BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478337.2.1
(729 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW433265.1|CW433265 fsbb001f148g13f0 Sorghum methylation... 418 e-115
gb|CX613415.1|CX613415 GABR1_8_B11.b1_A002 GA- or brassinol... 418 e-115
gb|BZ349112.1|BZ349112 hq87c03.g1 WGS-SbicolorF (JM107 adap... 400 e-110
gb|CL165129.1|CL165129 104_359_10808375_114_31816_359 Sorgh... 400 e-110
gb|CW204078.1|CW204078 104_631_11186348_148_37094_066 Sorgh... 400 e-110
gb|CW402616.1|CW402616 fsbb001f093p05k0 Sorghum methylation... 400 e-110
gb|BE357973.1|BE357973 DG1_23_H03.g1_A002 Dark Grown 1 (DG1... 400 e-110
gb|CD432496.1|CD432496 ETH1_30_C04.b1_A002 Ethylene-treated... 400 e-110
gb|CD462510.1|CD462510 ETH1_38_D10.b1_A002 Ethylene-treated... 400 e-110
gb|DN552513.1|DN552513 pSHR-RT-A-H1_H09_C105 pSHR Sorghum h... 385 e-105
gb|CD428756.1|CD428756 ETH1_36_H11.b1_A002 Ethylene-treated... 379 e-103
gb|CD233638.1|CD233638 SS1_3_G02.b1_A012 Salt-stressed seed... 373 e-101
gb|CN125001.1|CN125001 RHOH1_8_F08.b1_A002 Acid- and alkali... 371 e-101
gb|CD230488.1|CD230488 SS1_44_B08.b1_A012 Salt-stressed see... 327 8e-088
gb|CD231800.1|CD231800 SS1_30_D03.b1_A012 Salt-stressed see... 321 5e-086
gb|BF656823.1|BF656823 OV2_23_D07.g1_A002 Ovary 2 (OV2) Sor... 307 8e-082
gb|CN128146.1|CN128146 RHOH1_27_G06.b1_A002 Acid- and alkal... 283 1e-074
gb|CN128815.1|CN128815 RHOH1_31_F05.g1_A002 Acid- and alkal... 248 6e-064
gb|CN125086.1|CN125086 RHOH1_8_F08.g1_A002 Acid- and alkali... 188 5e-046
gb|CD229975.1|CD229975 SS1_40_F09.b1_A012 Salt-stressed see... 170 1e-040
gb|BG159238.1|BG159238 OV2_5_B04.g1_A002 Ovary 2 (OV2) Sorg... 167 2e-039
gb|CN130578.1|CN130578 RHOH1_42_A01.g1_A002 Acid- and alkal... 167 2e-039
gb|BI099614.1|BI099614 IP1_44_E02.g1_A002 Immature pannicle... 145 7e-033
gb|CW477920.1|CW477920 fsbb001f235i02f0 Sorghum methylation... 119 4e-025
gb|BI099462.1|BI099462 IP1_42_E02.g1_A002 Immature pannicle... 119 4e-025
gb|CW253166.1|CW253166 104_716_11224935_116_35104_054 Sorgh... 117 1e-024
gb|CW376698.1|CW376698 fsbb001f054l06f0 Sorghum methylation... 117 1e-024
gb|CW480555.1|CW480555 fsbb001f239k22f0 Sorghum methylation... 117 1e-024
gb|CD210102.1|CD210102 HS1_57_F11.b1_A012 Heat-shocked seed... 117 1e-024
gb|CL171634.1|CL171634 104_373_10889563_116_31777_235 Sorgh... 105 6e-021
gb|CD221661.1|CD221661 CCC1_70_E11.b1_A007 Callus culture/c... 105 6e-021
gb|CN126050.1|CN126050 RHOH1_14_H04.g1_A002 Acid- and alkal... 105 6e-021
gb|CN128214.1|CN128214 RHOH1_27_G06.g1_A002 Acid- and alkal... 105 6e-021
gb|BE361244.1|BE361244 DG1_70_C10.g1_A002 Dark Grown 1 (DG1... 103 2e-020
gb|BG932946.1|BG932946 DG1_69_C11.g1_A002 Dark Grown 1 (DG1... 103 2e-020
gb|CF427028.1|CF427028 PH1_3_A04.b1_A002 Phosphorous-defici... 103 2e-020
gb|CN123868.1|CN123868 RHOH1_1_F04.b1_A002 Acid- and alkali... 103 2e-020
gb|BZ780437.1|BZ780437 ii12c06.b1 WGS-SbicolorF (DH5a methy... 96 5e-018
gb|CW450105.1|CW450105 fsbb001f188j04f0 Sorghum methylation... 96 5e-018
gb|CN128898.1|CN128898 RHOH1_32_F11.b1_A002 Acid- and alkal... 96 5e-018
gb|CN128978.1|CN128978 RHOH1_32_F11.g1_A002 Acid- and alkal... 96 5e-018
gb|BE357900.1|BE357900 DG1_23_H03.b1_A002 Dark Grown 1 (DG1... 88 1e-015
gb|CD221639.1|CD221639 CCC1_70_G11.b1_A007 Callus culture/c... 88 1e-015
gb|CN126455.1|CN126455 RHOH1_17_F06.b1_A002 Acid- and alkal... 88 1e-015
gb|CN128728.1|CN128728 RHOH1_31_F05.b1_A002 Acid- and alkal... 86 5e-015
gb|CD206178.1|CD206178 HS1_21_C02.b1_A012 Heat-shocked seed... 80 3e-013
gb|CD220424.1|CD220424 CCC1_67_F12.b1_A007 Callus culture/c... 80 3e-013
gb|CN131734.1|CN131734 OX1_2_B01.b1_A002 Oxidatively-stress... 80 3e-013
gb|CW133289.1|CW133289 104_517_11116679_148_34812_096 Sorgh... 76 5e-012
gb|CW396909.1|CW396909 fsbb001f085j02k0 Sorghum methylation... 72 8e-011
gb|BG048512.1|BG048512 OV1_14_E03.g2_A002 Ovary 1 (OV1) Sor... 72 8e-011
gb|CD219482.1|CD219482 CCC1_57_C04.b1_A007 Callus culture/c... 72 8e-011
gb|CD226829.1|CD226829 CCC1_48_E12.b1_A007 Callus culture/c... 72 8e-011
gb|CW054610.1|CW054610 104_295_10516628_115_30179 Sorghum m... 70 3e-010
gb|CW140343.1|CW140343 104_530_11135731_148_34916_066 Sorgh... 70 3e-010
gb|CW417495.1|CW417495 fsbb001f120i17f0 Sorghum methylation... 70 3e-010
gb|CW417496.1|CW417496 fsbb001f120i17k0 Sorghum methylation... 70 3e-010
gb|CW428522.1|CW428522 fsbb001f141e10k0 Sorghum methylation... 70 3e-010
gb|CW454420.1|CW454420 fsbb001f198n16k0 Sorghum methylation... 70 3e-010
gb|CW090039.1|CW090039 104_435_10949053_116_32598_051 Sorgh... 66 5e-009
gb|CW268308.1|CW268308 104_739_11401215_116_35306_064 Sorgh... 64 2e-008
gb|CX607987.1|CX607987 ANR1_32_A06.b1_A002 Anaerobic roots ... 64 2e-008
gb|CW115055.1|CW115055 104_490_11106333_148_34588_095 Sorgh... 62 8e-008
gb|CW323837.1|CW323837 104_818_11476843_116_35904_078 Sorgh... 62 8e-008
gb|BE360318.1|BE360318 DG1_62_E04.g1_A002 Dark Grown 1 (DG1... 62 8e-008
gb|CD431147.1|CD431147 ETH1_7_B06.b1_A002 Ethylene-treated ... 62 8e-008
gb|CF427057.1|CF427057 PH1_3_D05.b1_A002 Phosphorous-defici... 62 8e-008
gb|CF429158.1|CF429158 PH1_20_E04.b1_A002 Phosphorous-defic... 62 8e-008
gb|CF429637.1|CF429637 PH1_23_B04.b1_A002 Phosphorous-defic... 62 8e-008
gb|CN125883.1|CN125883 RHOH1_14_A01.b1_A002 Acid- and alkal... 62 8e-008
gb|CN125960.1|CN125960 RHOH1_14_H04.b1_A002 Acid- and alkal... 62 8e-008
gb|CN126589.1|CN126589 RHOH1_18_C01.b1_A002 Acid- and alkal... 62 8e-008
gb|CN126677.1|CN126677 RHOH1_18_C01.g1_A002 Acid- and alkal... 62 8e-008
gb|CN129415.1|CN129415 RHOH1_35_G04.b3_A002 Acid- and alkal... 62 8e-008
gb|CN129456.1|CN129456 RHOH1_35_B11.g1_A002 Acid- and alkal... 62 8e-008
gb|CN131170.1|CN131170 RHOH1_46_G08.b1_A002 Acid- and alkal... 62 8e-008
gb|CN131258.1|CN131258 RHOH1_46_G08.g1_A002 Acid- and alkal... 62 8e-008
gb|CN135165.1|CN135165 OX1_31_B04.b1_A002 Oxidatively-stres... 62 8e-008
gb|CX606110.1|CX606110 ANR1_1_E07.b1_A002 Anaerobic roots S... 62 8e-008
gb|CX606202.1|CX606202 ANR1_1_E07.g1_A002 Anaerobic roots S... 62 8e-008
gb|CX609868.1|CX609868 ANR1_15_F01.b1_A002 Anaerobic roots ... 62 8e-008
gb|CX609949.1|CX609949 ANR1_15_F01.g1_A002 Anaerobic roots ... 62 8e-008
gb|CX610369.1|CX610369 ANR1_18_F11.b1_A002 Anaerobic roots ... 62 8e-008
gb|BG739393.1|BG739393 EM1_82_D06.g1_A002 Embryo 1 (EM1) So... 60 3e-007
gb|CN146289.1|CN146289 WOUND1_39_H03.b1_A002 Wounded leaves... 58 1e-006
gb|CL191208.1|CL191208 104_410_10906632_114_32533_096 Sorgh... 56 5e-006
gb|CW229188.1|CW229188 104_670_11207171_116_37259_042 Sorgh... 56 5e-006
gb|CW229189.1|CW229189 104_670_11207171_148_37260_042 Sorgh... 56 5e-006
gb|BG102529.1|BG102529 RHIZ2_34_B12.g1_A003 Rhizome2 (RHIZ2... 56 5e-006
gb|BQ479087.1|BQ479087 pRC-1199 pRC Sorghum halepense cDNA ... 56 5e-006
gb|DN551914.1|DN551914 pSPR-RT-MR-H2_C06_C282 pSPR Sorghum ... 56 5e-006
gb|CN129367.1|CN129367 RHOH1_35_B11.b3_A002 Acid- and alkal... 54 2e-005
gb|CW376699.1|CW376699 fsbb001f054l06k0 Sorghum methylation... 52 7e-005
gb|BG559141.1|BG559141 RHIZ2_55_B12.g1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|CD432148.1|CD432148 ETH1_26_B01.b1_A002 Ethylene-treated... 52 7e-005
gb|CW460183.1|CW460183 fsbb001f207e13k0 Sorghum methylation... 50 3e-004
gb|CW039698.1|CW039698 104_272_10505645_114_30389 Sorghum m... 48 0.001
gb|CW039699.1|CW039699 104_272_10505645_115_30390 Sorghum m... 48 0.001
gb|CW041615.1|CW041615 104_275_10506649_114_30284 Sorghum m... 48 0.001
gb|CW171385.1|CW171385 104_582_11155714_116_36532_045 Sorgh... 48 0.001
gb|CW177756.1|CW177756 104_591_11159198_116_36610_059 Sorgh... 48 0.001
gb|CW256801.1|CW256801 104_722_11226991_148_35148_032 Sorgh... 48 0.001
gb|CW321278.1|CW321278 104_814_11475462_116_35933_021 Sorgh... 48 0.001
gb|CW387885.1|CW387885 fsbb001f072g19f0 Sorghum methylation... 48 0.001
gb|BE356370.1|BE356370 DG1_124_G10.g1_A002 Dark Grown 1 (DG... 48 0.001
gb|BF657393.1|BF657393 OV2_24_E08.g1_A002 Ovary 2 (OV2) Sor... 48 0.001
gb|BG049318.1|BG049318 OV1_18_D11.g1_A002 Ovary 1 (OV1) Sor... 48 0.001
gb|BG049527.1|BG049527 EM1_5_B12.g1_A002 Embryo 1 (EM1) Sor... 48 0.001
