BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2945733.2.1
(885 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX610478.1|CX610478 ANR1_19_A11.b1_A002 Anaerobic roots ... 797 0.0
gb|BG103594.1|BG103594 RHIZ2_38_D12.g1_A003 Rhizome2 (RHIZ2... 791 0.0
gb|CD223566.1|CD223566 CCC1_28_C07.g1_A007 Callus culture/c... 789 0.0
gb|CD463318.1|CD463318 ETH1_43_H02.g1_A002 Ethylene-treated... 789 0.0
gb|CX606291.1|CX606291 ANR1_2_E10.b1_A002 Anaerobic roots S... 789 0.0
gb|CX606382.1|CX606382 ANR1_2_E10.g1_A002 Anaerobic roots S... 789 0.0
gb|CX606699.1|CX606699 ANR1_4_B03.g1_A002 Anaerobic roots S... 789 0.0
gb|CX610560.1|CX610560 ANR1_19_A11.g1_A002 Anaerobic roots ... 789 0.0
gb|CD220310.1|CD220310 CCC1_66_H05.g1_A007 Callus culture/c... 781 0.0
gb|CN138876.1|CN138876 OX1_14_C12.g1_A002 Oxidatively-stres... 781 0.0
gb|CX608631.1|CX608631 ANR1_39_F09.g1_A002 Anaerobic roots ... 781 0.0
gb|CX611215.1|CX611215 ANR1_23_G04.b1_A002 Anaerobic roots ... 765 0.0
gb|CD223463.1|CD223463 CCC1_28_C07.b1_A007 Callus culture/c... 759 0.0
gb|CX611291.1|CX611291 ANR1_23_G04.g1_A002 Anaerobic roots ... 757 0.0
gb|CN138812.1|CN138812 OX1_14_C12.b1_A002 Oxidatively-stres... 737 0.0
gb|CX608744.1|CX608744 ANR1_40_A10.g1_A002 Anaerobic roots ... 708 0.0
gb|CN130179.1|CN130179 RHOH1_39_F12.g1_A002 Acid- and alkal... 595 e-168
gb|CD428286.1|CD428286 ETH1_28_F01.g1_A002 Ethylene-treated... 571 e-161
gb|CX608662.1|CX608662 ANR1_40_A10.b1_A002 Anaerobic roots ... 571 e-161
gb|CD463250.1|CD463250 ETH1_43_H02.b1_A002 Ethylene-treated... 563 e-158
gb|BG103937.1|BG103937 RHIZ2_38_D12.b1_A003 Rhizome2 (RHIZ2... 480 e-133
gb|BG053612.1|BG053612 RHIZ2_11_E09.g1_A003 Rhizome2 (RHIZ2... 470 e-130
gb|CX608283.1|CX608283 ANR1_37_E08.g1_A002 Anaerobic roots ... 402 e-110
gb|BG053912.1|BG053912 RHIZ2_11_E09.b1_A003 Rhizome2 (RHIZ2... 391 e-107
gb|CD224993.1|CD224993 CCC1_37_A03.g1_A007 Callus culture/c... 383 e-104
gb|CX608192.1|CX608192 ANR1_37_E08.b1_A002 Anaerobic roots ... 367 1e-099
gb|CD224885.1|CD224885 CCC1_37_A03.b1_A007 Callus culture/c... 236 3e-060
gb|AI724159.1|AI724159 RHIZ1_7_F07.y2_A001 Rhizome1 (RHIZ1)... 232 4e-059
gb|CW091840.1|CW091840 104_454_10998798_114_33039_031 Sorgh... 222 4e-056
gb|AW678310.1|AW678310 WS1_14_F12.g1_A002 Water-stressed 1 ... 214 1e-053
gb|CW289759.1|CW289759 104_768_11412650_116_35548_003 Sorgh... 196 2e-048
gb|CW289760.1|CW289760 104_768_11412650_148_35552_003 Sorgh... 196 2e-048
gb|CW025496.1|CW025496 104_227_10488227_116_30503 Sorghum m... 192 4e-047
gb|CW091841.1|CW091841 104_454_10998798_116_33043_031 Sorgh... 192 4e-047
gb|AW678251.1|AW678251 WS1_14_F12.b1_A002 Water-stressed 1 ... 133 3e-029
gb|AI723975.1|AI723975 RHIZ1_25_C08.y1_A001 Rhizome1 (RHIZ1... 62 9e-008
gb|CD428958.1|CD428958 ETH1_1_H03.g1_A002 Ethylene-treated ... 62 9e-008
gb|CD429486.1|CD429486 ETH1_4_H06.g1_A002 Ethylene-treated ... 62 9e-008
gb|CN127771.1|CN127771 RHOH1_25_A10.b1_A002 Acid- and alkal... 62 9e-008
gb|CN127853.1|CN127853 RHOH1_25_A10.g1_A002 Acid- and alkal... 62 9e-008
gb|CX608812.1|CX608812 ANR1_40_H05.g1_A002 Anaerobic roots ... 62 9e-008
gb|CX611821.1|CX611821 ANR1_26_H11.g1_A002 Anaerobic roots ... 62 9e-008
gb|CX619311.1|CX619311 GABR1_44_E12.g1_A002 GA- or brassino... 62 9e-008
gb|CL174039.1|CL174039 104_378_10891292_116_31771_044 Sorgh... 52 9e-005
gb|CW030499.1|CW030499 104_258_10500274_116_30404 Sorghum m... 52 9e-005
gb|CW422496.1|CW422496 fsbb001f131m23k0 Sorghum methylation... 52 9e-005
gb|CD429347.1|CD429347 ETH1_4_H06.b1_A002 Ethylene-treated ... 52 9e-005
gb|CN132491.1|CN132491 OX1_6_B04.g1_A002 Oxidatively-stress... 52 9e-005
gb|CW099003.1|CW099003 104_465_11003316_116_34375_036 Sorgh... 50 4e-004
gb|CW411986.1|CW411986 fsbb001f107g13f0 Sorghum methylation... 50 4e-004
gb|CD428909.1|CD428909 ETH1_1_H03.b1_A002 Ethylene-treated ... 46 0.005
gb|CW166663.1|CW166663 104_575_11153175_116_36768_056 Sorgh... 44 0.022
gb|CW166665.1|CW166665 104_575_11153176_116_36765_056 Sorgh... 44 0.022
gb|CW327103.1|CW327103 104_822_11478566_148_35965_053 Sorgh... 44 0.022
gb|CW493923.1|CW493923 fsbb001f284o21k0 Sorghum methylation... 44 0.022
gb|CW374817.1|CW374817 fsbb001f051n24k0 Sorghum methylation... 40 0.34
gb|BG356723.1|BG356723 OV2_9_B09.g1_A002 Ovary 2 (OV2) Sorg... 40 0.34
gb|CD463061.1|CD463061 ETH1_42_G10.b1_A002 Ethylene-treated... 40 0.34
gb|CD463173.1|CD463173 ETH1_42_G10.g1_A002 Ethylene-treated... 40 0.34
gb|CX619225.1|CX619225 GABR1_44_E12.b1_A002 GA- or brassino... 40 0.34
>gb|CX610478.1|CX610478 ANR1_19_A11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_19_A11_A002 3', mRNA sequence
Length = 759
Score = 797 bits (402), Expect = 0.0
Identities = 477/502 (95%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct: 54 ggcatggcgctcgcggaggggaacgacggcgcggtcgtcttcagcgaggagcaggaggcg 113
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 114 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 173
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 233
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 234 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 293
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 294 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 353
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 354 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 413
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 473
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 474 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 533
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 534 gagatgaaacctgatgcctagt 555
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 635 cgtgtgatcttgcactttaccagtttctctctggag 670
>gb|BG103594.1|BG103594 RHIZ2_38_D12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 661
Score = 791 bits (399), Expect = 0.0
Identities = 476/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || ||||||| || |||||| ||||||||||| |||||
Sbjct: 8 ggcatggcgctcgcggaggggaacaacggcgctgtcgtcttcagcgaggagcagnaggcg 67
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 68 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 127
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 187
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 188 tccgacgtgccgctggagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 247
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 248 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcaccgtgagggagacc 307
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 308 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 367
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 427
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 428 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 487
