559
Query: 278 agaactccttccagcagccagagaaggt 305
||||||||||||||||||||||||||||
Sbjct: 558 agaactccttccagcagccagagaaggt 531
Score = 167 bits (84), Expect = 1e-039
Identities = 108/116 (93%)
Strand = Plus / Minus
Query: 302 aggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtgg 361
|||||| |||||||| ||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct: 400 aggtggtgccagtgttgagcccaatggtgaacgtggggcagcagatgggcgcgtccgtgg 341
Query: 362 ggccgtactccctcacctcatttgacctgctgctggagccgagcaagcatgacagc 417
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 340 ggccctactccctcacctcgtttgatctgctgctggagccgagcaagcatgacagc 285
>gb|CW189010.1|CW189010 104_610_11173740_116_37100_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173740, DNA
sequence
Length = 682
Score = 52.0 bits (26), Expect = 5e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||||||||||||||||||||
Sbjct: 64 agttcaacctaaaagcttaagctgat 39
>gb|BZ344845.1|BZ344845 hr41a11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr41a11 5', DNA sequence
Length = 543
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 368 caaccagttcaacccaaaagcttaagctgat 398
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 176 caaccagttcaacccaaaagcttaagctgat 206
>gb|CL177810.1|CL177810 104_385_10894096_148_31913_160 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894096, DNA
sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 94 caaccagttcaacccaaaagcttaagctgat 64
>gb|CW096735.1|CW096735 104_462_11002061_148_34354_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002061, DNA
sequence
Length = 590
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 583 caaccagttcaacccaaaagcttaagctgat 553
>gb|CW242458.1|CW242458 104_702_11219353_148_37564_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219353, DNA
sequence
Length = 741
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 177 caaccagttcaacccaaaagcttaagctgat 147
>gb|CW262000.1|CW262000 104_729_11229815_116_35207_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229815, DNA
sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 497 caaccagttcaacccaaaagcttaagctgat 467
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 305 caaccagttcaacccaaaagcttaagctgat 275
>gb|CW331294.1|CW331294 104_828_11480829_116_36023_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480829, DNA
sequence
Length = 736
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 611 caaccagttcaacccaaaagcttaagctgat 581
>gb|CW331295.1|CW331295 104_828_11480829_148_36024_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480829, DNA
sequence
Length = 630
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 195 caaccagttcaacccaaaagcttaagctgat 225
>gb|CW359781.1|CW359781 fsbb001f027j01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f027j01, DNA
sequence
Length = 612
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||||||||||||| |||| |||||||||||
Sbjct: 88 caacaagttcaacccaaaaacttaagctgat 58
>gb|CW399801.1|CW399801 fsbb001f089m16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f089m16, DNA
sequence
Length = 671
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 615 caaccagttcaacccaaaagcttaagctgat 585
>gb|AW671300.1|AW671300 LG1_333_H04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 516
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 510 caacaagttcaacctaaaagcttaagctgat 540
|||| ||||||||| ||||||||||||||||
Sbjct: 122 caaccagttcaacccaaaagcttaagctgat 152
>gb|BZ412863.1|BZ412863 122c5_ctg14 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 122c5, DNA
sequence
Length = 470
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 268 agttcaacccaaaagcttaagctgat 243
>gb|BZ691059.1|BZ691059 SP__Ba0001M17.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0001M17 3', DNA sequence
Length = 1224
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 827 agttcaacccaaaagcttaagctgat 852
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 627 agttcaacccaaaagcttaagctgat 652
>gb|BZ693741.1|BZ693741 SP__Ba0038J04.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0038J04 3', DNA sequence
Length = 1207
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 762 agttcaacccaaaagcttaagctgat 737
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 562 agttcaacccaaaagcttaagctgat 537
>gb|CW044126.1|CW044126 104_280_10508776_114_30267 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508776, DNA
sequence
Length = 610
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 505 agttcaacccaaaagcttaagctgat 480
>gb|CW045681.1|CW045681 104_282_10509718_115_30226 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509718, DNA
sequence
Length = 554
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 107 agttcaacccaaaagcttaagctgat 82
>gb|CW068824.1|CW068824 104_317_10525327_115_30116 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525327, DNA
sequence
Length = 558
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 397 agttcaacccaaaagcttaagctgat 372
>gb|CW123601.1|CW123601 104_503_11111303_148_34691_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111303, DNA
sequence
Length = 578
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 491 agttcaacccaaaagcttaagctgat 466
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 292 agttcaacccaaaagcttaagctgat 267
>gb|CW238141.1|CW238141 104_694_11216564_116_37394_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216564, DNA
sequence
Length = 746
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 325 agttcaacccaaaagcttaagctgat 350
>gb|CW238142.1|CW238142 104_694_11216564_148_37399_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216564, DNA
sequence
Length = 735
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 498 agttcaacccaaaagcttaagctgat 473
>gb|CW255698.1|CW255698 104_720_11226380_148_35137_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226380, DNA
sequence
Length = 537
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 132 agttcaacccaaaagcttaagctgat 107
>gb|CW285312.1|CW285312 104_762_11410264_116_35504_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410264, DNA
sequence
Length = 712
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 641 agttcaacccaaaagcttaagctgat 666
>gb|CW285313.1|CW285313 104_762_11410264_148_35500_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410264, DNA
sequence
Length = 670
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 215 agttcaacccaaaagcttaagctgat 190
>gb|CW326354.1|CW326354 104_821_11478173_116_36066_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478173, DNA
