BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493531.2.1
(1061 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN146258.1|CN146258 WOUND1_39_D07.b1_A002 Wounded leaves... 745 0.0
gb|CX607022.1|CX607022 ANR1_6_F04.b1_A002 Anaerobic roots S... 745 0.0
gb|CW151902.1|CW151902 104_552_11144196_148_36321_034 Sorgh... 630 e-179
gb|BF421232.1|BF421232 FM1_7_B08.g1_A003 Floral-Induced Mer... 617 e-175
gb|CF431288.1|CF431288 NIT1_5_F12.b1_A002 Nitrogen-deficien... 603 e-170
gb|BG050409.1|BG050409 FM1_53_G06.g1_A003 Floral-Induced Me... 597 e-169
gb|BG051375.1|BG051375 FM1_55_G05.g1_A003 Floral-Induced Me... 589 e-166
gb|BF421314.1|BF421314 FM1_7_B08.b1_A003 Floral-Induced Mer... 480 e-133
gb|CW201862.1|CW201862 104_627_11184792_116_37108_082 Sorgh... 468 e-130
gb|CN146336.1|CN146336 WOUND1_39_D07.g1_A002 Wounded leaves... 456 e-126
gb|CX607108.1|CX607108 ANR1_6_F04.g1_A002 Anaerobic roots S... 456 e-126
gb|BG051053.1|BG051053 FM1_55_G05.b1_A003 Floral-Induced Me... 428 e-118
gb|BG050340.1|BG050340 FM1_53_G06.b1_A003 Floral-Induced Me... 400 e-109
gb|CW260111.1|CW260111 104_726_11228790_116_35191_019 Sorgh... 240 2e-061
gb|CW260112.1|CW260112 104_726_11228790_148_35187_019 Sorgh... 240 2e-061
gb|CW406941.1|CW406941 fsbb001f100d03k0 Sorghum methylation... 240 2e-061
gb|CL181626.1|CL181626 104_392_10896876_116_31926_252 Sorgh... 230 2e-058
gb|CW406940.1|CW406940 fsbb001f100d03f0 Sorghum methylation... 230 2e-058
gb|CL181627.1|CL181627 104_392_10896876_148_31925_252 Sorgh... 222 5e-056
gb|CF073210.1|CF073210 FE1_28_E04.g1_A002 Iron-deficient se... 198 7e-049
gb|CW043252.1|CW043252 104_278_10507811_114_30254 Sorghum m... 153 4e-035
gb|CW201863.1|CW201863 104_627_11184792_148_37107_082 Sorgh... 129 6e-028
gb|CW149259.1|CW149259 104_548_11142395_116_36285_044 Sorgh... 58 2e-006
gb|CW088882.1|CW088882 104_434_10948378_115_32585_047 Sorgh... 48 0.002
gb|CW096538.1|CW096538 104_462_11001950_116_34349_059 Sorgh... 48 0.002
gb|CW179534.1|CW179534 104_593_11160150_148_36628_019 Sorgh... 48 0.002
gb|CW421780.1|CW421780 fsbb001f130l24f0 Sorghum methylation... 48 0.002
gb|CX620549.1|CX620549 GABR1_52_C02.g1_A002 GA- or brassino... 48 0.002
gb|CW065394.1|CW065394 104_312_10523123_114_30128 Sorghum m... 46 0.007
gb|CW088011.1|CW088011 104_432_10947971_116_32556_034 Sorgh... 46 0.007
gb|CW158383.1|CW158383 104_564_11148789_148_36396_093 Sorgh... 46 0.007
gb|CW217181.1|CW217181 104_650_11195518_148_37135_091 Sorgh... 46 0.007
gb|CW222666.1|CW222666 104_658_11202497_148_37178_075 Sorgh... 46 0.007
gb|CW275672.1|CW275672 104_749_11405085_148_35392_095 Sorgh... 46 0.007
gb|CW334545.1|CW334545 104_833_11482559_116_36074_096 Sorgh... 46 0.007
gb|CW361404.1|CW361404 fsbb001f029p09k0 Sorghum methylation... 46 0.007
gb|CW385608.1|CW385608 fsbb001f069c11k0 Sorghum methylation... 46 0.007
gb|CW416554.1|CW416554 fsbb001f117c14f0 Sorghum methylation... 46 0.007
gb|BF588017.1|BF588017 FM1_35_F10.g1_A003 Floral-Induced Me... 46 0.007
gb|BI140972.1|BI140972 IP1_41_F01.b1_A002 Immature pannicle... 46 0.007
gb|BI351277.1|BI351277 IP1_69_D08.b1_A002 Immature pannicle... 46 0.007
gb|BM318487.1|BM318487 PI1_14_B07.b9_A002 Pathogen induced ... 46 0.007
gb|CD425687.1|CD425687 SA1_13_A05.g1_A002 Salicylic acid-tr... 46 0.007
gb|CD426007.1|CD426007 SA1_15_A05.g1_A002 Salicylic acid-tr... 46 0.007
gb|CF073187.1|CF073187 FE1_28_B10.g1_A002 Iron-deficient se... 46 0.007
gb|CN127385.1|CN127385 RHOH1_22_E10.g3_A002 Acid- and alkal... 46 0.007
gb|CN129162.1|CN129162 RHOH1_33_H01.g1_A002 Acid- and alkal... 46 0.007
gb|CN143869.1|CN143869 WOUND1_18_H02.g1_A002 Wounded leaves... 46 0.007
gb|CX619758.1|CX619758 GABR1_47_D07.g1_A002 GA- or brassino... 46 0.007
gb|BZ626552.1|BZ626552 ih47a04.b1 WGS-SbicolorF (DH5a methy... 44 0.026
gb|CL156428.1|CL156428 104_343_10782855_116_31476_183 Sorgh... 44 0.026
gb|CW021162.1|CW021162 104_109_10409383_114_30493 Sorghum m... 44 0.026
gb|CW058933.1|CW058933 104_301_10519020_115_30164 Sorghum m... 44 0.026
gb|CW059657.1|CW059657 104_302_10519448_115_30168 Sorghum m... 44 0.026
gb|CW116281.1|CW116281 104_491_11107026_148_34595_065 Sorgh... 44 0.026
gb|CW128153.1|CW128153 104_509_11113849_116_34746_005 Sorgh... 44 0.026
gb|CW171655.1|CW171655 104_582_11155860_116_36532_040 Sorgh... 44 0.026
gb|CW218693.1|CW218693 104_652_11196326_116_37532_057 Sorgh... 44 0.026
gb|CW229659.1|CW229659 104_671_11207427_116_37267_014 Sorgh... 44 0.026
gb|CW238204.1|CW238204 104_695_11216599_148_37524_032 Sorgh... 44 0.026
gb|CW289919.1|CW289919 104_769_11412731_116_35553_048 Sorgh... 44 0.026
gb|CW351834.1|CW351834 fsbb001f013m13f0 Sorghum methylation... 44 0.026
gb|CW365661.1|CW365661 fsbb001f038e22k0 Sorghum methylation... 44 0.026
gb|CW371212.1|CW371212 fsbb001f046j02f0 Sorghum methylation... 44 0.026
gb|CW469138.1|CW469138 fsbb001f221l08k0 Sorghum methylation... 44 0.026
gb|BE598815.1|BE598815 PI1_83_H02.b1_A002 Pathogen induced ... 44 0.026
gb|BG560428.1|BG560428 RHIZ2_74_C05.b1_A003 Rhizome2 (RHIZ2... 44 0.026
gb|CD224209.1|CD224209 CCC1_32_A02.g1_A007 Callus culture/c... 44 0.026
gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region,... 44 0.026
gb|BZ341376.1|BZ341376 ic45a01.g1 WGS-SbicolorF (JM107 adap... 42 0.10
gb|BZ350112.1|BZ350112 hr50b08.g1 WGS-SbicolorF (JM107 adap... 42 0.10
gb|CL167495.1|CL167495 104_364_10810121_116_31803_185 Sorgh... 42 0.10
gb|CW052642.1|CW052642 104_292_10515597_115_30287 Sorghum m... 42 0.10
gb|CW136108.1|CW136108 104_521_11118204_148_34841_048 Sorgh... 42 0.10
gb|CW147658.1|CW147658 104_542_11140005_148_35004_095 Sorgh... 42 0.10
gb|CW174433.1|CW174433 104_586_11157402_148_36564_071 Sorgh... 42 0.10
gb|CW188634.1|CW188634 104_608_11173150_116_36736_087 Sorgh... 42 0.10
gb|CW219949.1|CW219949 104_654_11197086_148_37151_025 Sorgh... 42 0.10
gb|CW241851.1|CW241851 104_701_11219004_148_37553_044 Sorgh... 42 0.10
gb|CW259301.1|CW259301 104_725_11228348_148_35181_072 Sorgh... 42 0.10
gb|CW312862.1|CW312862 104_802_11470984_116_35783_050 Sorgh... 42 0.10
gb|CW348338.1|CW348338 fsbb001f008k20f0 Sorghum methylation... 42 0.10
gb|CW355145.1|CW355145 fsbb001f019k15k0 Sorghum methylation... 42 0.10
gb|CW371651.1|CW371651 fsbb001f047d14f0 Sorghum methylation... 42 0.10
gb|CW435687.1|CW435687 fsbb001f151p08k0 Sorghum methylation... 42 0.10
gb|CW449647.1|CW449647 fsbb001f183o08f0 Sorghum methylation... 42 0.10
gb|CW456246.1|CW456246 fsbb001f201i05f0 Sorghum methylation... 42 0.10
gb|CW464658.1|CW464658 fsbb001f215a12k0 Sorghum methylation... 42 0.10
gb|CW469618.1|CW469618 fsbb001f222g20k0 Sorghum methylation... 42 0.10
gb|CW470057.1|CW470057 fsbb001f223b06f0 Sorghum methylation... 42 0.10
gb|CW482801.1|CW482801 fsbb001f244b09f0 Sorghum methylation... 42 0.10
gb|BE362251.1|BE362251 DG1_85_F10.b1_A002 Dark Grown 1 (DG1... 42 0.10
gb|BE367111.1|BE367111 PI1_43_C02.b1_A002 Pathogen induced ... 42 0.10
gb|BE367150.1|BE367150 PI1_43_F11.b1_A002 Pathogen induced ... 42 0.10
gb|BE367151.1|BE367151 PI1_43_F10.b1_A002 Pathogen induced ... 42 0.10
gb|BG051046.1|BG051046 FM1_55_F09.b1_A003 Floral-Induced Me... 42 0.10
gb|BG463290.1|BG463290 EM1_48_G04.b1_A002 Embryo 1 (EM1) So... 42 0.10
gb|CD429801.1|CD429801 ETH1_15_C12.g1_A002 Ethylene-treated... 42 0.10