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 488 gagatgaaacctgatgcctagt 509
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| | |||||| |||||||||||||
Sbjct: 588 cgtgtgatcttgcacattagcagtttctctctggag 623
>gb|CD223566.1|CD223566 CCC1_28_C07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_28_C07_A007 5', mRNA sequence
Length = 646
Score = 789 bits (398), Expect = 0.0
Identities = 476/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 136 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 195
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 196 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 255
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 315
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 316 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 375
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 376 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 435
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 436 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 495
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 555
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 556 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 615
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 616 gagatgaaacctgatgcctagt 637
>gb|CD463318.1|CD463318 ETH1_43_H02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_43_H02_A002 5', mRNA sequence
Length = 734
Score = 789 bits (398), Expect = 0.0
Identities = 476/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 134 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 193
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 194 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 253
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 313
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 314 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 373
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 374 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 433
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 434 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 493
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 553
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 554 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 613
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 614 gagatgaaacctgatgcctagt 635
>gb|CX606291.1|CX606291 ANR1_2_E10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_E10_A002 3', mRNA sequence
Length = 732
Score = 789 bits (398), Expect = 0.0
Identities = 476/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 41 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 100
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 101 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 160
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 220
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 221 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 280
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 281 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 340
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 341 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 400
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 460
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 461 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 520
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 521 gagatgaaacctgatgcctagt 542
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 622 cgtgtgatcttgcactttaccagtttctctctggag 657
>gb|CX606382.1|CX606382 ANR1_2_E10.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_E10_A002 5', mRNA sequence
Length = 769
Score = 789 bits (398), Expect = 0.0
Identities = 476/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 115 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 174
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 175 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 234
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 294
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 295 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 354
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 355 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 414
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 415 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 474
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 534
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 535 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 594
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 595 gagatgaaacctgatgcctagt 616
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 696 cgtgtgatcttgcactttaccagtttctctctggag 731
>gb|CX606699.1|CX606699 ANR1_4_B03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_4_B03_A002 5', mRNA sequence
Length = 821
Score = 789 bits (398), Expect = 0.0
Identities = 476/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 115 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 174
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 175 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 234
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 294
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 295 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 354
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 355 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 414
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 415 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 474
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 534
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 535 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 594
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 595 gagatgaaacctgatgcctagt 616
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 696 cgtgtgatcttgcactttaccagtttctctctggag 731
>gb|CX610560.1|CX610560 ANR1_19_A11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_19_A11_A002 5', mRNA sequence
Length = 667
Score = 789 bits (398), Expect = 0.0
Identities = 476/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct: 132 ggcatggcgctcgcggaggggaacgacggcgcggtcgtcttcagcgaggagcaggaggcg 191
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 192 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 251
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 311
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 312 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 371
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct: 372 atgacttgcgaggcggcggcgcagcttcccaaggccgggaaggtcacagtgagggagacc 431
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 432 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 491