gb|BG412512.1|BG412512 OV2_35_C06.g1_A002 Ovary 2 (OV2) Sor... 48 0.001
gb|BG739434.1|BG739434 EM1_82_H04.g1_A002 Embryo 1 (EM1) So... 48 0.001
gb|CD223757.1|CD223757 CCC1_30_D11.b1_A007 Callus culture/c... 48 0.001
gb|CD227380.1|CD227380 CCC1_51_H01.b1_A007 Callus culture/c... 48 0.001
gb|CD428079.1|CD428079 ETH1_32_E01.g1_A002 Ethylene-treated... 48 0.001
gb|CN125015.1|CN125015 RHOH1_8_G11.b1_A002 Acid- and alkali... 48 0.001
gb|CN134421.1|CN134421 OX1_26_F05.b1_A002 Oxidatively-stres... 48 0.001
gb|CN141913.1|CN141913 WOUND1_2_E01.g1_A002 Wounded leaves ... 48 0.001
gb|CN143945.1|CN143945 WOUND1_19_G06.b1_A002 Wounded leaves... 48 0.001
gb|CN144039.1|CN144039 WOUND1_19_G06.g1_A002 Wounded leaves... 48 0.001
gb|CN146254.1|CN146254 WOUND1_39_D02.b1_A002 Wounded leaves... 48 0.001
gb|CN146331.1|CN146331 WOUND1_39_D02.g1_A002 Wounded leaves... 48 0.001
gb|CX619969.1|CX619969 GABR1_49_B08.b1_A002 GA- or brassino... 48 0.001
gb|CL165130.1|CL165130 104_359_10808375_116_31817_359 Sorgh... 44 0.018
gb|CW062333.1|CW062333 104_307_10521280_5_30083 Sorghum met... 44 0.018
gb|CW255393.1|CW255393 104_720_11226211_148_35134_080 Sorgh... 44 0.018
gb|BG050942.1|BG050942 FM1_54_C04.b1_A003 Floral-Induced Me... 44 0.018
gb|BG556320.1|BG556320 EM1_68_E05.g1_A002 Embryo 1 (EM1) So... 44 0.018
gb|CB929072.1|CB929072 ABA1_39_D11.b1_A012 Abscisic acid-tr... 44 0.018
gb|CD203717.1|CD203717 HS1_1_F10.b1_A012 Heat-shocked seedl... 44 0.018
gb|CD204828.1|CD204828 HS1_10_F02.b1_A012 Heat-shocked seed... 44 0.018
gb|CD204968.1|CD204968 HS1_11_A05.b1_A012 Heat-shocked seed... 44 0.018
gb|CD205756.1|CD205756 HS1_18_D10.b1_A012 Heat-shocked seed... 44 0.018
gb|CD207556.1|CD207556 HS1_33_H06.b1_A012 Heat-shocked seed... 44 0.018
gb|CD207845.1|CD207845 HS1_35_B01.b1_A012 Heat-shocked seed... 44 0.018
gb|CD209128.1|CD209128 HS1_46_F12.b1_A012 Heat-shocked seed... 44 0.018
gb|CD209348.1|CD209348 HS1_42_F11.b1_A012 Heat-shocked seed... 44 0.018
gb|CD209407.1|CD209407 HS1_42_E12.b1_A012 Heat-shocked seed... 44 0.018
gb|CD210552.1|CD210552 HS1_48_A08.b1_A012 Heat-shocked seed... 44 0.018
gb|CD211393.1|CD211393 HS1_60_D03.b1_A012 Heat-shocked seed... 44 0.018
gb|CD211565.1|CD211565 HS1_63_C11.b1_A012 Heat-shocked seed... 44 0.018
gb|CD212603.1|CD212603 HS1_6_E09.b1_A012 Heat-shocked seedl... 44 0.018
gb|CD213926.1|CD213926 HS1_69_E08.b1_A012 Heat-shocked seed... 44 0.018
gb|CD231260.1|CD231260 SS1_15_E03.b1_A012 Salt-stressed see... 44 0.018
gb|CD234668.1|CD234668 SS1_17_F08.b1_A012 Salt-stressed see... 44 0.018
gb|CD236010.1|CD236010 SS1_25_D10.b1_A012 Salt-stressed see... 44 0.018
gb|CN130501.1|CN130501 RHOH1_42_A01.b1_A002 Acid- and alkal... 44 0.018
gb|CW027713.1|CW027713 104_254_10498669_114_30395 Sorghum m... 42 0.070
gb|CW027714.1|CW027714 104_254_10498669_116_30396 Sorghum m... 42 0.070
gb|CW061628.1|CW061628 104_305_10520503_114_30152 Sorghum m... 42 0.070
gb|CW195929.1|CW195929 104_619_11180897_148_36801_067 Sorgh... 42 0.070
gb|CW438304.1|CW438304 fsbb001f155n15k0 Sorghum methylation... 42 0.070
gb|CW473032.1|CW473032 fsbb001f228d24f0 Sorghum methylation... 42 0.070
gb|BG557259.1|BG557259 EM1_44_F06.g1_A002 Embryo 1 (EM1) So... 42 0.070
gb|BG739288.1|BG739288 EM1_81_B09.g1_A002 Embryo 1 (EM1) So... 42 0.070
gb|BG948312.1|BG948312 IP1_12_A12.g1_A002 Immature pannicle... 42 0.070
gb|BG948328.1|BG948328 IP1_12_C10.g1_A002 Immature pannicle... 42 0.070
gb|BI074412.1|BI074412 IP1_15_G10.g1_A002 Immature pannicle... 42 0.070
gb|CD221936.1|CD221936 CCC1_1_E08.b1_A007 Callus culture/ce... 42 0.070
gb|CD223640.1|CD223640 CCC1_29_E03.b1_A007 Callus culture/c... 42 0.070
gb|CD225239.1|CD225239 CCC1_39_A10.b1_A007 Callus culture/c... 42 0.070
gb|CD228554.1|CD228554 CCC1_8_F09.b1_A007 Callus culture/ce... 42 0.070
gb|CD229282.1|CD229282 CCC1_14_C06.b1_A007 Callus culture/c... 42 0.070
gb|CD423830.1|CD423830 SA1_2_A07.b1_A002 Salicylic acid-tre... 42 0.070
gb|CD424922.1|CD424922 SA1_9_G04.b1_A002 Salicylic acid-tre... 42 0.070
gb|CD425047.1|CD425047 SA1_10_E10.b1_A002 Salicylic acid-tr... 42 0.070
gb|CD425253.1|CD425253 SA1_11_G05.b1_A002 Salicylic acid-tr... 42 0.070
gb|CD426761.1|CD426761 SA1_25_D08.b1_A002 Salicylic acid-tr... 42 0.070
gb|CD463740.1|CD463740 ETH1_46_H05.b1_A002 Ethylene-treated... 42 0.070
gb|CD463749.1|CD463749 ETH1_46_H05.g1_A002 Ethylene-treated... 42 0.070
gb|CF071076.1|CF071076 FE1_15_F09.b1_A002 Iron-deficient se... 42 0.070
gb|CF071728.1|CF071728 FE1_18_C08.b1_A002 Iron-deficient se... 42 0.070
gb|CF072024.1|CF072024 FE1_20_C07.b1_A002 Iron-deficient se... 42 0.070
gb|CF073270.1|CF073270 FE1_22_D10.b1_A002 Iron-deficient se... 42 0.070
gb|CF073610.1|CF073610 FE1_11_H02.b1_A002 Iron-deficient se... 42 0.070
gb|CF073750.1|CF073750 FE1_12_B05.b1_A002 Iron-deficient se... 42 0.070
gb|CF074220.1|CF074220 FE1_23_F10.b1_A002 Iron-deficient se... 42 0.070
gb|CF074273.1|CF074273 FE1_23_F06.b1_A002 Iron-deficient se... 42 0.070
gb|CF428851.1|CF428851 PH1_18_F01.b1_A002 Phosphorous-defic... 42 0.070
gb|CF433326.1|CF433326 NIT1_26_A08.b1_A002 Nitrogen-deficie... 42 0.070
gb|CF480527.1|CF480527 POL1_66_G06.b1_A002 Pollen Sorghum b... 42 0.070
gb|CF480536.1|CF480536 POL1_66_H05.b1_A002 Pollen Sorghum b... 42 0.070
gb|CF481127.1|CF481127 POL1_70_D06.b1_A002 Pollen Sorghum b... 42 0.070
gb|CF481904.1|CF481904 POL1_75_B09.b1_A002 Pollen Sorghum b... 42 0.070
gb|CF484555.1|CF484555 POL1_26_B09.b1_A002 Pollen Sorghum b... 42 0.070
gb|CF486542.1|CF486542 POL1_38_G07.b1_A002 Pollen Sorghum b... 42 0.070
gb|CF488978.1|CF488978 POL1_53_H03.b1_A002 Pollen Sorghum b... 42 0.070
gb|CN126583.1|CN126583 RHOH1_18_B07.b1_A002 Acid- and alkal... 42 0.070
gb|CN133394.1|CN133394 OX1_12_A06.b1_A002 Oxidatively-stres... 42 0.070
gb|CN138207.1|CN138207 OX1_62_H04.b1_A002 Oxidatively-stres... 42 0.070
gb|CN141505.1|CN141505 OX1_52_C07.b1_A002 Oxidatively-stres... 42 0.070
gb|CN143265.1|CN143265 WOUND1_15_D05.b1_A002 Wounded leaves... 42 0.070
gb|CN145917.1|CN145917 WOUND1_36_D12.b1_A002 Wounded leaves... 42 0.070
gb|CX607213.1|CX607213 ANR1_7_G06.b1_A002 Anaerobic roots S... 42 0.070
gb|CX607872.1|CX607872 ANR1_31_F11.b1_A002 Anaerobic roots ... 42 0.070
gb|CX608176.1|CX608176 ANR1_37_D03.b1_A002 Anaerobic roots ... 42 0.070
gb|CX609485.1|CX609485 ANR1_13_B01.b1_A002 Anaerobic roots ... 42 0.070
gb|CX610841.1|CX610841 ANR1_21_D06.b1_A002 Anaerobic roots ... 42 0.070
gb|CX615290.1|CX615290 GABR1_19_F07.b1_A002 GA- or brassino... 42 0.070
gb|CX615787.1|CX615787 GABR1_23_B05.b1_A002 GA- or brassino... 42 0.070
gb|CX616022.1|CX616022 GABR1_25_H06.b1_A002 GA- or brassino... 42 0.070
gb|CX616672.1|CX616672 GABR1_29_F05.b1_A002 GA- or brassino... 42 0.070
gb|CX618556.1|CX618556 GABR1_40_G06.b1_A002 GA- or brassino... 42 0.070
gb|CX619558.1|CX619558 GABR1_46_F02.b1_A002 GA- or brassino... 42 0.070
gb|CL155532.1|CL155532 104_341_10782207_114_31471_303 Sorgh... 40 0.28
gb|CW051419.1|CW051419 104_291_10515236_114_30192 Sorghum m... 40 0.28
gb|CW138756.1|CW138756 104_528_11134865_116_34888_069 Sorgh... 40 0.28
gb|CW138757.1|CW138757 104_528_11134865_148_34892_069 Sorgh... 40 0.28
gb|CW171987.1|CW171987 104_583_11156036_116_36536_080 Sorgh... 40 0.28
gb|CW407265.1|CW407265 fsbb001f100k14k0 Sorghum methylation... 40 0.28
gb|AW287233.2|AW287233 LG1_268_C03.b1_A002 Light Grown 1 (L... 40 0.28
gb|BE358945.1|BE358945 DG1_37_C09.b1_A002 Dark Grown 1 (DG1... 40 0.28
gb|BE358978.1|BE358978 DG1_37_C09.g1_A002 Dark Grown 1 (DG1... 40 0.28
gb|BE361499.1|BE361499 DG1_81_B09.b1_A002 Dark Grown 1 (DG1... 40 0.28
gb|BF421147.1|BF421147 FM1_6_A06.b1_A003 Floral-Induced Mer... 40 0.28
gb|BG559766.1|BG559766 RHIZ2_73_D05.g1_A003 Rhizome2 (RHIZ2... 40 0.28
gb|BI211697.1|BI211697 IP1_60_G05.g1_A002 Immature pannicle... 40 0.28
gb|CD223455.1|CD223455 CCC1_28_H10.b1_A007 Callus culture/c... 40 0.28
gb|CD227549.1|CD227549 CCC1_52_B10.b1_A007 Callus culture/c... 40 0.28
gb|CN127255.1|CN127255 RHOH1_22_A01.b1_A002 Acid- and alkal... 40 0.28
gb|CN146585.1|CN146585 WOUND1_42_E05.b1_A002 Wounded leaves... 40 0.28
gb|CN150200.1|CN150200 WOUND1_67_D03.g1_A002 Wounded leaves... 40 0.28
>gb|CW433265.1|CW433265 fsbb001f148g13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148g13, DNA