gb|CD462574.1|CD462574 ETH1_38_C11.g1_A002 Ethylene-treated... 42 0.10
gb|CL163141.1|CL163141 104_356_10806927_114_31810_063 Sorgh... 40 0.41
gb|CL166890.1|CL166890 104_363_10809690_114_31800_138 Sorgh... 40 0.41
gb|CL173604.1|CL173604 104_377_10890991_116_31793_127 Sorgh... 40 0.41
gb|CL176299.1|CL176299 104_382_10893042_116_31763_258 Sorgh... 40 0.41
gb|CL185475.1|CL185475 104_399_10899558_116_32395_021 Sorgh... 40 0.41
gb|CW029128.1|CW029128 104_256_10499499_114_30399 Sorghum m... 40 0.41
gb|CW029129.1|CW029129 104_256_10499499_116_30400 Sorghum m... 40 0.41
gb|CW036629.1|CW036629 104_268_10503878_114_30381 Sorghum m... 40 0.41
gb|CW038342.1|CW038342 104_270_10504868_115_30386 Sorghum m... 40 0.41
gb|CW038849.1|CW038849 104_271_10505157_114_30387 Sorghum m... 40 0.41
gb|CW052501.1|CW052501 104_292_10515562_115_30190 Sorghum m... 40 0.41
gb|CW052502.1|CW052502 104_292_10515562_115_30287 Sorghum m... 40 0.41
gb|CW066390.1|CW066390 104_313_10523659_114_30148 Sorghum m... 40 0.41
gb|CW088277.1|CW088277 104_433_10948090_114_32573_043 Sorgh... 40 0.41
gb|CW088979.1|CW088979 104_434_10948435_116_32600_078 Sorgh... 40 0.41
gb|CW093263.1|CW093263 104_456_10999668_116_37472_044 Sorgh... 40 0.41
gb|CW104478.1|CW104478 104_473_11012454_116_34443_021 Sorgh... 40 0.41
gb|CW108139.1|CW108139 104_478_11096979_116_34485_004 Sorgh... 40 0.41
gb|CW118434.1|CW118434 104_494_11108206_116_34620_081 Sorgh... 40 0.41
gb|CW167536.1|CW167536 104_576_11153655_148_37468_052 Sorgh... 40 0.41
gb|CW172392.1|CW172392 104_583_11156267_148_36534_038 Sorgh... 40 0.41
gb|CW214527.1|CW214527 104_646_11194063_116_37050_024 Sorgh... 40 0.41
gb|CW227811.1|CW227811 104_667_11206015_148_37244_026 Sorgh... 40 0.41
gb|CW271423.1|CW271423 104_743_11402991_116_35338_054 Sorgh... 40 0.41
gb|CW274504.1|CW274504 104_747_11404462_116_35377_089 Sorgh... 40 0.41
gb|CW278543.1|CW278543 104_753_11406603_148_35431_016 Sorgh... 40 0.41
gb|CW278545.1|CW278545 104_753_11406604_148_35432_016 Sorgh... 40 0.41
gb|CW307396.1|CW307396 104_795_11468119_148_35735_024 Sorgh... 40 0.41
gb|CW312340.1|CW312340 104_802_11470707_116_35780_012 Sorgh... 40 0.41
gb|CW316120.1|CW316120 104_807_11472725_148_35844_023 Sorgh... 40 0.41
gb|CW318660.1|CW318660 104_811_11474070_116_35879_031 Sorgh... 40 0.41
gb|CW355038.1|CW355038 fsbb001f019i03k0 Sorghum methylation... 40 0.41
gb|CW355144.1|CW355144 fsbb001f019k15f0 Sorghum methylation... 40 0.41
gb|CW365660.1|CW365660 fsbb001f038e22f0 Sorghum methylation... 40 0.41
gb|CW371631.1|CW371631 fsbb001f047d01f0 Sorghum methylation... 40 0.41
gb|CW388681.1|CW388681 fsbb001f073i17f0 Sorghum methylation... 40 0.41
gb|CW390683.1|CW390683 fsbb001f076h04f0 Sorghum methylation... 40 0.41
gb|CW408659.1|CW408659 fsbb001f102k08f0 Sorghum methylation... 40 0.41
gb|CW421772.1|CW421772 fsbb001f130l20f0 Sorghum methylation... 40 0.41
gb|CW453208.1|CW453208 fsbb001f197b20k0 Sorghum methylation... 40 0.41
gb|CW463587.1|CW463587 fsbb001f212f02k0 Sorghum methylation... 40 0.41
gb|CW472733.1|CW472733 fsbb001f227m23f0 Sorghum methylation... 40 0.41
gb|CW488960.1|CW488960 fsbb001f265j24f0 Sorghum methylation... 40 0.41
gb|CW492114.1|CW492114 fsbb001f282e07f0 Sorghum methylation... 40 0.41
gb|AW283999.1|AW283999 LG1_264_E08.g1_A002 Light Grown 1 (L... 40 0.41
gb|AW564506.1|AW564506 LG1_295_D10.b1_A002 Light Grown 1 (L... 40 0.41
gb|AW677955.1|AW677955 WS1_12_F04.b1_A002 Water-stressed 1 ... 40 0.41
gb|AW680714.1|AW680714 WS1_6_E03.g1_A002 Water-stressed 1 (... 40 0.41
gb|AW747320.1|AW747320 WS1_67_A08.g1_A002 Water-stressed 1 ... 40 0.41
gb|AW924628.1|AW924628 WS1_70_B02.g1_A002 Water-stressed 1 ... 40 0.41
gb|BE361754.1|BE361754 DG1_82_G01.b1_A002 Dark Grown 1 (DG1... 40 0.41
gb|BE365932.1|BE365932 PI1_2_C02.g1_A002 Pathogen induced 1... 40 0.41
gb|BE367121.1|BE367121 PI1_43_B02.b1_A002 Pathogen induced ... 40 0.41
gb|BE597240.1|BE597240 PI1_69_H03.g1_A002 Pathogen induced ... 40 0.41
gb|BE599979.1|BE599979 PI1_78_A06.b1_A002 Pathogen induced ... 40 0.41
gb|BE600936.1|BE600936 PI1_95_A04.b1_A002 Pathogen induced ... 40 0.41
gb|BE917749.1|BE917749 OV1_6_F07.b1_A002 Ovary 1 (OV1) Sorg... 40 0.41
gb|BG052144.1|BG052144 RHIZ2_6_F11.b1_A003 Rhizome2 (RHIZ2)... 40 0.41
gb|BG052938.1|BG052938 RHIZ2_15_B11.b1_A003 Rhizome2 (RHIZ2... 40 0.41
gb|BG102282.1|BG102282 RHIZ2_24_D04.b1_A003 Rhizome2 (RHIZ2... 40 0.41
gb|BG355452.1|BG355452 EM1_16_F05.b1_A002 Embryo 1 (EM1) So... 40 0.41
gb|BG463957.1|BG463957 EM1_52_H10.b1_A002 Embryo 1 (EM1) So... 40 0.41
gb|BG464936.1|BG464936 EM1_36_D06.g1_A002 Embryo 1 (EM1) So... 40 0.41
gb|BG557781.1|BG557781 EM1_53_A06.b1_A002 Embryo 1 (EM1) So... 40 0.41
gb|BI098268.1|BI098268 IP1_30_C03.b1_A002 Immature pannicle... 40 0.41
gb|BI098989.1|BI098989 IP1_36_A01.b1_A002 Immature pannicle... 40 0.41
gb|BI140967.1|BI140967 IP1_41_E06.b1_A002 Immature pannicle... 40 0.41
gb|BI211935.1|BI211935 IP1_62_D01.b1_A002 Immature pannicle... 40 0.41
gb|BM326068.1|BM326068 PIC1_65_D07.b1_A002 Pathogen-infecte... 40 0.41
gb|CB927745.1|CB927745 ABA1_27_D11.g1_A012 Abscisic acid-tr... 40 0.41
gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedl... 40 0.41
gb|CD205332.1|CD205332 HS1_13_A07.g1_A012 Heat-shocked seed... 40 0.41
gb|CD209496.1|CD209496 HS1_42_D10.g1_A012 Heat-shocked seed... 40 0.41
gb|CD225397.1|CD225397 CCC1_3_H06.b1_A007 Callus culture/ce... 40 0.41
gb|CD230048.1|CD230048 SS1_40_H09.g1_A012 Salt-stressed see... 40 0.41
gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed see... 40 0.41
gb|CD235047.1|CD235047 SS1_19_A02.g1_A012 Salt-stressed see... 40 0.41
gb|CD423701.1|CD423701 SA1_24_D09.g1_A002 Salicylic acid-tr... 40 0.41
gb|CD429262.1|CD429262 ETH1_3_H08.g1_A002 Ethylene-treated ... 40 0.41
gb|CD431137.1|CD431137 ETH1_7_B11.b1_A002 Ethylene-treated ... 40 0.41
gb|CD432827.1|CD432827 ETH1_33_A06.g1_A002 Ethylene-treated... 40 0.41
gb|CF071581.1|CF071581 FE1_17_C10.b1_A002 Iron-deficient se... 40 0.41
gb|CF072549.1|CF072549 FE1_3_F04.g1_A002 Iron-deficient see... 40 0.41
gb|CF429677.1|CF429677 PH1_23_G06.g1_A002 Phosphorous-defic... 40 0.41
gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-defic... 40 0.41
gb|CF432541.1|CF432541 NIT1_17_A02.g1_A002 Nitrogen-deficie... 40 0.41
gb|CF433587.1|CF433587 NIT1_28_F05.b1_A002 Nitrogen-deficie... 40 0.41
gb|CF434305.1|CF434305 NIT1_29_E02.b1_A002 Nitrogen-deficie... 40 0.41
gb|CN134486.1|CN134486 OX1_26_D09.g1_A002 Oxidatively-stres... 40 0.41
gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stres... 40 0.41
gb|CN136304.1|CN136304 OX1_42_D10.b1_A002 Oxidatively-stres... 40 0.41
gb|CN136375.1|CN136375 OX1_42_D10.g1_A002 Oxidatively-stres... 40 0.41
gb|CN139150.1|CN139150 OX1_16_F12.b1_A002 Oxidatively-stres... 40 0.41
gb|CN142767.1|CN142767 WOUND1_12_C09.b1_A002 Wounded leaves... 40 0.41
gb|CN142917.1|CN142917 WOUND1_13_C10.b1_A002 Wounded leaves... 40 0.41
gb|CN145771.1|CN145771 WOUND1_35_D09.b1_A002 Wounded leaves... 40 0.41
gb|CN149835.1|CN149835 WOUND1_65_D10.b1_A002 Wounded leaves... 40 0.41
gb|CN151326.1|CN151326 WOUND1_74_G01.g1_A002 Wounded leaves... 40 0.41
gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots S... 40 0.41
gb|CX618847.1|CX618847 GABR1_42_B09.b1_A002 GA- or brassino... 40 0.41