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 551
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 552 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 611
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 612 gagatgaaacctgatgcctagt 633
>gb|CD220310.1|CD220310 CCC1_66_H05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_66_H05_A007 5', mRNA sequence
Length = 656
Score = 781 bits (394), Expect = 0.0
Identities = 475/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 139 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 198
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 199 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 258
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 318
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 319 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 378
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 379 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 438
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 439 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 498
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 558
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||||
Sbjct: 559 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccgtcaagcaa 618
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 619 gagatgaaacctgatgcctagt 640
>gb|CN138876.1|CN138876 OX1_14_C12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_C12_A002 5', mRNA sequence
Length = 805
Score = 781 bits (394), Expect = 0.0
Identities = 475/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 114 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 173
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 174 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 233
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 293
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 294 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 353
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 354 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 413
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||
Sbjct: 414 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcaaatggccactttgag 473
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 533
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 534 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 593
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 594 gagatgaaacctgatgcctagt 615
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 695 cgtgtgatcttgcactttaccagtttctctctggag 730
>gb|CX608631.1|CX608631 ANR1_39_F09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_F09_A002 5', mRNA sequence
Length = 689
Score = 781 bits (394), Expect = 0.0
Identities = 475/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 128 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 187
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 188 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 247
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 307
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 308 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 367
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 368 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 427
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 428 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 487
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 547
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 548 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 607
Query: 649 gagatgaagcccgatgcctagt 670
||||||| || ||||||||||
Sbjct: 608 gagatgacacctgatgcctagt 629
>gb|CX611215.1|CX611215 ANR1_23_G04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_23_G04_A002 3', mRNA sequence
Length = 720
Score = 765 bits (386), Expect = 0.0
Identities = 473/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| | |||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 15 ggcatggcgcccgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 74
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 75 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 134
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgat 194
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 195 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 254
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 255 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 314
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
|||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |||
Sbjct: 315 acgctcaagaggctgggcgccacgcactcgaagtacggcgtcgcagatggccactttgag 374
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 434
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 435 ctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 494
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 495 gagatgaaacctgatgcctagt 516
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 596 cgtgtgatcttgcactttaccagtttctctctggag 631
>gb|CD223463.1|CD223463 CCC1_28_C07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_28_C07_A007 3', mRNA sequence
Length = 660
Score = 759 bits (383), Expect = 0.0
Identities = 440/459 (95%)
Strand = Plus / Plus
Query: 212 gcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggacgccgcca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4 gcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggactccgcca 63
Query: 272 acctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgt 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 acctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgt 123
Query: 332 tctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaagacgcacg 391
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct: 124 tctcgttcctgcgcgactccgacgtgccgctagagaagaaccctaagctcaagacgcatg 183
Query: 392 ccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggccgggaagg 451
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 184 ccatgtccgtctttgtcatgacttgcgaggcggcggcgcagcttcgcaaggccgggaagg 243
Query: 452 tcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtacggcgtcg 511
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 244 tcacagtgagggagaccacgctcaagaggctgggcgccacgcacttgaagtacggcgtcg 303
Query: 512 cagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggaggcgctcc 571
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagatggccactttgaggtgacggggttcgcgctgcttgagacgatcaaggaggcgctcc 363
Query: 572 ccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctacagccagctgg 631
|||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct: 364 ccgctgacatgtggagcctcgagatgaagaaagcctggagcgaggcttacaaccagctgg 423
Query: 632 tggcggccatcaagcgggagatgaagcccgatgcctagt 670