sequence
Length = 768
Score = 418 bits (211), Expect = e-115
Identities = 277/299 (92%)
Strand = Plus / Plus
Query: 426 gaaccgccgccgcagttcatcaatcaggagtagttcaccaaggagcggtacgtggccccg 485
||||||||| |||||||||| ||| |||||||||| |||| |||||||||||| || |||
Sbjct: 13 gaaccgccggcgcagttcattaattaggagtagttgaccagggagcggtacgttgcgccg 72
Query: 486 gggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtc 545
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 73 gggttccagccggcggggatgacgttgttggcgacgagcaccttgccggagtcggaggtg 132
Query: 546 agccggagcgagaagggcgccttcagcgccttgccggtgttggagttgtagcgccagagc 605
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 133 aggcggagcgagaagggcgccttgagcgccttgccggtgttggagttgtagcgccacagc 192
Query: 606 gcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggacg 665
||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||| |||
Sbjct: 193 gcgccccagttctgcaccatcggcgtccaggtgccgcaaccggcctccatcaggtccacg 252
Query: 666 gcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
|||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct: 253 gcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctccaagtagaatgggtt 311
>gb|CX613415.1|CX613415 GABR1_8_B11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_B11_A002 3', mRNA sequence
Length = 779
Score = 418 bits (211), Expect = e-115
Identities = 277/299 (92%)
Strand = Plus / Minus
Query: 426 gaaccgccgccgcagttcatcaatcaggagtagttcaccaaggagcggtacgtggccccg 485
||||||||| |||||||||| ||| |||||||||| |||| |||||||||||| || |||
Sbjct: 373 gaaccgccggcgcagttcattaattaggagtagttgaccagggagcggtacgttgcgccg 314
Query: 486 gggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtc 545
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 313 gggttccagccggcggggatgacgttgttggcgacgagcaccttgccggagtcggaggtg 254
Query: 546 agccggagcgagaagggcgccttcagcgccttgccggtgttggagttgtagcgccagagc 605
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 253 aggcggagcgagaagggcgccttgagcgccttgccggtgttggagttgtagcgccacagc 194
Query: 606 gcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggacg 665
||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||| |||
Sbjct: 193 gcgccccagttctgcaccatcggcgtccaggtgccgcaaccggcctccatcaggtccacg 134
Query: 666 gcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
|||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct: 133 gcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctccaagtagaatgggtt 75
Score = 119 bits (60), Expect = 4e-025
Identities = 116/132 (87%), Gaps = 7/132 (5%)
Strand = Plus / Minus
Query: 179 cgaccactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacacacg 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 603 cgacgactacacacatcactaggtgactgcagagaccgtggagggagtgaaga--acacg 546
Query: 239 gct-ccttaaccttcttgtcctcctcctcttctt----acaccgcctctcgcggacaccc 293
||| ||||||||||||| | || |||||| |||| |||||||||||||| ||||||
Sbjct: 545 gctcccttaaccttcttcttcttctcctcctcttctgaacaccgcctctcgcaaacaccc 486
Query: 294 gaacatacattt 305
| ||| ||||||
Sbjct: 485 ggacacacattt 474
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 367 gcacttcttggccacgcataataatccagccaagcgca 404
||||||||||||||| ||||||||||| ||||||||||
Sbjct: 431 gcacttcttggccacccataataatccggccaagcgca 394
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 67 tcaattctctgaaaggattgcgtggtaca 95
|||||||||||||||||||||||||||||
Sbjct: 762 tcaattctctgaaaggattgcgtggtaca 734
>gb|BZ349112.1|BZ349112 hq87c03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hq87c03 5', DNA sequence
Length = 436
Score = 400 bits (202), Expect = e-110
Identities = 256/274 (93%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 423 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 364
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 363 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 304
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 303 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 244
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 243 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcct 184
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||| | |||||||| |||||||| |||||
Sbjct: 183 cgaactccaccagcacctcgaagtagaatgggtt 150
>gb|CL165129.1|CL165129 104_359_10808375_114_31816_359 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808375, DNA
sequence
Length = 758
Score = 400 bits (202), Expect = e-110
Identities = 256/274 (93%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 613 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 554
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 553 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 494
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 493 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 434
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 433 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcct 374
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||| | |||||||| |||||||| |||||
Sbjct: 373 cgaactccaccagcacctcgaagtagaatgggtt 340
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 752 acatcactagggggactgcagaggccgtggagggagggaagaac 709
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 694 tcctcctcatcttctgacaccgcctctcgc 665
>gb|CW204078.1|CW204078 104_631_11186348_148_37094_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186348, DNA
sequence
Length = 736
Score = 400 bits (202), Expect = e-110
Identities = 256/274 (93%)
Strand = Plus / Plus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 315 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 374
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 375 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 434
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 435 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 494
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 495 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcct 554
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||| | |||||||| |||||||| |||||
Sbjct: 555 cgaactccaccagcacctcgaagtagaatgggtt 588
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 176 acatcactagggggactgcagaggccgtggagggagggaagaac 219
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 234 tcctcctcatcttctgacaccgcctctcgc 263
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 tcaattctctgaaaggattgcgtggtacagaaaa 100
|||||| ||| |||||||||||||||||| ||||
Sbjct: 26 tcaattatctcaaaggattgcgtggtacaaaaaa 59
>gb|CW402616.1|CW402616 fsbb001f093p05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f093p05, DNA
sequence
Length = 658
Score = 400 bits (202), Expect = e-110
Identities = 256/274 (93%)
Strand = Plus / Plus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 290 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 349
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 350 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 409
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 410 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 469
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 470 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcct 529
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||| | |||||||| |||||||| |||||
Sbjct: 530 cgaactccaccagcacctcgaagtagaatgggtt 563
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 151 acatcactagggggactgcagaggccgtggagggagggaagaac 194
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 209 tcctcctcatcttctgacaccgcctctcgc 238
>gb|BE357973.1|BE357973 DG1_23_H03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 582
Score = 400 bits (202), Expect = e-110
Identities = 256/274 (93%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 291 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 232
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 231 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 172
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 171 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 112
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 111 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcct 52
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||| | |||||||| |||||||| |||||