sequence
Length = 761
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 598 agttcaacccaaaagcttaagctgat 573
>gb|CW326355.1|CW326355 104_821_11478173_148_36067_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478173, DNA
sequence
Length = 683
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 216 agttcaacccaaaagcttaagctgat 241
>gb|CW363787.1|CW363787 fsbb001f035i20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035i20, DNA
sequence
Length = 712
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 200 agttcaacccaaaagcttaagctgat 175
>gb|CW380156.1|CW380156 fsbb001f059n02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059n02, DNA
sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 21 agttcaacccaaaagcttaagctgat 46
>gb|CW399802.1|CW399802 fsbb001f089m16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f089m16, DNA
sequence
Length = 653
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 506 agttcaacccaaaagcttaagctgat 531
>gb|CW433407.1|CW433407 fsbb001f148j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148j18, DNA
sequence
Length = 793
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 24 agttcaacccaaaagcttaagctgat 49
>gb|CW439584.1|CW439584 fsbb001f157m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157m21, DNA
sequence
Length = 756
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 567 agttcaacccaaaagcttaagctgat 542
>gb|CW439585.1|CW439585 fsbb001f157m21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157m21, DNA
sequence
Length = 716
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 266 agttcaacccaaaagcttaagctgat 291
>gb|CW478288.1|CW478288 fsbb001f236b17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236b17, DNA
sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 62 agttcaacccaaaagcttaagctgat 37
>gb|CW784640.1|CW784640 SP__Ba0001M17.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0001M17 3', DNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 675 agttcaacccaaaagcttaagctgat 700
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 475 agttcaacccaaaagcttaagctgat 500
>gb|CW787769.1|CW787769 SP__Ba0038J04.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0038J04 3', DNA sequence
Length = 704
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 515 agttcaacctaaaagcttaagctgat 540
||||||||| ||||||||||||||||
Sbjct: 557 agttcaacccaaaagcttaagctgat 532
>gb|CW496616.1|CW496616 fsbb001f288p07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288p07, DNA
sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.052
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 510 caacaagttcaacctaaaagcttaagctgatag 542
|||| ||||||||| ||||||||||||| ||||
Sbjct: 64 caaccagttcaacccaaaagcttaagcttatag 96
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete
sequence
Length = 120132
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 512 acaagttcaacctaaaagcttaagctgat 540
|||||||||| | ||||||||||||||||
Sbjct: 20272 acaagttcaaaccaaaagcttaagctgat 20244
>gb|AF218263.1|AF218263 AF218263 Sorghum bicolor DNA Sorghum bicolor genomic clone
pBS-TSF2, DNA sequence
Length = 772
Score = 40.1 bits (20), Expect = 0.21
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 510 caacaagttcaacctaaaagcttaagct 537
|||| ||||||||| |||||||||||||
Sbjct: 440 caaccagttcaacccaaaagcttaagct 413
>gb|CL701101.1|CL701101 SP__Ba0069A09.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0069A09 5', DNA sequence
Length = 323
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 517 ttcaacctaaaagcttaagctgat 540
||||||| ||||||||||||||||
Sbjct: 284 ttcaacccaaaagcttaagctgat 307
>gb|CL702269.1|CL702269 SP__Ba0082P02.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0082P02 5', DNA sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 517 ttcaacctaaaagcttaagctgat 540
||||||| ||||||||||||||||
Sbjct: 372 ttcaacccaaaagcttaagctgat 395
>gb|CW064960.1|CW064960 104_311_10522866_114_30122 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522866, DNA
sequence
Length = 371
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 386 acctgctgctggagccgagcaagc 409
|||||||||||||||| |||||||
Sbjct: 21 acctgctgctggagcctagcaagc 44
>gb|CW167758.1|CW167758 104_577_11153773_116_36491_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153773, DNA
sequence
Length = 763
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 517 ttcaacctaaaagcttaagctgat 540
||||||| ||||||||||||||||
Sbjct: 21 ttcaacccaaaagcttaagctgat 44
>gb|CW325626.1|CW325626 104_820_11477788_148_35931_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477788, DNA
sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 517 ttcaacctaaaagcttaagctgat 540
||||||| ||||||||||||||||
Sbjct: 76 ttcaacccaaaagcttaagctgat 99
>gb|CW350020.1|CW350020 fsbb001f011c05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f011c05, DNA
sequence
Length = 748
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 517 ttcaacctaaaagcttaagctgat 540
||||||| ||||||||||||||||
Sbjct: 367 ttcaacccaaaagcttaagctgat 390
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 517 ttcaacctaaaagcttaagctgat 540
||||||| ||||||||||||||||
Sbjct: 168 ttcaacccaaaagcttaagctgat 191
>gb|CW379400.1|CW379400 fsbb001f058k12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f058k12, DNA
sequence
Length = 858
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 386 acctgctgctggagccgagcaagc 409
|||||||||||||||| |||||||
Sbjct: 296 acctgctgctggagcctagcaagc 273
>gb|CW403232.1|CW403232 fsbb001f094n14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f094n14, DNA
sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 517 ttcaacctaaaagcttaagctgat 540
||||||| ||||||||||||||||
Sbjct: 166 ttcaacccaaaagcttaagctgat 143
>gb|CW501829.1|CW501829 fsbb001f297n20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f297n20, DNA
sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 517 ttcaacctaaaagcttaagctgat 540
||||||| ||||||||||||||||
Sbjct: 641 ttcaacccaaaagcttaagctgat 664
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,525
Number of Sequences: 832831
Number of extensions: 131525
Number of successful extensions: 35484
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35386
Number of HSP's gapped (non-prelim): 98
length of query: 544
length of database: 491,359,669
effective HSP length: 19
effective length of query: 525
effective length of database: 475,535,880
effective search space: 249656337000
effective search space used: 249656337000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)