||||||||||||||| |||||||| || ||||||||||
Sbjct: 424 tggcggccatcaagcaagagatgaaacctgatgcctagt 462
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 542 cgtgtgatcttgcactttaccagtttctctctggag 577
>gb|CX611291.1|CX611291 ANR1_23_G04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_23_G04_A002 5', mRNA sequence
Length = 779
Score = 757 bits (382), Expect = 0.0
Identities = 472/502 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| | |||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 133 ggcatggcgcccgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 192
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 193 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 252
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 312
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 313 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 372
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 373 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 432
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
|||||||||||||||||||||||||||| || |||||||||| ||||||| ||||| |||
Sbjct: 433 acgctcaagaggctgggcgccacgcactcgaagtacggcgtcacagatggccactttgag 492
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 552
Query: 589 ctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgg 648
||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 553 ctctagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaa 612
Query: 649 gagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 613 gagatgaaacctgatgcctagt 634
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 714 cgtgtgatcttgcactttaccagtttctctctggag 749
>gb|CN138812.1|CN138812 OX1_14_C12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_C12_A002 3', mRNA sequence
Length = 642
Score = 737 bits (372), Expect = 0.0
Identities = 435/456 (95%)
Strand = Plus / Plus
Query: 215 aggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacc 274
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 aggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacc 60
Query: 275 tgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttct 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttct 120
Query: 335 cgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaagacgcacgcca 394
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 121 cgttcctgcgcgattccgacgtgccgctagagaagaaccctaagctcaagacgcatgcca 180
Query: 395 tgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtca 454
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 181 tgtccgtctttgtcatgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtca 240
Query: 455 ccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcag 514
| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 cagtgagggagcccacgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcag 300
Query: 515 atggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccg 574
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atggccactttgaggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccg 360
Query: 575 ctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctacagccagctggtgg 634
||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct: 361 ctgacatgtggagcctcgagatgaagaaagcctggagcgaggcttacaaccagctggtgg 420
Query: 635 cggccatcaagcgggagatgaagcccgatgcctagt 670
|||||||||||| |||||||| || ||||||||||
Sbjct: 421 cggccatcaagcaagagatgaaacctgatgcctagt 456
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 536 cgtgtgatcttgcactttaccagtttctctctggag 571
>gb|CX608744.1|CX608744 ANR1_40_A10.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_40_A10_A002 5', mRNA sequence
Length = 567
Score = 708 bits (357), Expect = 0.0
Identities = 417/437 (95%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 131 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 190
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 191 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcctc 250
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 310
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 311 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 370
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 371 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 430
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 431 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgag 490
Query: 529 gtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 588
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtgacggggttcgcgccgcttgagacgatcaaggaggcgctccccgctgacatgtggagc 550
Query: 589 ctcgagatgaagaaagc 605
|||||||||||||||||
Sbjct: 551 ctcgagatgaagaaagc 567
>gb|CN130179.1|CN130179 RHOH1_39_F12.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_39_F12_A002 5', mRNA sequence
Length = 510
Score = 595 bits (300), Expect = e-168
Identities = 360/380 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 131 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 190
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 191 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 250
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 310
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 311 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 370
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 371 atgacttgcgaggcggcggcgcaacttcgcaaggccgggaaggtcacagtgagggagacc 430
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgag 528
||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||
Sbjct: 431 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcacatggccactttgag 490
Query: 529 gtgacggggttcgcgctgct 548
||||||||||||||||||||
Sbjct: 491 gtgacggggttcgcgctgct 510
>gb|CD428286.1|CD428286 ETH1_28_F01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F01_A002 5', mRNA sequence
Length = 500
Score = 571 bits (288), Expect = e-161
Identities = 339/356 (95%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 143 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 202
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 203 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 262
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 322
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 323 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 382
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagacc 468
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 383 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagacc 442
Query: 469 acgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacactt 524
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 443 acgctcaagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactt 498
>gb|CX608662.1|CX608662 ANR1_40_A10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_40_A10_A002 3', mRNA sequence
Length = 570