gb|AY304539.1| Sorghum bicolor starch branching enzyme IIb ... 40 0.41
>gb|CN146258.1|CN146258 WOUND1_39_D07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D07_A002 3', mRNA sequence
Length = 686
Score = 745 bits (376), Expect = 0.0
Identities = 540/589 (91%), Gaps = 8/589 (1%)
Strand = Plus / Plus
Query: 420 tcatgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccg 479
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 66 tcatgcccatccagtaccgccgtgttaagtgcctccgagaaggtggtgtcaggttctctg 125
Query: 480 tcaacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatg 539
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 126 tcaatggtcggcacttcttctttacagtcctaatcagcaatgttggtggcgcgggtgatg 185
Query: 540 ttaggtctgtgaagatcaaaggaacggagctaggatggctccctatgggccgcaactggg 599
|||| |||||||||||||||||||| ||| ||||||||||| | ||||||||||| ||||
Sbjct: 186 ttagatctgtgaagatcaaaggaacagagttaggatggctctcgatgggccgcaattggg 245
Query: 600 gccaggtgtggcacatcaactgtgacatgaggggacagcctctatcgtttgagctcagct 659
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 246 gccaggtgtggcacatcaactgtgacatgaggggacaacccctgtcgtttgagctcagct 305
Query: 660 caagcgatagcaagacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggca 719
|||||||| ||||||| || |||||||||||||| ||||||||||||||||||| ||||
Sbjct: 306 caagcgatggcaagacactcaccagtttcaacgttgtgcccaaggattgggagtatggca 365
Query: 720 agacatacacggggaagcagtttcttctgtagagaatggagtgccgcaagatcagcttac 779
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 366 agacatacacggggaagcagtttcttctgtagagaat-gagtgccacaagatcagcttac 424
Query: 780 agttcctcatttttcttctgatcctacgagttcggccgtggtgtatgtatattcctctgc 839
|||| ||||||||| ||||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 425 agtttctcatttttgttctgatcctacgagttgggctgtgg----tgtatattcctctgc 480
Query: 840 agaagaagcaatatcgttattaggagaaaatcacttagtgcaggg-ctcagatagttact 898
|||| |||||||||| ||||||||||||||| ||||||||||||| || |||||||||||
Sbjct: 481 agaacaagcaatatcattattaggagaaaattacttagtgcagggcctaagatagttact 540
Query: 899 atggctcat-aacgcattttcatgtacccttcatagttg-tctaaagaggcttgatgtat 956
|||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 541 ctggctcataaatgctttttcatgtacccttcatagttgctctaaagaggcttgatgtat 600
Query: 957 cattcaaaatagaaggccggattcgggtatgtccggagtattacaatat 1005
|||| |||||||||||||| ||| || | | |||| ||||||||||||
Sbjct: 601 cattgaaaatagaaggccgaatttggatgtctccgttgtattacaatat 649
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 404 cccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||| | ||||||||||
Sbjct: 2 cccaaccaccatttcctcctccccatccagt 32
>gb|CX607022.1|CX607022 ANR1_6_F04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_F04_A002 3', mRNA sequence
Length = 718
Score = 745 bits (376), Expect = 0.0
Identities = 540/589 (91%), Gaps = 8/589 (1%)
Strand = Plus / Plus
Query: 420 tcatgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccg 479
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 68 tcatgcccatccagtaccgccgtgttaagtgcctccgagaaggtggtgtcaggttctctg 127
Query: 480 tcaacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatg 539
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 128 tcaatggtcggcacttcttctttacagtcctaatcagcaatgttggtggcgcgggtgatg 187
Query: 540 ttaggtctgtgaagatcaaaggaacggagctaggatggctccctatgggccgcaactggg 599
|||| |||||||||||||||||||| ||| ||||||||||| | ||||||||||| ||||
Sbjct: 188 ttagatctgtgaagatcaaaggaacagagttaggatggctctcgatgggccgcaattggg 247
Query: 600 gccaggtgtggcacatcaactgtgacatgaggggacagcctctatcgtttgagctcagct 659
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 248 gccaggtgtggcacatcaactgtgacatgaggggacaacccctgtcgtttgagctcagct 307
Query: 660 caagcgatagcaagacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggca 719
|||||||| ||||||| || |||||||||||||| ||||||||||||||||||| ||||
Sbjct: 308 caagcgatggcaagacactcaccagtttcaacgttgtgcccaaggattgggagtatggca 367
Query: 720 agacatacacggggaagcagtttcttctgtagagaatggagtgccgcaagatcagcttac 779
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 368 agacatacacggggaagcagtttcttctgtagagaat-gagtgccacaagatcagcttac 426
Query: 780 agttcctcatttttcttctgatcctacgagttcggccgtggtgtatgtatattcctctgc 839
|||| ||||||||| ||||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 427 agtttctcatttttgttctgatcctacgagttgggctgtgg----tgtatattcctctgc 482
Query: 840 agaagaagcaatatcgttattaggagaaaatcacttagtgcaggg-ctcagatagttact 898
|||| |||||||||| ||||||||||||||| ||||||||||||| || |||||||||||
Sbjct: 483 agaacaagcaatatcattattaggagaaaattacttagtgcagggcctaagatagttact 542
Query: 899 atggctcat-aacgcattttcatgtacccttcatagttg-tctaaagaggcttgatgtat 956
|||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 543 ctggctcataaatgctttttcatgtacccttcatagttgctctaaagaggcttgatgtat 602
Query: 957 cattcaaaatagaaggccggattcgggtatgtccggagtattacaatat 1005
|||| |||||||||||||| ||| || | | |||| ||||||||||||
Sbjct: 603 cattgaaaatagaaggccgaatttggatgtctccgttgtattacaatat 651
Score = 52.0 bits (26), Expect = 1e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 401 ccgcccaaccaccatttcctcatgcccatccagt 434
||||||||||||||||||||| | ||||||||||
Sbjct: 1 ccgcccaaccaccatttcctcctccccatccagt 34
>gb|CW151902.1|CW151902 104_552_11144196_148_36321_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144196, DNA
sequence
Length = 694
Score = 630 bits (318), Expect = e-179
Identities = 470/515 (91%), Gaps = 8/515 (1%)
Strand = Plus / Plus
Query: 494 ttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaag 553
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1 ttcttctttacagtcctaatcagcaatgttggtggcgcgggtgatgttagatctgtgaag 60
Query: 554 atcaaaggaacggagctaggatggctccctatgggccgcaactggggccaggtgtggcac 613
||||||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 61 atcaaaggaacagagttaggatggctctcgatgggccgcaattggggccaggtgtggcac 120
Query: 614 atcaactgtgacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaag 673
||||||||||||||||||||||| || || |||||||||||||||||||||||| |||||
Sbjct: 121 atcaactgtgacatgaggggacaacccctgtcgtttgagctcagctcaagcgatggcaag 180
Query: 674 acgctgaccagtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacgggg 733
|| || |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 181 acactcaccagtttcaacgttgtgcccaaggattgggagtatggcaagacatacacgggg 240
Query: 734 aagcagtttcttctgtagagaatggagtgccgcaagatcagcttacagttcctcattttt 793
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 241 aagcagtttcttctgtagagaat-gagtgccacaagatcagcttacagtttctcattttt 299
Query: 794 cttctgatcctacgagttcggccgtggtgtatgtatattcctctgcagaagaagcaatat 853
||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||
Sbjct: 300 gttctgatcctacgagttgggctgtgg----tgtatattcctctgcagaacaagcaatat 355
Query: 854 cgttattaggagaaaatcacttagtgcaggg-ctcagatagttactatggctcat-aacg 911
| ||||||||||||||| ||||||||||||| || ||||||||||| |||||||| || |
Sbjct: 356 cattattaggagaaaattacttagtgcagggcctaagatagttactctggctcataaatg 415
Query: 912 cattttcatgtacccttcatagttg-tctaaagaggcttgatgtatcattcaaaatagaa 970
| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 416 ctttttcatgtacccttcatagttgctctaaagaggcttgatgtatcattgaaaatagaa 475
Query: 971 ggccggattcgggtatgtccggagtattacaatat 1005
||||| ||| || | | |||| ||||||||||||
Sbjct: 476 ggccgaatttggatgtctccgttgtattacaatat 510
>gb|BF421232.1|BF421232 FM1_7_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 488
Score = 617 bits (311), Expect = e-175