Sbjct: 51 cgaactccaccagcacctcgaagtagaatgggtt 18
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 430 acatcactagggggactgcagaggccgtggagggagggaagaac 387
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 372 tcctcctcatcttctgacaccgcctctcgc 343
>gb|CD432496.1|CD432496 ETH1_30_C04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_30_C04_A002 3', mRNA sequence
Length = 657
Score = 400 bits (202), Expect = e-110
Identities = 256/274 (93%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 346 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 287
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 286 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 227
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 226 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 167
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 166 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcct 107
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||| | |||||||| |||||||| |||||
Sbjct: 106 cgaactccaccagcacctcgaagtagaatgggtt 73
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 485 acatcactagggggactgcagaggccgtggagggagggaagaac 442
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 67 tcaattctctgaaaggattgcgtggtacagaaaa 100
|||||| ||| |||||||||||||||||| ||||
Sbjct: 635 tcaattatctcaaaggattgcgtggtacaaaaaa 602
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 427 tcctcctcatcttctgacaccgcctctcgc 398
>gb|CD462510.1|CD462510 ETH1_38_D10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_D10_A002 3', mRNA sequence
Length = 669
Score = 400 bits (202), Expect = e-110
Identities = 256/274 (93%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 345 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 286
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 285 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 226
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 225 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 166
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 165 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcct 106
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||| | |||||||| |||||||| |||||
Sbjct: 105 cgaactccaccagcacctcgaagtagaatgggtt 72
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 484 acatcactagggggactgcagaggccgtggagggagggaagaac 441
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 67 tcaattctctgaaaggattgcgtggtacagaaaa 100
|||||| ||| |||||||||||||||||| ||||
Sbjct: 634 tcaattatctcaaaggattgcgtggtacaaaaaa 601
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 426 tcctcctcatcttctgacaccgcctctcgc 397
>gb|DN552513.1|DN552513 pSHR-RT-A-H1_H09_C105 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 1256
Score = 385 bits (194), Expect = e-105
Identities = 254/274 (92%)
Strand = Plus / Plus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
|||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 330 aggagtagttgaccagggagcggtacgttgcgccggggttccagccggcggggatgacgt 389
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 390 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 449
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 450 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 509
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 510 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcct 569
Query: 691 cgaactcgatgagcacctccaagtagaacgggtt 724
||||||| | |||||||| |||||||| |||||
Sbjct: 570 cgaactccaccagcacctcaaagtagaatgggtt 603
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 191 acatcactagggggactgcagaggccgtggagggagggaagaac 234
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 249 tcctcctcatcttctgacaccgcctctcgc 278
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 tcaattctctgaaaggattgcgtggtacagaaaa 100
|||||| ||| |||||||||||||||||| ||||
Sbjct: 42 tcaattatctcaaaggattgcgtggtacaaaaaa 75
>gb|CD428756.1|CD428756 ETH1_36_H11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_H11_A002 3', mRNA sequence
Length = 531
Score = 379 bits (191), Expect = e-103
Identities = 233/247 (94%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 249 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 190
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 189 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 130
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 129 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 70
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 69 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccatcgccgtcct 10
Query: 691 cgaactc 697
|||||||
Sbjct: 9 cgaactc 3
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 203 gactgcagagaccgtggagggagtgaagaac 233
|||||||||| |||||||||||| |||||||
Sbjct: 375 gactgcagaggccgtggagggagggaagaac 345
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 330 tcctcctcatcttctgacaccgcctctcgc 301
>gb|CD233638.1|CD233638 SS1_3_G02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_3_G02_A012 3', mRNA sequence
Length = 542
Score = 373 bits (188), Expect = e-101
Identities = 227/240 (94%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 240 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 181
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 180 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 121
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 120 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 61
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 60 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcct 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 379 acatcactagggggactgcagaggccgtggagggagggaagaac 336
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 321 tcctcctcatcttctgacaccgcctctcgc 292
>gb|CN125001.1|CN125001 RHOH1_8_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_F08_A002 3', mRNA sequence
Length = 730
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 420 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 361
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| ||||||||||||| || || |||| ||||||||||||||| |
Sbjct: 360 tgttggcgacgagcaccttgccggagtcggaagtgaggcggaacgagaagggcgccttga 301
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 300 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 241
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcct 690
|||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 240 tccaggtgccgcaaccggcctccatcaggttcacggcgctgaggtcgccgtcgccgtcct 181
Query: 691 cgaactc 697
|||||||
Sbjct: 180 cgaactc 174
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 559 acatcactagggggactgcagaggccgtggagggagggaagaac 516
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 501 tcctcctcatcttctgacaccgcctctcgc 472
>gb|CD230488.1|CD230488 SS1_44_B08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_44_B08_A012 3', mRNA sequence
Length = 503
Score = 327 bits (165), Expect = 8e-088
Identities = 195/205 (95%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgt 146
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct: 145 tgttggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttga 86
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 85 gcgccttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcg 26
Query: 631 tccacgtgccgcacccggcctccat 655
|||| |||||||| |||||||||||
Sbjct: 25 tccaggtgccgcaaccggcctccat 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 344 acatcactagggggactgcagaggccgtggagggagggaagaac 301
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 67 tcaattctctgaaaggattgcgtggtacagaaaa 100
|||||| ||| |||||||||||||||||| ||||
Sbjct: 494 tcaattatctcaaaggattgcgtggtacaaaaaa 461
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 286 tcctcctcatcttctgacaccgcctctcgc 257
>gb|CD231800.1|CD231800 SS1_30_D03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_30_D03_A012 3', mRNA sequence
Length = 604
Score = 321 bits (162), Expect = 5e-086
Identities = 192/202 (95%)
Strand = Plus / Minus
Query: 426 gaaccgccgccgcagttcatcaatcaggagtagttcaccaaggagcggtacgtggccccg 485
||||||||| |||||||||| ||| |||||||||| |||||||||||||||||||| |||
Sbjct: 202 gaaccgccggcgcagttcattaattaggagtagttgaccaaggagcggtacgtggcgccg 143