Score = 571 bits (288), Expect = e-161
Identities = 345/364 (94%)
Strand = Plus / Plus
Query: 307 atcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgtgccgctggag 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 atcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgtgccgctagag 60
Query: 367 aagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgacctgcgaggcggcg 426
|||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 61 aagaaccctaagctcaagacgcatgccatgtccgtctttgtcatgacttgcgaggcggcg 120
Query: 427 gcgcagctccgcaaggccgggaaggtcaccgtgagggagaccacgctcaagaggctgggc 486
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 121 gcgcagcttcgcaaggccgggaaggtcacagtgagggagaccacgctcaagaggctgggc 180
Query: 487 gccacgcacttgaggtacggcgtcgcagatggacacttcgaggtgacggggttcgcgctg 546
||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |
Sbjct: 181 gccacgcacttgaagtacggcgtcgcagatggccactttgaggtgacggggttcgcgccg 240
Query: 547 cttgagacgatcaaggaggcgctccccgctgacatgtggagcctcgagatgaagaaagcc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttgagacgatcaaggaggcgctccccgctgacatgtggagcctcgagatgaagaaagcc 300
Query: 607 tgggccgaggcctacagccagctggtggcggccatcaagcgggagatgaagcccgatgcc 666
||| |||||| |||| ||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 301 tggagcgaggcttacaaccagctggtggcggccatcaagcaagagatgaaacctgatgcc 360
Query: 667 tagt 670
||||
Sbjct: 361 tagt 364
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 444 cgtgtgatcttgcactttaccagtttctctctggag 479
>gb|CD463250.1|CD463250 ETH1_43_H02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_43_H02_A002 3', mRNA sequence
Length = 563
Score = 563 bits (284), Expect = e-158
Identities = 338/356 (94%)
Strand = Plus / Plus
Query: 315 gtcggcgaagcagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccc 374
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gtcggcgaagcagatgttctcgttcctgcgcgactccgacgtgccgctagagaagaaccc 60
Query: 375 caagctcaagacgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagct 434
|||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 61 taagctcaagacgcatgccatgtccgtctttgtcatgacttgcgaggcggcggcgcagct 120
Query: 435 ccgcaaggccgggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgca 494
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgcaaggccgggaaggtcacagtgagggagaccacgctcaagaggctgggcgccacgca 180
Query: 495 cttgaggtacggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagac 554
||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 181 cttgaagtacggcgtcgcagatggccactttgaggtgacggggttcgcgctgcttgagac 240
Query: 555 gatcaaggaggcgctccccgctgacatgtggagcctcgagatgaagaaagcctgggccga 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 gatcaaggaggcgctccccgctgacatgtggagcctcgagatgaagaaagcctggagcga 300
Query: 615 ggcctacagccagctggtggcggccatcaagcgggagatgaagcccgatgcctagt 670
||| |||| ||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 301 ggcttacaaccagctggtggcggccatcaagcaagagatgaaacctgatgcctagt 356
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 436 cgtgtgatcttgcactttaccagtttctctctggag 471
>gb|BG103937.1|BG103937 RHIZ2_38_D12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 528
Score = 480 bits (242), Expect = e-133
Identities = 284/298 (95%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || ||||||| || |||||| |||||||||||||||||
Sbjct: 231 ggcatggcgctcgcggaggggaacaacggcgctgtcgtcttcagcgaggagcaggaggcg 290
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 291 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 350
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 410
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 411 tccgacgtgccgctggagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 470
Query: 409 atgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggaga 466
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 471 atgacttgcgaggcggcggcgcagcttcgcaaggccgggaaggtcaccgtgagggaga 528
>gb|BG053612.1|BG053612 RHIZ2_11_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 513
Score = 470 bits (237), Expect = e-130
Identities = 294/313 (93%)
Strand = Plus / Plus
Query: 358 ccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgacctgc 417
||||||||||||| || |||||||||||||| |||||||||||||| |||||||| |||
Sbjct: 1 ccgctggagaagacccttaagctcaagacgcatgccatgtccgtctttgtcatgacttgc 60
Query: 418 gaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagaccacgctcaag 477
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 gaggcggcggcgcagcttcgcaaggccgggaaggtccccgtgagggagaccacgctcaag 120
Query: 478 aggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgaggtgacgggg 537
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct: 121 aggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgaggtgacgggg 180
Query: 538 ttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagcctcgagatg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagcctcgagatg 240
Query: 598 aagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgggagatgaag 657
|||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct: 241 aagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagcaagagatgaaa 300
Query: 658 cccgatgcctagt 670
|| ||||||||||
Sbjct: 301 cctgatgcctagt 313
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| | |||||| |||||||||||||
Sbjct: 392 cgtgtgatcttgcacattagcagtttctctctggag 427
>gb|CX608283.1|CX608283 ANR1_37_E08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_E08_A002 5', mRNA sequence
Length = 375
Score = 402 bits (203), Expect = e-110
Identities = 245/259 (94%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 117 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 176
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 177 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 236
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 237 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcacgac 296
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 297 tccgacgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 356
Query: 409 atgacctgcgaggcggcgg 427
||||| |||||||||||||
Sbjct: 357 atgacttgcgaggcggcgg 375
>gb|BG053912.1|BG053912 RHIZ2_11_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 478
Score = 391 bits (197), Expect = e-107
Identities = 233/245 (95%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || ||||||| || |||||| |||||||||||||||||
Sbjct: 231 ggcatggcgctcgcggaggggaacaacggcgctgtcgtcttcagcgaggagcaggaggcg 290
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 291 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 350
Query: 289 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 410
Query: 349 tccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtc 408
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 411 tccgacgtgccgctggagaagaaccctaagctcaagacgcatgccatgtccgtctttgtc 470
Query: 409 atgac 413
|||||
Sbjct: 471 atgac 475