Identities = 439/476 (92%), Gaps = 8/476 (1%)
Strand = Plus / Plus
Query: 503 acagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaagatcaaagga 562
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 acagtcctaatcagcaatgttggtggcgcgggtgatgttagatctgtgaagatcaaagga 60
Query: 563 acggagctaggatggctccctatgggccgcaactggggccaggtgtggcacatcaactgt 622
|| ||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 acagagttaggatggctctcgatgggccgcaattggggccaggtgtggcacatcaactgt 120
Query: 623 gacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaagacgctgacc 682
|||||||||||||| || || |||||||||||||||||||||||| ||||||| || |||
Sbjct: 121 gacatgaggggacaacccctgtcgtttgagctcagctcaagcgatggcaagacactcacc 180
Query: 683 agtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggggaagcagttt 742
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 181 agtttcaacgtcgtgcccaaggattgggagtatggcaagacatacacggggaaacagttt 240
Query: 743 cttctgtagagaatggagtgccgcaagatcagcttacagttcctcatttttcttctgatc 802
|||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||
Sbjct: 241 cttctgtagagaat-gagtgccacaagatcagcttacagtttctcatttttgttctgatc 299
Query: 803 ctacgagttcggccgtggtgtatgtatattcctctgcagaagaagcaatatcgttattag 862
||||||||| ||| |||| ||||||||||||||||||| |||||||||| |||||||
Sbjct: 300 ctacgagttgggctgtgg----tgtatattcctctgcagaacaagcaatatcattattag 355
Query: 863 gagaaaatcacttagtgcaggg-ctcagatagttactatggctcat-aacgcattttcat 920
|||||||| ||||||||||||| || ||||||||||| |||||||| || || |||||||
Sbjct: 356 gagaaaattacttagtgcagggcctaagatagttactctggctcataaatgctttttcat 415
Query: 921 gtacccttcatagttg-tctaaagaggcttgatgtatcattcaaaatagaaggccg 975
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 416 gtacccttcatagttgctctaaagaggcttgatgtatcattgaaaatagaaggccg 471
>gb|CF431288.1|CF431288 NIT1_5_F12.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA
clone NIT1_5_F12_A002 3', mRNA sequence
Length = 541
Score = 603 bits (304), Expect = e-170
Identities = 453/497 (91%), Gaps = 8/497 (1%)
Strand = Plus / Plus
Query: 512 atcagcaacgttggtggcgcgggtgatgttaggtctgtgaagatcaaaggaacggagcta 571
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct: 1 atcagcaatgttggtggcgcgggtgatgttagatctgtgaagatcaaaggaacagagtta 60
Query: 572 ggatggctccctatgggccgcaactggggccaggtgtggcacatcaactgtgacatgagg 631
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggatggctctcgatgggccgcaattggggccaggtgtggcacatcaactgtgacatgagg 120
Query: 632 ggacagcctctatcgtttgagctcagctcaagcgatagcaagacgctgaccagtttcaac 691
||||| || || |||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 121 ggacaacccctgtcgtttgagctcagctcaagcgatggcaagacactcaccagtttcaac 180
Query: 692 gtcgtgcccaaggattgggagttcggcaagacatacacggggaagcagtttcttctgtag 751
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttgtgcccaaggattgggagtatggcaagacatacacggggaagcagtttcttctgtag 240
Query: 752 agaatggagtgccgcaagatcagcttacagttcctcatttttcttctgatcctacgagtt 811
||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 241 agaat-gagtgccacaagatcagcttacagtttctcatttttgttctgatcctacgagtt 299
Query: 812 cggccgtggtgtatgtatattcctctgcagaagaagcaatatcgttattaggagaaaatc 871
||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 300 gggctgtgg----tgtatattcctctgcagaacaagcaatatcattattaggagaaaatt 355
Query: 872 acttagtgcaggg-ctcagatagttactatggctcat-aacgcattttcatgtacccttc 929
||||||||||||| || ||||||||||| |||||||| || || ||||||||||||||||
Sbjct: 356 acttagtgcagggcctaagatagttactctggctcataaatgctttttcatgtacccttc 415
Query: 930 atagttg-tctaaagaggcttgatgtatcattcaaaatagaaggccggattcgggtatgt 988
||||||| |||||||||||||||||||||||| |||||||||||||| ||| || | | |
Sbjct: 416 atagttgctctaaagaggcttgatgtatcattgaaaatagaaggccgaatttggatgtct 475
Query: 989 ccggagtattacaatat 1005
||| ||||||||||||
Sbjct: 476 ccgttgtattacaatat 492
>gb|BG050409.1|BG050409 FM1_53_G06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 491
Score = 597 bits (301), Expect = e-169
Identities = 450/494 (91%), Gaps = 8/494 (1%)
Strand = Plus / Plus
Query: 515 agcaacgttggtggcgcgggtgatgttaggtctgtgaagatcaaaggaacggagctagga 574
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct: 1 agcaatgttggtggcgcgggtgatgttagatctgtgaagatcaaaggaacagagttagga 60
Query: 575 tggctccctatgggccgcaactggggccaggtgtggcacatcaactgtgacatgagggga 634
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggctctcgatgggccgcaattggggccaggtgtggcacatcaactgtgacatgagggga 120
Query: 635 cagcctctatcgtttgagctcagctcaagcgatagcaagacgctgaccagtttcaacgtc 694
|| || || |||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 121 caacccctgtcgtttgagctcagctcaagcgatggcaagacactcaccagtttcaacgtc 180
Query: 695 gtgcccaaggattgggagttcggcaagacatacacggggaagcagtttcttctgtagaga 754
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 181 gtgcccaaggattgggagtatggcaagacatacacggggaaacagtttcttctgtagaga 240
Query: 755 atggagtgccgcaagatcagcttacagttcctcatttttcttctgatcctacgagttcgg 814
|| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||
Sbjct: 241 at-gagtgccacaagatcagcttacagtttctcatttttgttctgatcctacgagttggg 299
Query: 815 ccgtggtgtatgtatattcctctgcagaagaagcaatatcgttattaggagaaaatcact 874
| |||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct: 300 ctgtgg----tgtatattcctctgcagaacaagcaatatcattattaggagaaaattact 355
Query: 875 tagtgcaggg-ctcagatagttactatggctcat-aacgcattttcatgtacccttcata 932
|||||||||| || ||||||||||| |||||||| || || |||||||||||||||||||
Sbjct: 356 tagtgcagggcctaagatagttactctggctcataaatgctttttcatgtacccttcata 415
Query: 933 gttg-tctaaagaggcttgatgtatcattcaaaatagaaggccggattcgggtatgtccg 991
|||| |||||||||||||||||||||||| |||||||||||||| ||| || | | ||||
Sbjct: 416 gttgctctaaagaggcttgatgtatcattgaaaatagaaggccgaatttggatgtctccg 475
Query: 992 gagtattacaatat 1005
||||||||||||
Sbjct: 476 ttgtattacaatat 489
>gb|BG051375.1|BG051375 FM1_55_G05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 459
Score = 589 bits (297), Expect = e-166
Identities = 425/462 (91%), Gaps = 8/462 (1%)
Strand = Plus / Plus
Query: 510 taatcagcaacgttggtggcgcgggtgatgttaggtctgtgaagatcaaaggaacggagc 569
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 3 taatcagcaatgttggtggcgcgggtgatgttagatctgtgaagatcaaaggaacagagt 62
Query: 570 taggatggctccctatgggccgcaactggggccaggtgtggcacatcaactgtgacatga 629
||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 63 taggatggctctcgatgggccgcaattggggccaggtgtggcacatcaactgtgacatga 122
Query: 630 ggggacagcctctatcgtttgagctcagctcaagcgatagcaagacgctgaccagtttca 689
||||||| || || |||||||||||||||||||||||| ||||||| || ||||||||||
Sbjct: 123 ggggacaacccctgtcgtttgagctcagctcaagcgatggcaagacactcaccagtttca 182
Query: 690 acgtcgtgcccaaggattgggagttcggcaagacatacacggggaagcagtttcttctgt 749
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 183 acgtcgtgcccaaggattgggagtatggcaagacatacacggggaaacagtttcttctgt 242
Query: 750 agagaatggagtgccgcaagatcagcttacagttcctcatttttcttctgatcctacgag 809
||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 243 agagaat-gagtgccacaagatcagcttacagtttctcatttttgttctgatcctacgag 301
Query: 810 ttcggccgtggtgtatgtatattcctctgcagaagaagcaatatcgttattaggagaaaa 869
|| ||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 302 ttgggctgtgg----tgtatattcctctgcagaacaagcaatatcattattaggagaaaa 357
Query: 870 tcacttagtgcaggg-ctcagatagttactatggctcat-aacgcattttcatgtaccct 927
| ||||||||||||| || ||||||||||| |||||||| || || ||||||||||||||
Sbjct: 358 ttacttagtgcagggcctaagatagttactgtggctcataaatgctttttcatgtaccct 417