Query: 486 gggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtc 545
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 142 gggttccagccggcggggatgacgttgttggcgacgagcaccttgccggagtcggaggtg 83
Query: 546 agccggagcgagaagggcgccttcagcgccttgccggtgttggagttgtagcgccagagc 605
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 82 aggcggagcgagaagggcgccttgagcgccttgccggtgttggagttgtagcgccacagc 23
Query: 606 gcgccccagttctgcaccatcg 627
||||||||||||||||||||||
Sbjct: 22 gcgccccagttctgcaccatcg 1
Score = 119 bits (60), Expect = 4e-025
Identities = 116/132 (87%), Gaps = 7/132 (5%)
Strand = Plus / Minus
Query: 179 cgaccactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacacacg 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 432 cgacgactacacacatcactaggtgactgcagagaccgtggagggagtgaaga--acacg 375
Query: 239 gct-ccttaaccttcttgtcctcctcctcttctt----acaccgcctctcgcggacaccc 293
||| ||||||||||||| | || |||||| |||| |||||||||||||| ||||||
Sbjct: 374 gctcccttaaccttcttcttcttctcctcctcttctgaacaccgcctctcgcaaacaccc 315
Query: 294 gaacatacattt 305
| ||| ||||||
Sbjct: 314 ggacacacattt 303
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 367 gcacttcttggccacgcataataatccagccaagcgca 404
||||||||||||||| ||||||||||| ||||||||||
Sbjct: 260 gcacttcttggccacccataataatccggccaagcgca 223
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 67 tcaattctctgaaaggattgcgtggtaca 95
|||||||||||||||||||||||||||||
Sbjct: 591 tcaattctctgaaaggattgcgtggtaca 563
>gb|BF656823.1|BF656823 OV2_23_D07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 307 bits (155), Expect = 8e-082
Identities = 191/203 (94%)
Strand = Plus / Minus
Query: 426 gaaccgccgccgcagttcatcaatcaggagtagttcaccaaggagcggtacgtggccccg 485
||||||||| |||||||||| ||| |||||||||| |||| |||||||||||| || |||
Sbjct: 204 gaaccgccggcgcagttcattaattaggagtagttgaccagggagcggtacgttgcgccg 145
Query: 486 gggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtc 545
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 144 gggttccagccggcggggatgacgttgttggcgacgagcaccttgccggagtcggaggtg 85
Query: 546 agccggagcgagaagggcgccttcagcgccttgccggtgttggagttgtagcgccagagc 605
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 84 aggcggagcgagaagggcgccttgagcgccttgccggtgttggagttgtagcgccacagc 25
Query: 606 gcgccccagttctgcaccatcgg 628
|||||||||||||||||||||||
Sbjct: 24 gcgccccagttctgcaccatcgg 2
Score = 119 bits (60), Expect = 4e-025
Identities = 116/132 (87%), Gaps = 7/132 (5%)
Strand = Plus / Minus
Query: 179 cgaccactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacacacg 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 434 cgacgactacacacatcactaggtgactgcagagaccgtggagggagtgaaga--acacg 377
Query: 239 gct-ccttaaccttcttgtcctcctcctcttctt----acaccgcctctcgcggacaccc 293
||| ||||||||||||| | || |||||| |||| |||||||||||||| ||||||
Sbjct: 376 gctcccttaaccttcttcttcttctcctcctcttctgaacaccgcctctcgcaaacaccc 317
Query: 294 gaacatacattt 305
| ||| ||||||
Sbjct: 316 ggacacacattt 305
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 367 gcacttcttggccacgcataataatccagccaagcgca 404
||||||||||||||| ||||||||||| ||||||||||
Sbjct: 262 gcacttcttggccacccataataatccggccaagcgca 225
>gb|CN128146.1|CN128146 RHOH1_27_G06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_G06_A002 3', mRNA sequence
Length = 524
Score = 283 bits (143), Expect = 1e-074
Identities = 209/231 (90%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgt 510
||||||||||||||| |||||||||| |||| || |||||||||||||||||||||||||
Sbjct: 231 aggagtagttcaccagggagcggtacctggcgcctgggttccagccggcggggatgacgt 172
Query: 511 tgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttca 570
||||||||||||||||| ||||||||||||| || || | || ||||||||||||||| |
Sbjct: 171 tgttggcgacgagcaccttgccggagtcggaagtgaggccgaacgagaagggcgccttga 112
Query: 571 gcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgggg 630
| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct: 111 accccttgcccgtgttggagttgtagcaccacagcgcgccccagttctgcaccatcggcg 52
Query: 631 tccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgt 681
|||| |||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 51 tccaggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgt 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 370 acatcactagggggactgcagaggccgtggagggagggaagaac 327
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 67 tcaattctctgaaaggattgcgtggtacagaaaa 100
|||||| ||| |||||||||||||||||| ||||
Sbjct: 520 tcaattatctcaaaggattgcgtggtacaaaaaa 487
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 312 tcctcctcatcttctgacaccgcctctcgc 283
>gb|CN128815.1|CN128815 RHOH1_31_F05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_31_F05_A002 5', mRNA sequence
Length = 847
Score = 248 bits (125), Expect = 6e-064
Identities = 170/185 (91%)
Strand = Plus / Minus
Query: 540 gaggtcagccggagcgagaagggcgccttcagcgccttgccggtgttggagttgtagcgc 599
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 847 gaggtgaggcggagcgagaagggcgccttgagcgccttgccggtgttggagttgtagcgc 788
Query: 600 cagagcgcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgagg 659
|| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||
Sbjct: 787 cacagcgcgccccagttctgcaccatcggcgtccaggtgccgcaaccggcctccatcagg 728
Query: 660 tggacggcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaac 719
| ||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 727 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtagaat 668
Query: 720 gggtt 724
|||||
Sbjct: 667 gggtt 663
>gb|CN125086.1|CN125086 RHOH1_8_F08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_F08_A002 5', mRNA sequence
Length = 805
Score = 188 bits (95), Expect = 5e-046
Identities = 131/143 (91%)
Strand = Plus / Minus
Query: 582 gtgttggagttgtagcgccagagcgcgccccagttctgcaccatcggggtccacgtgccg 641
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 805 gtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtccaggtgccg 746
Query: 642 cacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcctcgaactcgatg 701
|| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 745 caaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaactccacc 686
Query: 702 agcacctccaagtagaacgggtt 724
|||||||| |||||||| |||||
Sbjct: 685 agcacctcgaagtagaatgggtt 663
>gb|CD229975.1|CD229975 SS1_40_F09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_40_F09_A012 3', mRNA sequence
Length = 517
Score = 170 bits (86), Expect = 1e-040
Identities = 104/110 (94%)
Strand = Plus / Minus
Query: 426 gaaccgccgccgcagttcatcaatcaggagtagttcaccaaggagcggtacgtggccccg 485
||||||||| |||||||||| ||| |||||||||| |||||||||||||||||||| |||
Sbjct: 110 gaaccgccggcgcagttcattaattaggagtagttgaccaaggagcggtacgtggcgccg 51
Query: 486 gggttccagccggcggggatgacgttgttggcgacgagcaccctgccgga 535
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 50 gggttccagccggcggggatgacgttgttggcgacgagcaccttgccgga 1
Score = 119 bits (60), Expect = 4e-025
Identities = 116/132 (87%), Gaps = 7/132 (5%)
Strand = Plus / Minus
Query: 179 cgaccactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacacacg 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 cgacgactacacacatcactaggtgactgcagagaccgtggagggagtgaaga--acacg 283
Query: 239 gct-ccttaaccttcttgtcctcctcctcttctt----acaccgcctctcgcggacaccc 293
||| ||||||||||||| | || |||||| |||| |||||||||||||| ||||||
Sbjct: 282 gctcccttaaccttcttcttcttctcctcctcttctgaacaccgcctctcgcaaacaccc 223
Query: 294 gaacatacattt 305
| ||| ||||||
Sbjct: 222 ggacacacattt 211
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 49 aaacaagaaagcaggaactcaattctctgaaaggattgcgtggtaca 95
||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 517 aaacaggaaaacaggagttcaattctctgaaaggattgcgtggtaca 471
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 367 gcacttcttggccacgcataataatccagccaagcgca 404
||||||||||||||| ||||||||||| ||||||||||
Sbjct: 168 gcacttcttggccacccataataatccggccaagcgca 131
>gb|BG159238.1|BG159238 OV2_5_B04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 445
Score = 167 bits (84), Expect = 2e-039
Identities = 108/116 (93%)
Strand = Plus / Minus
Query: 426 gaaccgccgccgcagttcatcaatcaggagtagttcaccaaggagcggtacgtggccccg 485
||||||||| |||||||||| ||| |||||||||| |||| |||||||||||| || |||