>gb|CD224993.1|CD224993 CCC1_37_A03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_A03_A007 5', mRNA sequence
Length = 609
Score = 383 bits (193), Expect = e-104
Identities = 223/233 (95%)
Strand = Plus / Plus
Query: 297 ggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgt 408
Query: 357 gccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgacctg 416
|||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct: 409 gccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtcatgacttg 468
Query: 417 cgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagaccacgctcaa 476
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 469 cgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagaccacgctcaa 528
Query: 477 gaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgagg 529
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct: 529 gaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgagg 581
Score = 192 bits (97), Expect = 4e-047
Identities = 121/129 (93%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 85 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 144
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 145 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 204
Query: 289 ttcctcaag 297
|||||||||
Sbjct: 205 ttcctcaag 213
>gb|CX608192.1|CX608192 ANR1_37_E08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_E08_A002 3', mRNA sequence
Length = 422
Score = 367 bits (185), Expect = 1e-099
Identities = 221/233 (94%)
Strand = Plus / Plus
Query: 438 caaggccgggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcactt 497
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaggccgggaaggtcacagtgagggagaccacgctcaagaggctgggcgccacgcactt 60
Query: 498 gaggtacggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgat 557
|| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 gaagtacggcgtcgcagatggccactttgaggtgacggggttcgcgctgcttgagacgat 120
Query: 558 caaggaggcgctccccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggc 617
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 121 caaggaggcgctccccgctgacatgtggagcctcgagatgaagaaagcctggagcgaggc 180
Query: 618 ctacagccagctggtggcggccatcaagcgggagatgaagcccgatgcctagt 670
|||| ||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 181 ttacaaccagctggtggcggccatcaagcaagagatgaaacctgatgcctagt 233
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 313 cgtgtgatcttgcactttaccagtttctctctggag 348
>gb|CD224885.1|CD224885 CCC1_37_A03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_A03_A007 3', mRNA sequence
Length = 693
Score = 236 bits (119), Expect = 3e-060
Identities = 143/151 (94%)
Strand = Plus / Plus
Query: 379 ctcaagacgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgc 438
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 1 ctcaagacgcatgccatgtccgtctttgtcatgacttgcgaggcggcggcgcagcttcgc 60
Query: 439 aaggccgggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttg 498
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaggccgggaaggtcacagtgagggagaccacgctcaagaggctgggcgccacgcacttg 120
Query: 499 aggtacggcgtcgcagatggacacttcgagg 529
| |||||||||||||||||| ||||| ||||
Sbjct: 121 aagtacggcgtcgcagatggccactttgagg 151
Score = 222 bits (112), Expect = 4e-056
Identities = 136/144 (94%)
Strand = Plus / Plus
Query: 527 aggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtgga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtgga 411
Query: 587 gcctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagc 646
||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 412 gcctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagc 471
Query: 647 gggagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 472 aagagatgaaacctgatgcctagt 495
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
|||||| |||||| ||||| || |||||||||||||
Sbjct: 575 cgtgtgatcttgcactttaccagtttctctctggag 610
>gb|AI724159.1|AI724159 RHIZ1_7_F07.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 379
Score = 232 bits (117), Expect = 4e-059
Identities = 165/181 (91%)
Strand = Plus / Plus
Query: 490 acgcacttgaggtacggcgtcgcagatggacacttcgaggtgacggggttcgcgctgctt 549
|||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 1 acgcacttgaagtacggcgtcgcagacggccactttgaggtgacggggttcgcgctgctt 60
Query: 550 gagacgatcaaggaggcgctccccgctgacatgtggagcctcgagatgaagaaagcctgg 609
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 gagacgatcaaggaggcgctccccgctgacatgtggaccctcgagatgaagaaagcctgg 120
Query: 610 gccgaggcctacagccagctggtggcggccatcaagcgggagatgaagcccgatgcctag 669
|||||| |||| |||||||||| | |||||||||| || ||||| || |||||||||
Sbjct: 121 agcgaggcttacaaccagctggtgcccgccatcaagcaagaaatgaaccctgatgcctag 180
Query: 670 t 670
|
Sbjct: 181 t 181
Score = 56.0 bits (28), Expect = 6e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 725 cgtgtggtcttgcgctttagcaatttctctctggag 760
||||||||||||| |||||||| |||||||||||||
Sbjct: 260 cgtgtggtcttgctctttagcagtttctctctggag 295
>gb|CW091840.1|CW091840 104_454_10998798_114_33039_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998798, DNA
sequence
Length = 683
Score = 222 bits (112), Expect = 4e-056
Identities = 136/144 (94%)
Strand = Plus / Minus
Query: 527 aggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtgga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtgga 99
Query: 587 gcctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagc 646
||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 98 gcctcgagatgaagaaagcctggagcgaggcttacaaccagctggtggcggccatcaagc 39
Query: 647 gggagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 38 aagagatgaaacctgatgcctagt 15
Score = 188 bits (95), Expect = 6e-046
Identities = 110/115 (95%)
Strand = Plus / Minus
Query: 415 tgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagaccacgctc 474
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 473 tgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagaccacgctc 414
Query: 475 aagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgagg 529
||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct: 413 aagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgagg 359
Score = 83.8 bits (42), Expect = 3e-014
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 354 cgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatg 411
||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 683 cgtgccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtcatg 626
>gb|AW678310.1|AW678310 WS1_14_F12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 483
Score = 214 bits (108), Expect = 1e-053
Identities = 135/144 (93%)
Strand = Plus / Plus
Query: 527 aggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtgga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtgga 356
Query: 587 gcctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagc 646
||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||