Query: 928 tcatagttg-tctaaagaggcttgatgtatcattcaaaatag 968
||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 418 tcatagttgctctaaagaggcttgatgtatcattgaaaatag 459
>gb|BF421314.1|BF421314 FM1_7_B08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 504
Score = 480 bits (242), Expect = e-133
Identities = 314/338 (92%), Gaps = 10/338 (2%)
Strand = Plus / Plus
Query: 60 ggcataccataccggcaccggcagcgagcagtcgggagccatggctccgccgctcctgct 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ggcagaccataccggcaccggcagcgagcagtcgggagccatggctccgccgctcctgct 133
Query: 120 cttcttcctcctcctccccctcctcacggccctcgctgacggacaccagcacctgtttct 179
|||| |||| ||||||| |||||||||| | |||||||||||||| || ||
Sbjct: 134 cttc---------ctcctcctcctcccggccctcgccgccggacaccagcacccgtc-ct 183
Query: 180 cctacggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccg 239
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 184 cctatggctcctccgcgctctccgagtggcgccccgccaaggcatcctactacgccgccg 243
Query: 240 accccgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggctacg 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 244 accccgaagacgccatcggtggggcgtgcgggttcggggatctggggaagcacgggtacg 303
Query: 300 ggatggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggct 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 304 ggatggcgacggtggggctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggct 363
Query: 360 gctacgaggtcaagtgcgtcgaggacctcaagcactgc 397
||||||||||||||||||||||||| |||||| |||||
Sbjct: 364 gctacgaggtcaagtgcgtcgaggatctcaagtactgc 401
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 391 gcactgcaacccgcccaaccaccatt 416
||||||||||||||||||||||||||
Sbjct: 479 gcactgcaacccgcccaaccaccatt 504
>gb|CW201862.1|CW201862 104_627_11184792_116_37108_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184792, DNA
sequence
Length = 701
Score = 468 bits (236), Expect = e-130
Identities = 309/332 (93%), Gaps = 1/332 (0%)
Strand = Plus / Minus
Query: 441 gtgttaagtgcctccgcgaaggtggtgtgaggttctccgtcaacggtcggcacttcttct 500
|||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 331 gtgttaagtgcctccgagaaggtggtgtcaggttctctgtcaatggtcggcacttcttct 272
Query: 501 tcacagtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaagatcaaag 560
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 271 ttacagtcctaatcagcaatgttggtggcgcgggtgatgttagatctgtgaagatcaaag 212
Query: 561 gaacggagctaggatggctccctatgggccgcaactggggccaggtgtggcacatcaact 620
|||| ||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct: 211 gaacagagttaggatggctctcgatgggccgcaattggggccaggtgtggcacatcaact 152
Query: 621 gtgacatgaggggacagcctctatcgtttgagctcagctcaagcgatagcaagacgctga 680
|||||||||||||||| || || |||||||||||||||||||||||| ||||||| || |
Sbjct: 151 gtgacatgaggggacaacccctgtcgtttgagctcagctcaagcgatggcaagacactca 92
Query: 681 ccagtttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggggaagcagt 740
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 91 ccagtttcaacgttgtgcccaaggattgggagtatggcaagacatacacggggaagcagt 32
Query: 741 ttcttctgtagagaatggagtgccgcaagatc 772
|||||||||||||||| ||||||| |||||||
Sbjct: 31 ttcttctgtagagaat-gagtgccacaagatc 1
>gb|CN146336.1|CN146336 WOUND1_39_D07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D07_A002 5', mRNA sequence
Length = 741
Score = 456 bits (230), Expect = e-126
Identities = 345/383 (90%), Gaps = 19/383 (4%)
Strand = Plus / Plus
Query: 17 ctcactccttcctctcccagtccccagctt--caccgaggcatacggcataccataccgg 74
|||||||||||||| |||| |||||||||| |||||| |||| ||||||||||
Sbjct: 35 ctcactccttcctcccccactccccagcttcacaccga-------ggcagaccataccgg 87
Query: 75 caccggcagcgagcagtcgggagccatggctccgccgctcctgctcttcttcctcctcct 134
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 88 caccggcagcgagcagtcgggagccatggctccgccgctcctgctcttcctcttcctcct 147
Query: 135 ccccctcctcacggccctcgctgacggacaccagcacctgtttctcctacggctcctccg 194
|| |||||||||| | |||||||||||||| | | |||||| || || ||||
Sbjct: 148 cc---------cggccctcgccgccggacaccagcacccg-tcctcctatggttcgtccg 197
Query: 195 cgctctccgattggcgccccgccaaggcatcctactacgccgccgaccccgaagacgcca 254
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cgctctccgagtggcgccccgccaaggcatcctactacgccgccgaccccgaagacgcca 257
Query: 255 tcggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgg 314
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 258 tcggtggggcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgg 317
Query: 315 ggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagt 374
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtcaagt 377
Query: 375 gcgtcgaggacctcaagcactgc 397
|||||||||| ||| || |||||
Sbjct: 378 gcgtcgaggatctcgagtactgc 400
Score = 220 bits (111), Expect = 2e-055
Identities = 168/187 (89%)
Strand = Plus / Plus
Query: 420 tcatgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccg 479
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 555 tcatgcccatccagtaccgccgtgttaagtgcctccaagaaggtggtgtcaggttctctg 614
Query: 480 tcaacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatg 539
|||| ||||||||| ||||||| ||||||||||||||||| ||| || || | ||||||
Sbjct: 615 tcaatggtcggcacatcttctttacagtcctaatcagcaatgttagtagcacatgtgatg 674
Query: 540 ttaggtctgtgaagatcaaaggaacggagctaggatggctccctatgggccgcaactggg 599
|||| |||||||||||||||||||| ||| ||||||||||| | ||||||||||| ||||
Sbjct: 675 ttagatctgtgaagatcaaaggaacagagttaggatggctctcgatgggccgcaattggg 734
Query: 600 gccaggt 606
|||||||
Sbjct: 735 gccaggt 741
Score = 69.9 bits (35), Expect = 5e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 392 cactgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 479 cactgcaacccgcccaaccaccatttcctcctccccatccagt 521
>gb|CX607108.1|CX607108 ANR1_6_F04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_F04_A002 5', mRNA sequence
Length = 794
Score = 456 bits (230), Expect = e-126
Identities = 345/383 (90%), Gaps = 19/383 (4%)
Strand = Plus / Plus
Query: 17 ctcactccttcctctcccagtccccagctt--caccgaggcatacggcataccataccgg 74
|||||||||||||| |||| |||||||||| |||||| |||| ||||||||||
Sbjct: 43 ctcactccttcctcccccactccccagcttcacaccga-------ggcagaccataccgg 95
Query: 75 caccggcagcgagcagtcgggagccatggctccgccgctcctgctcttcttcctcctcct 134
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 96 caccggcagcgagcagtcgggagccatggctccgccgctcctgctcttcctcttcctcct 155
Query: 135 ccccctcctcacggccctcgctgacggacaccagcacctgtttctcctacggctcctccg 194
|| |||||||||| | |||||||||||||| | | |||||| || || ||||
Sbjct: 156 cc---------cggccctcgccgccggacaccagcacccg-tcctcctatggttcgtccg 205
Query: 195 cgctctccgattggcgccccgccaaggcatcctactacgccgccgaccccgaagacgcca 254
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cgctctccgagtggcgccccgccaaggcatcctactacgccgccgaccccgaagacgcca 265
Query: 255 tcggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgg 314
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 266 tcggtggggcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgg 325
Query: 315 ggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagt 374
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtcaagt 385
Query: 375 gcgtcgaggacctcaagcactgc 397
||||| |||| |||||| |||||
Sbjct: 386 gcgtcaaggatctcaagtactgc 408
Score = 341 bits (172), Expect = 8e-092
Identities = 217/232 (93%)
Strand = Plus / Plus
Query: 420 tcatgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccg 479