Sbjct: 116 gaaccgccggcgcagttcattaattaggagtagttgaccagggagcggtacgttgcgccg 57
Query: 486 gggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcgga 541
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 56 gggttccagccggcggggatgacgttgttggcgacgagcaccttgccggagtcgga 1
Score = 119 bits (60), Expect = 4e-025
Identities = 116/132 (87%), Gaps = 7/132 (5%)
Strand = Plus / Minus
Query: 179 cgaccactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacacacg 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 346 cgacgactacacacatcactaggtgactgcagagaccgtggagggagtgaaga--acacg 289
Query: 239 gct-ccttaaccttcttgtcctcctcctcttctt----acaccgcctctcgcggacaccc 293
||| ||||||||||||| | || |||||| |||| |||||||||||||| ||||||
Sbjct: 288 gctcccttaaccttcttcttcttctcctcctcttctgaacaccgcctctcgcaaacaccc 229
Query: 294 gaacatacattt 305
| ||| ||||||
Sbjct: 228 ggacacacattt 217
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 367 gcacttcttggccacgcataataatccagccaagcgca 404
||||||||||||||| ||||||||||| ||||||||||
Sbjct: 174 gcacttcttggccacccataataatccggccaagcgca 137
>gb|CN130578.1|CN130578 RHOH1_42_A01.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_42_A01_A002 5', mRNA sequence
Length = 795
Score = 167 bits (84), Expect = 2e-039
Identities = 120/132 (90%)
Strand = Plus / Minus
Query: 593 gtagcgccagagcgcgccccagttctgcaccatcggggtccacgtgccgcacccggcctc 652
||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 795 gtagcgccacagcgcgccccagttctgcaccatcggcgtccaggtgccgcaaccggcctc 736
Query: 653 catgaggtggacggcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaa 712
||| |||| ||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct: 735 catcaggtccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaa 676
Query: 713 gtagaacgggtt 724
|||||| |||||
Sbjct: 675 gtagaatgggtt 664
>gb|BI099614.1|BI099614 IP1_44_E02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 508
Score = 145 bits (73), Expect = 7e-033
Identities = 94/101 (93%)
Strand = Plus / Minus
Query: 426 gaaccgccgccgcagttcatcaatcaggagtagttcaccaaggagcggtacgtggccccg 485
||||||||| |||||||||| ||| |||||||||| |||| |||||||||||| || |||
Sbjct: 101 gaaccgccggcgcagttcattaattaggagtagttgaccagggagcggtacgttgcgccg 42
Query: 486 gggttccagccggcggggatgacgttgttggcgacgagcac 526
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gggttccagccggcggggatgacgttgttggcgacgagcac 1
Score = 119 bits (60), Expect = 4e-025
Identities = 116/132 (87%), Gaps = 7/132 (5%)
Strand = Plus / Minus
Query: 179 cgaccactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacacacg 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 331 cgacgactacacacatcactaggtgactgcagagaccgtggagggagtgaaga--acacg 274
Query: 239 gct-ccttaaccttcttgtcctcctcctcttctt----acaccgcctctcgcggacaccc 293
||| ||||||||||||| | || |||||| |||| |||||||||||||| ||||||
Sbjct: 273 gctcccttaaccttcttcttcttctcctcctcttctgaacaccgcctctcgcaaacaccc 214
Query: 294 gaacatacattt 305
| ||| ||||||
Sbjct: 213 ggacacacattt 202
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 49 aaacaagaaagcaggaactcaattctctgaaaggattgcgtggtaca 95
||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 508 aaacaggaaaacaggagttcaattctctgaaaggattgcgtggtaca 462
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 367 gcacttcttggccacgcataataatccagccaagcgca 404
||||||||||||||| ||||||||||| ||||||||||
Sbjct: 159 gcacttcttggccacccataataatccggccaagcgca 122
>gb|CW477920.1|CW477920 fsbb001f235i02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235i02, DNA
sequence
Length = 658
Score = 119 bits (60), Expect = 4e-025
Identities = 116/132 (87%), Gaps = 7/132 (5%)
Strand = Plus / Plus
Query: 179 cgaccactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacacacg 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 451 cgacgactacacacatcactaggtgactgcagagaccgtggagggagtgaaga--acacg 508
Query: 239 gct-ccttaaccttcttgtcctcctcctcttctt----acaccgcctctcgcggacaccc 293
||| ||||||||||||| | || |||||| |||| |||||||||||||| ||||||
Sbjct: 509 gctcccttaaccttcttcttcttctcctcctcttctgaacaccgcctctcgcaaacaccc 568
Query: 294 gaacatacattt 305
| ||| ||||||
Sbjct: 569 ggacacacattt 580
Score = 65.9 bits (33), Expect = 5e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 43 gtggtgaaacaagaaagcaggaactcaattctctgaaaggattgcgtggtaca 95
||||| ||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 268 gtggtaaaacaggaaaacaggagttcaattctctgaaaggattgcgtggtaca 320
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 367 gcacttcttggccacgcataataatccagccaagcg 402
||||||||||||||| ||||||||||| ||||||||
Sbjct: 623 gcacttcttggccacccataataatccggccaagcg 658
>gb|BI099462.1|BI099462 IP1_42_E02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 360
Score = 119 bits (60), Expect = 4e-025
Identities = 116/132 (87%), Gaps = 7/132 (5%)
Strand = Plus / Minus
Query: 179 cgaccactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacacacg 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 182 cgacgactacacacatcactaggtgactgcagagaccgtggagggagtgaaga--acacg 125
Query: 239 gct-ccttaaccttcttgtcctcctcctcttctt----acaccgcctctcgcggacaccc 293
||| ||||||||||||| | || |||||| |||| |||||||||||||| ||||||
Sbjct: 124 gctcccttaaccttcttcttcttctcctcctcttctgaacaccgcctctcgcaaacaccc 65
Query: 294 gaacatacattt 305
| ||| ||||||
Sbjct: 64 ggacacacattt 53
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 49 aaacaagaaagcaggaactcaattctctgaaaggattgcgtggtaca 95
||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 359 aaacaggaaaacaggagttcaattctctgaaaggattgcgtggtaca 313
>gb|CW253166.1|CW253166 104_716_11224935_116_35104_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224935, DNA
sequence
Length = 674
Score = 117 bits (59), Expect = 1e-024
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 606 gcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggacg 665
||||||||||| ||| |||| || |||||| || || ||||||||||| |||| ||||
Sbjct: 422 gcgccccagttgtgcgccatgggcgtccacacgctgctgccggcctccatcaggtcgacg 481
Query: 666 gcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct: 482 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgttgaagtagaacgggtt 540
Score = 87.7 bits (44), Expect = 1e-015
Identities = 92/108 (85%)
Strand = Plus / Plus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 269 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatg 328
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 329 gcgttgctggcgacgagcaccctgccggagtcggaggtgagccggagc 376
>gb|CW376698.1|CW376698 fsbb001f054l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054l06, DNA
sequence
Length = 588
Score = 117 bits (59), Expect = 1e-024
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 606 gcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggacg 665
||||||||||| ||| |||| || |||||| || || ||||||||||| |||| ||||
Sbjct: 372 gcgccccagttgtgcgccatgggcgtccacacgctgctgccggcctccatcaggtcgacg 313
Query: 666 gcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct: 312 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgttgaagtagaacgggtt 254
Score = 87.7 bits (44), Expect = 1e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 525 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatg 466
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 465 gcgttgctggcgacgagcaccctgccggagtcggaggtgagccggagc 418
>gb|CW480555.1|CW480555 fsbb001f239k22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239k22, DNA
sequence
Length = 361
Score = 117 bits (59), Expect = 1e-024
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 606 gcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggacg 665
||||||||||| ||| |||| || |||||| || || ||||||||||| |||| ||||
Sbjct: 139 gcgccccagttgtgcgccatgggcgtccacacgctgctgccggcctccatcaggtcgacg 80
Query: 666 gcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct: 79 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgttgaagtagaacgggtt 21
Score = 87.7 bits (44), Expect = 1e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 292 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatg 233
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 232 gcgttgctggcgacgagcaccctgccggagtcggaggtgagccggagc 185
>gb|CD210102.1|CD210102 HS1_57_F11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_57_F11_A012 3', mRNA sequence