Sbjct: 357 gcctcgagatgaagaaagcctggagcgaggcttgcaaccagctggtggcggccatcaagc 416
Query: 647 gggagatgaagcccgatgcctagt 670
|||||||| || ||||||||||
Sbjct: 417 aagagatgaaacctgatgcctagt 440
Score = 155 bits (78), Expect = 8e-036
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 436 cgcaaggccgggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcac 495
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cgcaaggccgggaaggtcacagtgagggagaccacgctcaagaggctgggcgccacgcac 62
Query: 496 ttgaggtacggcgtcgcagatggacacttcgagg 529
|||| |||||||||||||||||| ||||| ||||
Sbjct: 63 ttgaagtacggcgtcgcagatggccactttgagg 96
>gb|CW289759.1|CW289759 104_768_11412650_116_35548_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412650, DNA
sequence
Length = 641
Score = 196 bits (99), Expect = 2e-048
Identities = 111/115 (96%)
Strand = Plus / Minus
Query: 297 ggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgt 446
Query: 357 gccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatg 411
|||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 445 gccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtcatg 391
Score = 188 bits (95), Expect = 6e-046
Identities = 110/115 (95%)
Strand = Plus / Minus
Query: 415 tgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagaccacgctc 474
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 238 tgcgaggcggcggcgcagcttcgcaaggccgggaaggtcacagtgagggagaccacgctc 179
Query: 475 aagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgagg 529
||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct: 178 aagaggctgggcgccacgcacttgaagtacggcgtcgcagatggccactttgagg 124
>gb|CW289760.1|CW289760 104_768_11412650_148_35552_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412650, DNA
sequence
Length = 636
Score = 196 bits (99), Expect = 2e-048
Identities = 111/115 (96%)
Strand = Plus / Plus
Query: 297 ggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgt 497
Query: 357 gccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatg 411
|||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 498 gccgctagagaagaaccctaagctcaagacgcatgccatgtccgtctttgtcatg 552
Score = 192 bits (97), Expect = 4e-047
Identities = 121/129 (93%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 174 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 233
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 234 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 293
Query: 289 ttcctcaag 297
|||||||||
Sbjct: 294 ttcctcaag 302
>gb|CW025496.1|CW025496 104_227_10488227_116_30503 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488227, DNA
sequence
Length = 596
Score = 192 bits (97), Expect = 4e-047
Identities = 121/129 (93%)
Strand = Plus / Minus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 251 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 192
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 191 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 132
Query: 289 ttcctcaag 297
|||||||||
Sbjct: 131 ttcctcaag 123
>gb|CW091841.1|CW091841 104_454_10998798_116_33043_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998798, DNA
sequence
Length = 704
Score = 192 bits (97), Expect = 4e-047
Identities = 121/129 (93%)
Strand = Plus / Plus
Query: 169 ggcatggcactcgcggaggcagacgacggcgcggtggtcttcggcgaggagcaggaggcg 228
|||||||| |||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct: 492 ggcatggcgctcgcggaggggaacaacggcgcggtcgtcttcagcgaggagcaggaggcg 551
Query: 229 ctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaacctgggcctccgcttc 288
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 552 ctggtgctcaagtcgtgggccgtcatgaagaaggactccgccaacctgggcctccgcttc 611
Query: 289 ttcctcaag 297
|||||||||
Sbjct: 612 ttcctcaag 620
>gb|AW678251.1|AW678251 WS1_14_F12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 207
Score = 133 bits (67), Expect = 3e-029
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 297 ggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgt 196
Query: 357 gccgctggaga 367
|||||| ||||
Sbjct: 197 gccgctagaga 207
>gb|AI723975.1|AI723975 RHIZ1_25_C08.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 282
Score = 61.9 bits (31), Expect = 9e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 588 cctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagc 646
|||||| ||||| ||||||||| |||||| |||| ||||||||||||| |||||||||
Sbjct: 2 cctcgacatgaaaaaagcctggagcgaggcttacaaccagctggtggcgcccatcaagc 60
>gb|CD428958.1|CD428958 ETH1_1_H03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_1_H03_A002 5', mRNA sequence
Length = 542
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 286 ttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgc 345
|||||||||| | |||| |||||||||||| || |||||||||||||| |||||||||
Sbjct: 119 ttcttcctcaggatctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgc 178
Query: 346 gac 348
|||
Sbjct: 179 gac 181
Score = 40.1 bits (20), Expect = 0.34
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 351 cgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcat 410
||||| ||| |||||||| |||||||||||||| | |||||| | ||||||| ||||
Sbjct: 193 cgacgcgcccctggagaaccaccccaagctcaaggcccacgccgtcaccgtctttatcat 252
Query: 411 gacctgcgaggcggcggcgcagct 434
| | |||||| | ||| |||||||
Sbjct: 253 ggcttgcgagtccgcgacgcagct 276
>gb|CD429486.1|CD429486 ETH1_4_H06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_4_H06_A002 5', mRNA sequence
Length = 572
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 286 ttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgc 345
|||||||||| | |||| |||||||||||| || |||||||||||||| |||||||||
Sbjct: 122 ttcttcctcaggatctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgc 181
Query: 346 gac 348
|||
Sbjct: 182 gac 184
Score = 40.1 bits (20), Expect = 0.34
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 351 cgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcat 410
||||| ||| |||||||| |||||||||||||| | |||||| | ||||||| ||||
Sbjct: 196 cgacgcgcccctggagaaccaccccaagctcaaggcccacgccgtcaccgtctttatcat 255
Query: 411 gacctgcgaggcggcggcgcagct 434
| | |||||| | ||| |||||||
Sbjct: 256 ggcttgcgagtccgcgacgcagct 279
>gb|CN127771.1|CN127771 RHOH1_25_A10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_A10_A002 3', mRNA sequence
Length = 755
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 286 ttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgc 345
|||||||||| | |||| |||||||||||| || |||||||||||||| |||||||||
Sbjct: 94 ttcttcctcaggatctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgc 153
Query: 346 gac 348
|||
Sbjct: 154 gac 156
Score = 40.1 bits (20), Expect = 0.34
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 351 cgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcat 410
||||| ||| |||||||| |||||||||||||| | |||||| | ||||||| ||||