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 563 tcatgcccatccagtaccgccgtgttaagtgcctccgagaaggtggtgtcaggttctctg 622
Query: 480 tcaacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatg 539
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 623 tcaatggtcggcacttcttctttacagtcctaatcagcaatgttggtggcgcgggtgatg 682
Query: 540 ttaggtctgtgaagatcaaaggaacggagctaggatggctccctatgggccgcaactggg 599
|||| |||||||||||||||||||| ||| ||||||||||| | ||||||||||| ||||
Sbjct: 683 ttagatctgtgaagatcaaaggaacagagttaggatggctctcgatgggccgcaattggg 742
Query: 600 gccaggtgtggcacatcaactgtgacatgaggggacagcctctatcgtttga 651
||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 743 gccaggtgtggcacatcaactgtgacatgaggggacaacccctgtcgtttga 794
Score = 69.9 bits (35), Expect = 5e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 392 cactgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 487 cactgcaacccgcccaaccaccatttcctcctccccatccagt 529
>gb|BG051053.1|BG051053 FM1_55_G05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 367
Score = 428 bits (216), Expect = e-118
Identities = 282/304 (92%), Gaps = 10/304 (3%)
Strand = Plus / Plus
Query: 60 ggcataccataccggcaccggcagcgagcagtcgggagccatggctccgccgctcctgct 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ggcagaccataccggcaccggcagcgagcagtcgggagccatggctccgccgctcctgct 133
Query: 120 cttcttcctcctcctccccctcctcacggccctcgctgacggacaccagcacctgtttct 179
|||| |||| ||||||| |||||||||| | |||||||||||||| || ||
Sbjct: 134 cttc---------ctcctcctcctcccggccctcgccgccggacaccagcacccgtc-ct 183
Query: 180 cctacggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccg 239
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 184 cctatggctcctccgcgctctccgagtggcgccccgccaaggcatcctactacgccgccg 243
Query: 240 accccgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggctacg 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 244 accccgaagacgccatcggtggggcgtgcgggttcggggatctggggaagcacgggtacg 303
Query: 300 ggatggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggct 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 304 ggatggcgacggtggggctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggct 363
Query: 360 gcta 363
||||
Sbjct: 364 gcta 367
>gb|BG050340.1|BG050340 FM1_53_G06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 353
Score = 400 bits (202), Expect = e-109
Identities = 268/290 (92%), Gaps = 10/290 (3%)
Strand = Plus / Plus
Query: 60 ggcataccataccggcaccggcagcgagcagtcgggagccatggctccgccgctcctgct 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ggcagaccataccggcaccggcagcgagcagtcgggagccatggctccgccgctcctgct 133
Query: 120 cttcttcctcctcctccccctcctcacggccctcgctgacggacaccagcacctgtttct 179
|||| |||| ||||||| |||||||||| | |||||||||||||| || ||
Sbjct: 134 cttc---------ctcctcctcctcccggccctcgccgccggacaccagcacccgtc-ct 183
Query: 180 cctacggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccg 239
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 184 cctatggctcctccgcgctctccgagtggcgccccgccaaggcatcctactacgccgccg 243
Query: 240 accccgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggctacg 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 244 accccgaagacgccatcggtggggcgtgcgggttcggggatctggggaagcacgggtacg 303
Query: 300 ggatggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcg 349
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 304 ggatggcgacggtggggctgagcacggcgctgttcgagcgcggcgcggcg 353
>gb|CW260111.1|CW260111 104_726_11228790_116_35191_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228790, DNA
sequence
Length = 615
Score = 240 bits (121), Expect = 2e-061
Identities = 136/141 (96%)
Strand = Plus / Plus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 421 ggtggggcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 480
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 540
Query: 377 gtcgaggacctcaagcactgc 397
|||||||| |||||| |||||
Sbjct: 541 gtcgaggatctcaagtactgc 561
Score = 155 bits (78), Expect = 1e-035
Identities = 112/122 (91%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 138 cctcctcacggccctcgctgacggacaccagcacctgtttctcctacggctcctccgcgc 197
||||||| |||||||||| | |||||||||||||| || |||||| || || |||||||
Sbjct: 25 cctcctcccggccctcgccgccggacaccagcacccgtc-ctcctatggttcgtccgcgc 83
Query: 198 tctccgattggcgccccgccaaggcatcctactacgccgccgaccccgaagacgccatcg 257
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tctccgagtggcgccccgccaaggcatcctactacgccgccgaccccgaagacgccatcg 143
Query: 258 gt 259
||
Sbjct: 144 gt 145
>gb|CW260112.1|CW260112 104_726_11228790_148_35187_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228790, DNA
sequence
Length = 687
Score = 240 bits (121), Expect = 2e-061
Identities = 136/141 (96%)
Strand = Plus / Minus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 500 ggtggggcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 441
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 381
Query: 377 gtcgaggacctcaagcactgc 397
|||||||| |||||| |||||
Sbjct: 380 gtcgaggatctcaagtactgc 360
Score = 69.9 bits (35), Expect = 5e-010
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 392 cactgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 281 cactgcaacccgcccaaccaccatttcctcctccccatccagt 239
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 420 tcatgcccatccagtaccgccg 441
||||||||||||||||||||||
Sbjct: 205 tcatgcccatccagtaccgccg 184
>gb|CW406941.1|CW406941 fsbb001f100d03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100d03, DNA
sequence
Length = 736
Score = 240 bits (121), Expect = 2e-061
Identities = 136/141 (96%)
Strand = Plus / Minus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 289 ggtggggcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 230
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ctgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 170
Query: 377 gtcgaggacctcaagcactgc 397
|||||||| |||||| |||||
Sbjct: 169 gtcgaggatctcaagtactgc 149
Score = 186 bits (94), Expect = 3e-045
Identities = 160/182 (87%), Gaps = 10/182 (5%)
Strand = Plus / Minus
Query: 78 cggcagcgagcagtcgggagccatggctccgccgctcctgctcttcttcctcctcctccc 137
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 736 cggcagcgagcagtcgggagccatggctccgccgctcctgctctt---------cctctt 686
Query: 138 cctcctcacggccctcgctgacggacaccagcacctgtttctcctacggctcctccgcgc 197
||||||| ||||| |||| | |||||||||||||| || |||||| || || |||||||
Sbjct: 685 cctcctcccggccttcgccgccggacaccagcacccgtc-ctcctatggttcgtccgcgc 627
Query: 198 tctccgattggcgccccgccaaggcatcctactacgccgccgaccccgaagacgccatcg 257
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctccgagtggcgccccgccaaggcatcctactacgccgccgaccccgaagacgccatcg 567
Query: 258 gt 259
||
Sbjct: 566 gt 565
Score = 69.9 bits (35), Expect = 5e-010
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 392 cactgcaacccgcccaaccaccatttcctcatgcccatccagt 434
|||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 70 cactgcaacccgcccaaccaccatttcctcctccccatccagt 28
>gb|CL181626.1|CL181626 104_392_10896876_116_31926_252 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896876, DNA
sequence
Length = 409
Score = 230 bits (116), Expect = 2e-058
Identities = 213/245 (86%), Gaps = 19/245 (7%)
Strand = Plus / Plus
Query: 17 ctcactccttcctctcccagtccccagctt--caccgaggcatacggcataccataccgg 74