Length = 692
Score = 117 bits (59), Expect = 1e-024
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 606 gcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggacg 665
||||||||||| ||| |||| || |||||| || || ||||||||||| |||| ||||
Sbjct: 204 gcgccccagttgtgcgccatgggcgtccacacgctgctgccggcctccatcaggtcgacg 145
Query: 666 gcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct: 144 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgttgaagtagaacgggtt 86
Score = 87.7 bits (44), Expect = 1e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 357 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatg 298
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 297 gcgttgctggcgacgagcaccctgccggagtcggaggtgagccggagc 250
>gb|CL171634.1|CL171634 104_373_10889563_116_31777_235 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889563, DNA
sequence
Length = 774
Score = 105 bits (53), Expect = 6e-021
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 179 cgaccactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacac 235
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cgacgactacacacatcactaggtgactgcagagaccgtggagggagtgaagaacac 772
Score = 65.9 bits (33), Expect = 5e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 43 gtggtgaaacaagaaagcaggaactcaattctctgaaaggattgcgtggtaca 95
||||| ||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 533 gtggtaaaacaggaaaacaggagttcaattctctgaaaggattgcgtggtaca 585
>gb|CD221661.1|CD221661 CCC1_70_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_E11_A007 3', mRNA sequence
Length = 561
Score = 105 bits (53), Expect = 6e-021
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 606 gcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggacg 665
||||||||||| ||| |||| || |||||| || || ||||||||||| |||| ||||
Sbjct: 109 gcgccccagttgtgcgccatgggcgtccacacgctgctgccggcctccatcaggtcgacg 50
Query: 666 gcgctgaggtcgccgtcgccgtcctcgaactcgatgagcac 706
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 49 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcac 9
Score = 87.7 bits (44), Expect = 1e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 262 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatg 203
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 gcgttgctggcgacgagcaccctgccggagtcggaggtgagccggagc 155
>gb|CN126050.1|CN126050 RHOH1_14_H04.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_H04_A002 5', mRNA sequence
Length = 799
Score = 105 bits (53), Expect = 6e-021
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 645 ccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcctcgaactcgatgagc 704
||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 773 ccggcctccatcaggtcgacggcgctgaggtcgcngtcgtcgtcctcgaactcgatgagc 714
Query: 705 acctccaagtagaacgggtt 724
|| | ||||||||||||||
Sbjct: 713 acgttgaagtagaacgggtt 694
>gb|CN128214.1|CN128214 RHOH1_27_G06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_G06_A002 5', mRNA sequence
Length = 754
Score = 105 bits (53), Expect = 6e-021
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 636 gtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcctcgaac 695
|||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 751 gtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaac 692
Query: 696 tcgatgagcacctccaagtagaacgggtt 724
|| | |||||||| |||||||| |||||
Sbjct: 691 tccaccagcacctcgaagtagaatgggtt 663
>gb|BE361244.1|BE361244 DG1_70_C10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 636
Score = 103 bits (52), Expect = 2e-020
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 605 cgcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggac 664
|||||||||||| ||| |||| || |||||| || || ||||||||||| |||| |||
Sbjct: 225 cgcgccccagttgtgcgccatgggtgtccacacgctgctgccggcctccatcaggtcgac 166
Query: 665 ggcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
||| |||||||||||||| |||||||||||||||| ||||| || ||||||||||||||
Sbjct: 165 ggccttgaggtcgccgtcgtcgtcctcgaactcgatcagcacgtcgaagtagaacgggtt 106
Score = 95.6 bits (48), Expect = 5e-018
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggag 542
||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 341 ccgggcttccacgcggccgggatggcgttgttggcgacgagcaccctgccggagtcggag 282
Query: 543 gtcagccggagc 554
|| |||||||||
Sbjct: 281 gtgagccggagc 270
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 188 cacacatcactaggtgactgcagagaccgtggagggagtgaagaac 233
||||||||||| || ||||||||||||||| |||||| |||||||
Sbjct: 514 cacacatcacttggggactgcagagaccgtccagggagggaagaac 469
>gb|BG932946.1|BG932946 DG1_69_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 103 bits (52), Expect = 2e-020
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 605 cgcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggac 664
|||||||||||| ||| |||| || |||||| || || ||||||||||| |||| |||
Sbjct: 277 cgcgccccagttgtgcgccatgggtgtccacacgctgctgccggcctccatcaggtcgac 218
Query: 665 ggcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
||| |||||||||||||| |||||||||||||||| ||||| || ||||||||||||||
Sbjct: 217 ggccttgaggtcgccgtcgtcgtcctcgaactcgatcagcacgtcgaagtagaacgggtt 158
Score = 95.6 bits (48), Expect = 5e-018
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggag 542
||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 393 ccgggcttccacgcggccgggatggcgttgttggcgacgagcaccctgccggagtcggag 334
Query: 543 gtcagccggagc 554
|| |||||||||
Sbjct: 333 gtgagccggagc 322
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 188 cacacatcactaggtgactgcagagaccgtggagggagtgaagaac 233
||||||||||| || ||||||||||||||| |||||| |||||||
Sbjct: 566 cacacatcacttggggactgcagagaccgtccagggagggaagaac 521
>gb|CF427028.1|CF427028 PH1_3_A04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_3_A04_A002 3', mRNA sequence
Length = 622
Score = 103 bits (52), Expect = 2e-020
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 605 cgcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggac 664
|||||||||||| ||| |||| || |||||| || || ||||||||||| |||| |||
Sbjct: 250 cgcgccccagttgtgcgccatgggtgtccacacgctgctgccggcctccatcaggtcgac 191
Query: 665 ggcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
||| |||||||||||||| |||||||||||||||| ||||| || ||||||||||||||
Sbjct: 190 ggccttgaggtcgccgtcgtcgtcctcgaactcgatcagcacgtcgaagtagaacgggtt 131
Score = 95.6 bits (48), Expect = 5e-018
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggag 542
||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 366 ccgggcttccacgcggccgggatggcgttgttggcgacgagcaccctgccggagtcggag 307
Query: 543 gtcagccggagc 554
|| |||||||||
Sbjct: 306 gtgagccggagc 295
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 188 cacacatcactaggtgactgcagagaccgtggagggagtgaagaac 233
||||||||||| || ||||||||||||||| |||||| |||||||
Sbjct: 539 cacacatcacttggggactgcagagaccgtccagggagggaagaac 494
>gb|CN123868.1|CN123868 RHOH1_1_F04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_F04_A002 3', mRNA sequence
Length = 614
Score = 103 bits (52), Expect = 2e-020
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 605 cgcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggac 664
|||||||||||| ||| |||| || |||||| || || ||||||||||| |||| |||
Sbjct: 244 cgcgccccagttgtgcgccatgggtgtccacacgctgctgccggcctccatcaggtcgac 185
Query: 665 ggcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
||| |||||||||||||| |||||||||||||||| ||||| || ||||||||||||||
Sbjct: 184 ggccttgaggtcgccgtcgtcgtcctcgaactcgatcagcacgtcgaagtagaacgggtt 125
Score = 83.8 bits (42), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggag 542
||||| ||||| |||| |||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 360 ccgggcttccacgcggccgggatggcgttgttggcgaccagcaccctgccggagtcggag 301
Query: 543 gtcagccgga 552
|| |||||||
Sbjct: 300 gtgagccgga 291
Score = 44.1 bits (22), Expect = 0.018
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 188 cacacatcactaggtgactgcagagaccgtggagggagtgaagaac 233
||||||||||| || ||||||| ||||||| |||||| |||||||
Sbjct: 533 cacacatcacttggggactgcaaagaccgtccagggagggaagaac 488
>gb|BZ780437.1|BZ780437 ii12c06.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii12c06, DNA sequence
Length = 150
Score = 95.6 bits (48), Expect = 5e-018