Sbjct: 168 cgacgcgcccctggagaaccaccccaagctcaaggcccacgccgtcaccgtctttatcat 227
Query: 411 gacctgcgaggcggcggcgcagct 434
| | |||||| | ||| |||||||
Sbjct: 228 ggcttgcgagtccgcgacgcagct 251
>gb|CN127853.1|CN127853 RHOH1_25_A10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_A10_A002 5', mRNA sequence
Length = 689
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 286 ttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgc 345
|||||||||| | |||| |||||||||||| || |||||||||||||| |||||||||
Sbjct: 94 ttcttcctcaggatctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgc 153
Query: 346 gac 348
|||
Sbjct: 154 gac 156
Score = 40.1 bits (20), Expect = 0.34
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 351 cgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcat 410
||||| ||| |||||||| |||||||||||||| | |||||| | ||||||| ||||
Sbjct: 168 cgacgcgcccctggagaaccaccccaagctcaaggcccacgccgtcaccgtctttatcat 227
Query: 411 gacctgcgaggcggcggcgcagct 434
| | |||||| | ||| |||||||
Sbjct: 228 ggcttgcgagtccgcgacgcagct 251
>gb|CX608812.1|CX608812 ANR1_40_H05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_40_H05_A002 5', mRNA sequence
Length = 492
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 286 ttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgc 345
|||||||||| | |||| |||||||||||| || |||||||||||||| |||||||||
Sbjct: 105 ttcttcctcaggatctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgc 164
Query: 346 gac 348
|||
Sbjct: 165 gac 167
>gb|CX611821.1|CX611821 ANR1_26_H11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_H11_A002 5', mRNA sequence
Length = 743
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 286 ttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgc 345
|||||||||| | |||| |||||||||||| || |||||||||||||| |||||||||
Sbjct: 115 ttcttcctcaggatctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgc 174
Query: 346 gac 348
|||
Sbjct: 175 gac 177
Score = 40.1 bits (20), Expect = 0.34
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 351 cgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcat 410
||||| ||| |||||||| |||||||||||||| | |||||| | ||||||| ||||
Sbjct: 189 cgacgcgcccctggagaaccaccccaagctcaaggcccacgccgtcaccgtctttatcat 248
Query: 411 gacctgcgaggcggcggcgcagct 434
| | |||||| | ||| |||||||
Sbjct: 249 ggcttgcgagtccgcgacgcagct 272
>gb|CX619311.1|CX619311 GABR1_44_E12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_44_E12_A002 5', mRNA sequence
Length = 609
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 286 ttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgc 345
|||||||||| | |||| |||||||||||| || |||||||||||||| |||||||||
Sbjct: 199 ttcttcctcaggatctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgc 258
Query: 346 gac 348
|||
Sbjct: 259 gac 261
Score = 40.1 bits (20), Expect = 0.34
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 351 cgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcat 410
||||| ||| |||||||| |||||||||||||| | |||||| | ||||||| ||||
Sbjct: 273 cgacgcgcccctggagaaccaccccaagctcaaggcccacgccgtcaccgtctttatcat 332
Query: 411 gacctgcgaggcggcggcgcagct 434
| | |||||| | ||| |||||||
Sbjct: 333 ggcttgcgagtccgcgacgcagct 356
>gb|CL174039.1|CL174039 104_378_10891292_116_31771_044 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891292, DNA
sequence
Length = 732
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 299 tcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
|||| |||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 53 tctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgcgac 102
>gb|CW030499.1|CW030499 104_258_10500274_116_30404 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500274, DNA
sequence
Length = 830
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 299 tcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
|||| |||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 516 tctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgcgac 565
>gb|CW422496.1|CW422496 fsbb001f131m23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f131m23, DNA
sequence
Length = 768
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 299 tcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
|||| |||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 538 tctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgcgac 587
>gb|CD429347.1|CD429347 ETH1_4_H06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_4_H06_A002 3', mRNA sequence
Length = 665
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 299 tcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
|||| |||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 8 tctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgcgac 57
Score = 40.1 bits (20), Expect = 0.34
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 351 cgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcat 410
||||| ||| |||||||| |||||||||||||| | |||||| | ||||||| ||||
Sbjct: 69 cgacgcgcccctggagaaccaccccaagctcaaggcccacgccgtcaccgtctttatcat 128
Query: 411 gacctgcgaggcggcggcgcagct 434
| | |||||| | ||| |||||||
Sbjct: 129 ggcttgcgagtccgcgacgcagct 152
>gb|CN132491.1|CN132491 OX1_6_B04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_6_B04_A002 5', mRNA sequence
Length = 768
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 299 tcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgac 348
|||| |||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 254 tctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgcgac 303
>gb|CW099003.1|CW099003 104_465_11003316_116_34375_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003316, DNA
sequence
Length = 626
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 299 tcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcga 347
|||| |||||||||||| || |||||||||||||| |||||||||||
Sbjct: 578 tctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgcga 626
>gb|CW411986.1|CW411986 fsbb001f107g13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f107g13, DNA
sequence
Length = 638
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 299 tcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcga 347
|||| |||||||||||| || |||||||||||||| |||||||||||
Sbjct: 590 tctttgagatcgcgccgggcgccaagcagatgttctccttcctgcgcga 638
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 255,174
Number of Sequences: 832831
Number of extensions: 255174
Number of successful extensions: 74331
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74165
Number of HSP's gapped (non-prelim): 166
length of query: 885
length of database: 491,359,669
effective HSP length: 20
effective length of query: 865
effective length of database: 474,703,049
effective search space: 410618137385
effective search space used: 410618137385
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)