BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2751069.2.1
(940 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD204731.1|CD204731 HS1_9_B12.g1_A012 Heat-shocked seedl... 916 0.0
gb|BG946938.1|BG946938 IP1_1_E11.b1_A002 Immature pannicle ... 706 0.0
gb|CL197060.1|CL197060 104_423_10943485_114_32325_051 Sorgh... 287 9e-076
gb|CL197061.1|CL197061 104_423_10943485_116_32329_051 Sorgh... 206 3e-051
gb|BF481976.1|BF481976 FM1_19_G01.b1_A003 Floral-Induced Me... 88 2e-015
gb|BI351588.1|BI351588 IP1_72_G08.b1_A002 Immature pannicle... 70 4e-010
gb|AW677153.1|AW677153 DG1_5_C07.b1_A002 Dark Grown 1 (DG1)... 64 2e-008
gb|BG560618.1|BG560618 RHIZ2_59_F04.b1_A003 Rhizome2 (RHIZ2... 64 2e-008
>gb|CD204731.1|CD204731 HS1_9_B12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_B12_A012 5', mRNA sequence
Length = 686
Score = 916 bits (462), Expect = 0.0
Identities = 501/514 (97%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 514 ctgttttcatatcaagtggtatgacacgaaagccagaagaaatcaatggagcatcatctg 455
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaaaatgttcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 395
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 394 ctattccagtgcaaagctggagaaggtggatgtctcttgaaagaagagcttcatcatgag 335
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 275
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagc 356
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 274 caagtggcatgatcatctgccccccagaaaatctcataggtcgcaacccaggaagtgagc 215
Query: 357 acgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcag 416
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 214 acgcactggtcttcagtgatgaagccaaatacgcatcaatattgtaatcggcccattcag 155
Query: 417 atctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgg 476
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 154 atctatgctccctcagaaatcggaccagtactgccggtgggacactctgcagtaacatgg 95
Query: 477 atgccttcgcacaaataatgcctcctggggctccaaatgtaatcccagcattgctagtat 536
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 94 atgccttcgcacaaataatgcctccaggggctccaaatgtaatcccagcattgctgttat 35
Query: 537 tcctaattttcttggttgagttgcaagcaacaac 570
||||||||||||||||||||||||||||||||||
Sbjct: 34 tcctaattttcttggttgagttgcaagcaacaac 1
>gb|BG946938.1|BG946938 IP1_1_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 530
Score = 706 bits (356), Expect = 0.0
Identities = 395/408 (96%)
Strand = Plus / Minus
Query: 347 ggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatca 406
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 529 ggaagtgagcacgcactggtcttcagtgatgaagccaaatacgcatccatattgtaatcg 470
Query: 407 gcccattcagatctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgc 466
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 469 gcccattcagatctatgctccctcagaaatcggaccagtactgccggtgggacactctgc 410
Query: 467 agtaacatggatgccttcgcacaaataatgcctcctggggctccaaatgtaatcccagca 526
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 409 agtaacatggatgccttcgcacaaataatgcctccaggggctccaaatgtaatcccagca 350
Query: 527 ttgctagtattcctaattttcttggttgagttgcaagcaacaacaacgtcttcaatgcca 586
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttgctgttattcctaattttcttggttgagttgcaagcaacaacaacgtcttcaatgcca 290
Query: 587 tctccccccattacagaccaaccatcatcattgaaaccactaatggcatcattaaacccc 646
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 289 tctccccccattacagaccagccatcatcattgaaaccactaatggcatcattaaaaccc 230
Query: 647 ctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacact 706
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 229 ctgcttagtctttgactaaaggtccgtagtactgcaggttgccttcccaaggcgtacact 170
Query: 707 acttctccacttgtttcttgagcaatttgtctaaggtggcgcagtgcc 754
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 169 acttctccacttgtttcttgagcaatttgcctaaggtggcgcagtgcc 122
>gb|CL197060.1|CL197060 104_423_10943485_114_32325_051 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943485, DNA
sequence
Length = 709
Score = 287 bits (145), Expect = 9e-076
Identities = 166/173 (95%)
Strand = Plus / Plus
Query: 23 aaaaagaaaaggtaatgttgttagtgatgcttaactgttttcatatcaagtggtatgaca 82
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 197 aaaaggaaaaggtaatgttgttgacgatgcttaactgttttcatatcaagtggtatgaca 256
Query: 83 cgaaagccagaggaaatcaatggagcatcatccggaaaatgctcatcaattggtgcaaac 142