|||||||||||||| |||| |||||||||| |||||| |||| ||||||||||
Sbjct: 145 ctcactccttcctcccccactccccagcttcacaccga-------ggcagaccataccgg 197
Query: 75 caccggcagcgagcagtcgggagccatggctccgccgctcctgctcttcttcctcctcct 134
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 198 caccggcagcgagcagtcgggagccatggctccgccgctcctgctcttcctcttcctcct 257
Query: 135 ccccctcctcacggccctcgctgacggacaccagcacctgtttctcctacggctcctccg 194
|| |||||||||| | |||||||||||||| | | |||||| || || ||||
Sbjct: 258 cc---------cggccctcgccgccggacaccagcacccg-tcctcctatggttcgtccg 307
Query: 195 cgctctccgattggcgccccgccaaggcatcctactacgccgccgaccccgaagacgcca 254
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cgctctccgagtggcgccccgccaaggcatcctactacgccgccgaccccgaagacgcca 367
Query: 255 tcggt 259
|||||
Sbjct: 368 tcggt 372
>gb|CW406940.1|CW406940 fsbb001f100d03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100d03, DNA
sequence
Length = 665
Score = 230 bits (116), Expect = 2e-058
Identities = 213/245 (86%), Gaps = 19/245 (7%)
Strand = Plus / Plus
Query: 17 ctcactccttcctctcccagtccccagctt--caccgaggcatacggcataccataccgg 74
|||||||||||||| |||| |||||||||| |||||| |||| ||||||||||
Sbjct: 86 ctcactccttcctcccccactccccagcttcacaccga-------ggcagaccataccgg 138
Query: 75 caccggcagcgagcagtcgggagccatggctccgccgctcctgctcttcttcctcctcct 134
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 139 caccggcagcgagcagtcgggagccatggctccgccgctcctgctcttcctcttcctcct 198
Query: 135 ccccctcctcacggccctcgctgacggacaccagcacctgtttctcctacggctcctccg 194
|| |||||||||| | |||||||||||||| | | |||||| || || ||||
Sbjct: 199 cc---------cggccctcgccgccggacaccagcacccg-tcctcctatggttcgtccg 248
Query: 195 cgctctccgattggcgccccgccaaggcatcctactacgccgccgaccccgaagacgcca 254
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cgctctccgagtggcgccccgccaaggcatcctactacgccgccgaccccgaagacgcca 308
Query: 255 tcggt 259
|||||
Sbjct: 309 tcggt 313
Score = 137 bits (69), Expect = 2e-030
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 589 ggtggggcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 648
Query: 317 ctgagcacggcgctgtt 333
|||||||||||||||||
Sbjct: 649 ctgagcacggcgctgtt 665
>gb|CL181627.1|CL181627 104_392_10896876_148_31925_252 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896876, DNA
sequence
Length = 621
Score = 222 bits (112), Expect = 5e-056
Identities = 178/200 (89%), Gaps = 10/200 (5%)
Strand = Plus / Minus
Query: 60 ggcataccataccggcaccggcagcgagcagtcgggagccatggctccgccgctcctgct 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggcagaccataccggcaccggcagcgagcagtcgggagccatggctccgccgctcctgct 537
Query: 120 cttcttcctcctcctccccctcctcacggccctcgctgacggacaccagcacctgtttct 179
||| |||| ||||||| |||||||||| | |||||||||||||| || ||
Sbjct: 536 ctt---------cctcttcctcctcccggccctcgccgccggacaccagcacccgtc-ct 487
Query: 180 cctacggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgccg 239
|||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 486 cctatggttcgtccgcgctctccgagtggcgccccgccaaggcatcctactacgccgccg 427
Query: 240 accccgaagacgccatcggt 259
||||||||||||||||||||
Sbjct: 426 accccgaagacgccatcggt 407
Score = 222 bits (112), Expect = 5e-056
Identities = 124/128 (96%)
Strand = Plus / Minus
Query: 257 ggtggggcgtgcgggttcggggatctggggaaacacggctacgggatggcgacggtgggg 316
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 131 ggtggggcgtgcgggttcggggatctggggaagcacgggtacgggatggcgacggtgggg 72
Query: 317 ctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtgc 376
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 71 ctgagcacggcgctgttcgagcgcggcgcggcgtgcagcggctgctacgaggtcaagtgc 12
Query: 377 gtcgagga 384
||||||||
Sbjct: 11 gtcgagga 4
>gb|CF073210.1|CF073210 FE1_28_E04.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_28_E04_A002 5', mRNA sequence
Length = 247
Score = 198 bits (100), Expect = 7e-049
Identities = 166/184 (90%), Gaps = 3/184 (1%)
Strand = Plus / Minus
Query: 825 tgtatattcctctgcagaagaagcaatatcgttattaggagaaaatcacttagtgcaggg 884
||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct: 235 tgtatattcctctgcagaacaagcaatatcattattaggagaaaattacttagtgcaggg 176
Query: 885 -ctcagatagttactatggctcat-aacgcattttcatgtacccttcatagttg-tctaa 941
|| ||||||||||| |||||||| || || ||||||||||||||||||||||| |||||
Sbjct: 175 cctaagatagttactctggctcataaatgctttttcatgtacccttcatagttgctctaa 116
Query: 942 agaggcttgatgtatcattcaaaatagaaggccggattcgggtatgtccggagtattaca 1001
||||||||||||||||||| |||||||||||||| ||| || | | |||| ||||||||
Sbjct: 115 agaggcttgatgtatcattgaaaatagaaggccgaatttggatgtctccgttgtattaca 56
Query: 1002 atat 1005
||||
Sbjct: 55 atat 52
>gb|CW043252.1|CW043252 104_278_10507811_114_30254 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507811, DNA
sequence
Length = 418
Score = 153 bits (77), Expect = 4e-035
Identities = 140/161 (86%), Gaps = 10/161 (6%)
Strand = Plus / Plus
Query: 99 catggctccgccgctcctgctcttcttcctcctcctccccctcctcacggccctcgctga 158
||||||||||||||||||||||||| || ||||||||| ||| |||||| |
Sbjct: 1 catggctccgccgctcctgctcttcctcttcctcctcc---------cgggcctcgccgc 51
Query: 159 cggacaccagcacctgtttctcctacggctcctccgcgctctccgattggcgccccgcca 218
|||||||||||||| | | |||||| || || |||||||||||||| |||||||||||||
Sbjct: 52 cggacaccagcacccg-tcctcctatggttcgtccgcgctctccgagtggcgccccgcca 110
Query: 219 aggcatcctactacgccgccgaccccgaagacgccatcggt 259
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aggcatcctactacgccgccgaccccgaagacgccatcggt 151
>gb|CW201863.1|CW201863 104_627_11184792_148_37107_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184792, DNA
sequence
Length = 677
Score = 129 bits (65), Expect = 6e-028
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 441 gtgttaagtgcctccgcgaaggtggtgtgaggttctccgtcaacggtcggcacttcttct 500
|||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 589 gtgttaagtgcctccgagaaggtggtgtcaggttctctgtcaatggtcggcacttcttct 648
Query: 501 tcacagtcctaatcagcaacgttggtggc 529
| ||||||||||||||||| |||||||||
Sbjct: 649 ttacagtcctaatcagcaatgttggtggc 677
>gb|CW149259.1|CW149259 104_548_11142395_116_36285_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142395, DNA
sequence
Length = 699
Score = 58.0 bits (29), Expect = 2e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 441 gtgttaagtgcctccgcgaaggtggtgtgaggttctc 477
|||||||||||||||| ||||||||||| ||||||||
Sbjct: 38 gtgttaagtgcctccgagaaggtggtgtcaggttctc 2
>gb|CW088882.1|CW088882 104_434_10948378_115_32585_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948378, DNA
sequence
Length = 710
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 308 acggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgag 367
|||| |||||||||| |||||||||| | |||||| || ||||||||||||||||||
Sbjct: 504 acggcggggctgagcgcggcgctgttcggccgcggcagcgcctgcggcggctgctacgag 563
>gb|CW096538.1|CW096538 104_462_11001950_116_34349_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001950, DNA
sequence
Length = 674
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 308 acggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgag 367
|||| |||||||||| |||||||||| | |||||| || ||||||||||||||||||
Sbjct: 197 acggcggggctgagcgcggcgctgttcggccgcggcagcgcctgcggcggctgctacgag 138
>gb|CW179534.1|CW179534 104_593_11160150_148_36628_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160150, DNA
sequence
Length = 669