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 95 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatg 150
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 14 tcctcctcatcttctgacaccgcctctcgc 43
>gb|CW450105.1|CW450105 fsbb001f188j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f188j04, DNA
sequence
Length = 648
Score = 95.6 bits (48), Expect = 5e-018
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 605 cgcgccccagttctgcaccatcggggtccacgtgccgcacccggcctccatgaggtggac 664
|||||||||||| || |||| || |||||| || || ||||||||||| |||| |||
Sbjct: 329 cgcgccccagttgagcgccatgggtgtccacacgctgctgccggcctccatcaggtcgac 388
Query: 665 ggcgctgaggtcgccgtcgccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
||| |||||||||||||| |||||||||||||||| ||||| || ||||||||||||||
Sbjct: 389 ggccttgaggtcgccgtcgtcgtcctcgaactcgatcagcacgtcgaagtagaacgggtt 448
Score = 95.6 bits (48), Expect = 5e-018
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 483 ccggggttccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggag 542
||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 213 ccgggcttccacgcggccgggatggcgttgttggcgacgagcaccctgccggagtcggag 272
Query: 543 gtcagccggagc 554
|| |||||||||
Sbjct: 273 gtgagccggagc 284
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 188 cacacatcactaggtgactgcagagaccgtggagggagtgaagaac 233
||||||||||| || ||||||||||||||| |||||| |||||||
Sbjct: 40 cacacatcacttggggactgcagagaccgtccagggagggaagaac 85
>gb|CN128898.1|CN128898 RHOH1_32_F11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_F11_A002 3', mRNA sequence
Length = 665
Score = 95.6 bits (48), Expect = 5e-018
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 361 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatg 306
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 500 acatcactagggggactgcagaggccgtggagggagggaagaac 457
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 67 tcaattctctgaaaggattgcgtggtacagaaaa 100
|||||| ||| |||||||||||||||||| ||||
Sbjct: 650 tcaattatctcaaaggattgcgtggtacaaaaaa 617
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 442 tcctcctcatcttctgacaccgcctctcgc 413
>gb|CN128978.1|CN128978 RHOH1_32_F11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_F11_A002 5', mRNA sequence
Length = 835
Score = 95.6 bits (48), Expect = 5e-018
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 690 aggagtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatg 635
Score = 48.1 bits (24), Expect = 0.001
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct: 829 acatcactagggggactgcagaggccgtggagggagggaagaac 786
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 771 tcctcctcatcttctgacaccgcctctcgc 742
>gb|BE357900.1|BE357900 DG1_23_H03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 597
Score = 87.7 bits (44), Expect = 1e-015
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 630 gtccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcc 689
||||| |||||||| ||||| ||| |||| |||||||||||||||||||||||||||
Sbjct: 593 gtccaggtgccgcaaccggctcncatcaggtccacggcgctgaggtcgccgtcgccgtcc 534
Query: 690 tcgaactcgatgagcacctccaagtagaacgggtt 724
|||||||| | |||||||| |||||||| |||||
Sbjct: 533 tcgaactccaccagcacctcgaagtagaatgggtt 499
>gb|CD221639.1|CD221639 CCC1_70_G11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_G11_A007 3', mRNA sequence
Length = 550
Score = 87.7 bits (44), Expect = 1e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 195 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatg 136
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 gcgttgctggcgacgagcaccctgccggagtcggaggtgagccggagc 88
>gb|CN126455.1|CN126455 RHOH1_17_F06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_F06_A002 3', mRNA sequence
Length = 351
Score = 87.7 bits (44), Expect = 1e-015
Identities = 53/56 (94%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 56 aggagtagttcaccagggagcggtacgtggcgcccgggttccagccggcggggatg 1
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
|||||||| |||||| ||||||||||||||
Sbjct: 137 tcctcctcatcttctgacaccgcctctcgc 108
Score = 40.1 bits (20), Expect = 0.28
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | |||||||| |||||||||||| |||||||
Sbjct: 195 acatcactagggggactgcagaagccgtggagggagggaagaac 152
>gb|CN128728.1|CN128728 RHOH1_31_F05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_31_F05_A002 3', mRNA sequence
Length = 374
Score = 85.7 bits (43), Expect = 5e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 451 aggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggat 505
||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct: 55 aggagtagttcaccagggagcggtacgtggcgcctgggttccagccggcggggat 1
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 67 tcaattctctgaaaggattgcgtggtacagaaaa 100
|||||| ||| |||||||||||||||||| ||||
Sbjct: 344 tcaattatctcaaaggattgcgtggtacaaaaaa 311
Score = 40.1 bits (20), Expect = 0.28
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 191 acatcactaggtg-actgcagagaccgtggagggagtgaagaac 233
||||||||||| | |||||||| |||||||||||| |||||||
Sbjct: 194 acatcactagggggactgcagaagccgtggagggagggaagaac 151
>gb|CD206178.1|CD206178 HS1_21_C02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_C02_A012 3', mRNA sequence
Length = 493
Score = 79.8 bits (40), Expect = 3e-013
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 138 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatg 79
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
||||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 78 gcgttgctggcgaccagcaccctgccggagtcggaggtgagccggagc 31
>gb|CD220424.1|CD220424 CCC1_67_F12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_F12_A007 3', mRNA sequence
Length = 567
Score = 79.8 bits (40), Expect = 3e-013
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 206 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatg 147
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 146 gcgtcgctggcgacgagcaccctgccggagtcggaggtgagccggagc 99
>gb|CN131734.1|CN131734 OX1_2_B01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_2_B01_A002 3', mRNA sequence
Length = 533
Score = 79.8 bits (40), Expect = 3e-013
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 199 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatg 140
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggtcagccggagc 554
||||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 139 gcgttgctggcgacgagcaccctgccagagtcggaggtgagccggagc 92
>gb|CW133289.1|CW133289 104_517_11116679_148_34812_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116679, DNA
sequence
Length = 439
Score = 75.8 bits (38), Expect = 5e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 447 aatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatg 506
||||||| |||||| |||||||| ||||| || ||||| |||| |||| ||||||
Sbjct: 338 aatcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacacggccgggatg 397
Query: 507 acgttgttggcgacgagcaccctgccggagtcggaggt 544
||||| |||||||||||||||||||||||||||||||
Sbjct: 398 gcgttgctggcgacgagcaccctgccggagtcggaggt 435
>gb|CW396909.1|CW396909 fsbb001f085j02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085j02, DNA
sequence
Length = 598
Score = 71.9 bits (36), Expect = 8e-011
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 468 gagcggtacgtggccccggggttccagccggcggggatgacgttgttggcgacgagcacc 527
|||||||||||||| ||||| ||| || ||||||||||||||| |||| |||| | |
Sbjct: 207 gagcggtacgtggcgccgggcgaccaccccgcggggatgacgttggtggccacgaccgtc 148
Query: 528 ctgccggagtcggaggtcagccggagcgagaagggcgcct 567
||||||||| ||||||| || |||| |||||||||||||
Sbjct: 147 ctgccggagccggaggtgaggcggacggagaagggcgcct 108
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 303,972
Number of Sequences: 832831
Number of extensions: 303972
Number of successful extensions: 99541
Number of sequences better than 0.5: 220
Number of HSP's better than 0.5 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99087
Number of HSP's gapped (non-prelim): 430
length of query: 729
length of database: 491,359,669
effective HSP length: 20
effective length of query: 709
effective length of database: 474,703,049
effective search space: 336564461741
effective search space used: 336564461741
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)