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 257 cgaaagccagaagaaatcaatggagcatcatctggaaaatgttcatcaattggtgcaaac 316
Query: 143 acaagctggaaggaggaacccacagatttctcatctattccagtgcaaagctg 195
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acaagctggaaggaggaacccacagatttctcatctattccagtgcaaagctg 369
>gb|CL197061.1|CL197061 104_423_10943485_116_32329_051 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943485, DNA
sequence
Length = 688
Score = 206 bits (104), Expect = 3e-051
Identities = 113/116 (97%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 57
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacg 389
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 56 aggtcgcaacccgggaagtgagcacgcactggtcttcagtgatgaagccaaatacg 1
Score = 149 bits (75), Expect = 5e-034
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 193 ctggagaaggtggatgtcccttgaaagaagggcttcatcatgagtaagaggttgtccttc 252
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 337 ctggagaaggtggatgtctcttgaaagaagagcttcatcatgagtaagaggttgtccttc 278
Query: 253 aaggcggacaacttcaagaatct 275
|||||||||||||||||||||||
Sbjct: 277 aaggcggacaacttcaagaatct 255
>gb|BF481976.1|BF481976 FM1_19_G01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 391
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 272 atctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctc 331
|||||||| || ||||| ||||||||||| |||||||| ||||| | |||||||||||||
Sbjct: 380 atctcctcattgtccaccgtgtgagcaaggggcatgatgatctggctcccagaaaatctc 321
Query: 332 atgggtcgcaacccaggaag 351
|| || ||||||||||||||
Sbjct: 320 ataggccgcaacccaggaag 301
Score = 87.7 bits (44), Expect = 2e-015
Identities = 148/182 (81%), Gaps = 3/182 (1%)
Strand = Plus / Minus
Query: 461 ctctgcagtaacatggatgccttcgcacaaataatgcctcctggggctccaaatgtaatc 520
|||||||| ||||||||||| || ||||| || || ||||| ||||||||||| | | |
Sbjct: 189 ctctgcagcaacatggatgctttagcacagatgatacctccaggggctccaaaagcagtt 130
Query: 521 ccagcattgctagtattcctaattttcttggttgagttgcaagcaacaacaacgtcttca 580
||| ||||||| ||||||| ||||| | |||||||||||| | ||| |||||
Sbjct: 129 gcaggattgctaccgctcctaatcttcttcg---agttgcaagcaatgataacatcttct 73
Query: 581 atgccatctccccccattacagaccaaccatcatcattgaaaccactaatggcatcatta 640
||||||||||| |||| | |||||||||||||||||||||||||| || |||||||||
Sbjct: 72 atgccatctccagccataatggaccaaccatcatcattgaaaccacttatagcatcatta 13
Query: 641 aa 642
||
Sbjct: 12 aa 11
>gb|BI351588.1|BI351588 IP1_72_G08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 461
Score = 69.9 bits (35), Expect = 4e-010
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 812 tcaggaacactccatgcctcgagatctagatggtccactatatgcacaatcgaacctnna 871
|||||||||||||| || || || || |||||||||||||| |||||||||| || |
Sbjct: 461 tcaggaacactccaagcgtcaaggtcgagatggtccactattcgcacaatcgagccgcca 402
Query: 872 ccttcgcatgggcgcactaaatacccacttggaagcatctc 912
|| || ||| |||| |||||||| ||||| |||||||||||
Sbjct: 401 ccctcacattggcgaactaaatagccactaggaagcatctc 361
>gb|AW677153.1|AW677153 DG1_5_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 63.9 bits (32), Expect = 2e-008
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 403 atcagcccattcagatctatgctccctcagaaatcgtaccagtactgccggtgggacgct 462
||||||||||||||| | ||||||||||| |||||| || |||| || ||||| || |
Sbjct: 241 atcagcccattcagagcgatgctccctcaaaaatcgcacaagtatagcaggtggcacatt 182
Query: 463 ctgcagtaacatggatgccttcgcacaaataatgcc 498
|||||||||||| ||||| || ||||| || |||||
Sbjct: 181 ctgcagtaacattgatgcttttgcacacatgatgcc 146
>gb|BG560618.1|BG560618 RHIZ2_59_F04.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 419
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 403 atcagcccattcagatctatgctccctcagaaatcgtaccagta 446
||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 245 atcagcccattcagagcgatgctccctcagaaatcgtactagta 202
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 232,861
Number of Sequences: 832831
Number of extensions: 232861
Number of successful extensions: 63251
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63239
Number of HSP's gapped (non-prelim): 12
length of query: 940
length of database: 491,359,669
effective HSP length: 20
effective length of query: 920
effective length of database: 474,703,049
effective search space: 436726805080
effective search space used: 436726805080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)