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 308 acggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgag 367
|||| |||||||||| |||||||||| | |||||| || ||||||||||||||||||
Sbjct: 108 acggcggggctgagcgcggcgctgttcggccgcggcagcgcctgcggcggctgctacgag 167
>gb|CW421780.1|CW421780 fsbb001f130l24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f130l24, DNA
sequence
Length = 743
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 308 acggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgag 367
|||| |||||||||| |||||||||| | |||||| || ||||||||||||||||||
Sbjct: 368 acggcggggctgagcgcggcgctgttcggccgcggcagcgcctgcggcggctgctacgag 309
>gb|CX620549.1|CX620549 GABR1_52_C02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_52_C02_A002 5', mRNA sequence
Length = 545
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgag 367
|||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct: 268 gctgagcacggcgctgttcaacggcggcgcggcgtgcgggtcctgctacgag 319
>gb|CW065394.1|CW065394 104_312_10523123_114_30128 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523123, DNA
sequence
Length = 534
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 cttcttcctcctcctccccctcc 142
|||||||||||||||||||||||
Sbjct: 182 cttcttcctcctcctccccctcc 204
>gb|CW088011.1|CW088011 104_432_10947971_116_32556_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947971, DNA
sequence
Length = 686
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 cttcttcctcctcctccccctcc 142
|||||||||||||||||||||||
Sbjct: 222 cttcttcctcctcctccccctcc 244
>gb|CW158383.1|CW158383 104_564_11148789_148_36396_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11148789, DNA
sequence
Length = 677
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 471 tcttcttcctcctcctcctcctcctca 445
>gb|CW217181.1|CW217181 104_650_11195518_148_37135_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195518, DNA
sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 35 tcttcttcctcctcctcctcctcctca 61
Score = 40.1 bits (20), Expect = 0.41
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 122 tcttcctcctcctccccctcctca 145
||||||||||||||| ||||||||
Sbjct: 65 tcttcctcctcctcctcctcctca 88
>gb|CW222666.1|CW222666 104_658_11202497_148_37178_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202497, DNA
sequence
Length = 705
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 17 tcttcttcctcctcctcctcctcctca 43
Score = 40.1 bits (20), Expect = 0.41
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 122 tcttcctcctcctccccctcctca 145
||||||||||||||| ||||||||
Sbjct: 47 tcttcctcctcctcctcctcctca 70
>gb|CW275672.1|CW275672 104_749_11405085_148_35392_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405085, DNA
sequence
Length = 485
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 195 tcttcttcctcctcctcctcctcctca 221
Score = 40.1 bits (20), Expect = 0.41
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 122 tcttcctcctcctccccctcctca 145
||||||||||||||| ||||||||
Sbjct: 225 tcttcctcctcctcctcctcctca 248
>gb|CW334545.1|CW334545 104_833_11482559_116_36074_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482559, DNA
sequence
Length = 584
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 61 tcttcttcctcctcctcctcctcctca 87
>gb|CW361404.1|CW361404 fsbb001f029p09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029p09, DNA
sequence
Length = 693
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 cttcttcctcctcctccccctcc 142
|||||||||||||||||||||||
Sbjct: 394 cttcttcctcctcctccccctcc 416
>gb|CW385608.1|CW385608 fsbb001f069c11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f069c11, DNA
sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 118 ctcttcttcctcctcctccccctcctc 144
||||||||||||||||||| |||||||
Sbjct: 49 ctcttcttcctcctcctcctcctcctc 75
>gb|CW416554.1|CW416554 fsbb001f117c14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f117c14, DNA
sequence
Length = 706
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 113 tcttcttcctcctcctcctcctcctca 139
Score = 40.1 bits (20), Expect = 0.41
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 122 tcttcctcctcctccccctcctca 145
||||||||||||||| ||||||||
Sbjct: 143 tcttcctcctcctcctcctcctca 166
>gb|BF588017.1|BF588017 FM1_35_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 104
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 118 ctcttcttcctcctcctccccctcctc 144
|||||||||||||| ||||||||||||
Sbjct: 92 ctcttcttcctcctactccccctcctc 66
>gb|BI140972.1|BI140972 IP1_41_F01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 103 tcttcttcctcctcctcctcctcctca 129
>gb|BI351277.1|BI351277 IP1_69_D08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 241
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 110 tcttcttcctcctcctcctcctcctca 136
>gb|BM318487.1|BM318487 PI1_14_B07.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 477
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 115 tcttcttcctcctcctcctcctcctca 141
>gb|CD425687.1|CD425687 SA1_13_A05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_13_A05_A002 5', mRNA sequence
Length = 578
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 118 tcttcttcctcctcctcctcctcctca 144
>gb|CD426007.1|CD426007 SA1_15_A05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_15_A05_A002 5', mRNA sequence
Length = 668
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 117 tcttcttcctcctcctcctcctcctca 143
>gb|CF073187.1|CF073187 FE1_28_B10.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_28_B10_A002 5', mRNA sequence
Length = 579
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 121 tcttcttcctcctcctcctcctcctca 147
>gb|CN127385.1|CN127385 RHOH1_22_E10.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_E10_A002 5', mRNA sequence
Length = 834
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 107 tcttcttcctcctcctcctcctcctca 133
>gb|CN129162.1|CN129162 RHOH1_33_H01.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_33_H01_A002 5', mRNA sequence
Length = 810
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 107 tcttcttcctcctcctcctcctcctca 133
>gb|CN143869.1|CN143869 WOUND1_18_H02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_18_H02_A002 5', mRNA sequence
Length = 754
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 101 tcttcttcctcctcctcctcctcctca 127
>gb|CX619758.1|CX619758 GABR1_47_D07.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_47_D07_A002 5', mRNA sequence
Length = 225
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 103 tcttcttcctcctcctcctcctcctca 129
>gb|BZ626552.1|BZ626552 ih47a04.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih47a04 5', DNA sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 379 tcttcttcctcctcctcctcctcctc 354
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 332,798
Number of Sequences: 832831
Number of extensions: 332798
Number of successful extensions: 110542
Number of sequences better than 0.5: 201
Number of HSP's better than 0.5 without gapping: 171
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 109824
Number of HSP's gapped (non-prelim): 465
length of query: 1061
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1041
effective length of database: 474,703,049
effective search space: 494165874009
effective search space used: 494165874009
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)