BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805202.2.1
(1139 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL166425.1|CL166425 104_362_10809365_116_31799_197 Sorgh... 262 6e-068
gb|CL166424.1|CL166424 104_362_10809365_114_31798_197 Sorgh... 202 5e-050
gb|CW223489.1|CW223489 104_659_11202943_148_37190_026 Sorgh... 200 2e-049
gb|CW366119.1|CW366119 fsbb001f038p12f0 Sorghum methylation... 200 2e-049
gb|CW473388.1|CW473388 fsbb001f228l19f0 Sorghum methylation... 200 2e-049
gb|CW488973.1|CW488973 fsbb001f265k08f0 Sorghum methylation... 200 2e-049
gb|CW181651.1|CW181651 104_596_11163625_148_36652_003 Sorgh... 198 8e-049
gb|CW181650.1|CW181650 104_596_11163625_116_36651_003 Sorgh... 170 2e-040
gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/c... 161 2e-037
gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkal... 161 2e-037
gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated ... 153 4e-035
gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 ... 145 1e-032
gb|CW303784.1|CW303784 104_788_11465424_148_35698_090 Sorgh... 137 3e-030
gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infecte... 129 6e-028
gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Me... 115 9e-024
gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) So... 115 9e-024
gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle... 115 9e-024
gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkal... 107 2e-021
gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorgh... 84 3e-014
gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/c... 78 2e-012
gb|BZ338345.1|BZ338345 ia94f11.g1 WGS-SbicolorF (JM107 adap... 74 3e-011
gb|CW165735.1|CW165735 104_574_11152669_116_36484_059 Sorgh... 48 0.002
gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 ... 48 0.002
gb|BM329363.1|BM329363 PIC1_36_H02.g1_A002 Pathogen-infecte... 48 0.002
gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated ... 48 0.002
gb|CF073329.1|CF073329 FE1_22_C10.g1_A002 Iron-deficient se... 48 0.002
>gb|CL166425.1|CL166425 104_362_10809365_116_31799_197 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809365, DNA
sequence
Length = 611
Score = 262 bits (132), Expect = 6e-068
Identities = 244/280 (87%), Gaps = 11/280 (3%)
Strand = Plus / Plus
Query: 39 acacctatatcagacaagagacgaagaaatacctagttcaacaactaccttcaagaaact 98
|||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 1 acacctatatcagataagagacgaagaaatacctagatcaacaactaccttcatgaaacc 60
Query: 99 agtgaggcacataactagagtccagtgt---gaatacataatttccagcagcatgaaaca 155
| |||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |
Sbjct: 61 attgaggcacataactagagtccagtgtcacgaatacataattttgagcaacatgaaata 120
Query: 156 ttcgcgacatgaccattacat----gagttccatcgccacaacatatctacaacaat--- 208
||| ||||||||||||| || |||||||||||| ||||||||| |||||||||
Sbjct: 121 ttcatgacatgaccattatatgaaggagttccatcgctacaacatatttacaacaatcat 180
Query: 209 -tatggttgtccatctacacaatatcatcgattcagtaggtgcaaaacgcaatcctaata 267
|||||| | || ||||||||||| ||||| || |||||||||||| ||| | ||||||
Sbjct: 181 gcatggttttacagctacacaatattatcgactcggtaggtgcaaaatgcagtgctaata 240
Query: 268 tccagacatcttcctccaaaccgatcctagcacattcctg 307
||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 tccagacatcttcctccaaactgatcctagcacattcctg 280
Score = 202 bits (102), Expect = 5e-050
Identities = 126/134 (94%)
Strand = Plus / Plus
Query: 325 ggttgcctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattc 384
|||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 446 ggttgcctagtattgatattctggattgaagaaaggattcacctcccttgcttcagattc 505
Query: 385 tagttgaatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggtt 444
| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 506 tcgttgaatcctggctctcctttcaacctctacctcctccagaattgagcgctttgggtt 565
Query: 445 cgaactcttaaact 458
|||||||||||||
Sbjct: 566 tgaactcttaaact 579
>gb|CL166424.1|CL166424 104_362_10809365_114_31798_197 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809365, DNA
sequence
Length = 754
Score = 202 bits (102), Expect = 5e-050
Identities = 126/134 (94%)
Strand = Plus / Minus
Query: 325 ggttgcctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattc 384
|||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 534 ggttgcctagtattgatattctggattgaagaaaggattcacctcccttgcttcagattc 475
Query: 385 tagttgaatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggtt 444
| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 474 tcgttgaatcctggctctcctttcaacctctacctcctccagaattgagcgctttgggtt 415
Query: 445 cgaactcttaaact 458
|||||||||||||
Sbjct: 414 tgaactcttaaact 401
Score = 83.8 bits (42), Expect = 3e-014
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 262 ctaatatccagacatcttcctccaaaccgatcctagcacattcctg 307
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 745 ctaatatccagacatcttcctccaaactgatcctagcacattcctg 700
>gb|CW223489.1|CW223489 104_659_11202943_148_37190_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202943, DNA
sequence
Length = 625
Score = 200 bits (101), Expect = 2e-049
Identities = 182/207 (87%), Gaps = 14/207 (6%)
Strand = Plus / Plus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccgccccc 906
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ccccgcgagaacatccatgttgttgaccaagaccttgaggaaagatccggatccgccccc 172
Query: 907 cattccgtagttacccccagcaaaactgcgaaatctgtagaggaatgcgaaggccgaagc 966
||||| | || | | ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 173 cattctgcag-tccgcccagcaaaactgcgaaatctgtggaggaatgcga------gagc 225
Query: 967 cgaactgagatgagcgggagccgctgggtttggtggtctagaacctgctactgcgactgc 1026
||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 226 cgacctgggatgagc-ggagccgctgggtttggtggtctagaac------ctgcgactgc 278
Query: 1027 gagtgagaggccgcctttcgttctctt 1053
||||||| |||||||||||||| ||||
Sbjct: 279 gagtgagtggccgcctttcgttttctt 305
>gb|CW366119.1|CW366119 fsbb001f038p12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038p12, DNA
sequence
Length = 603
Score = 200 bits (101), Expect = 2e-049
Identities = 182/207 (87%), Gaps = 14/207 (6%)
Strand = Plus / Plus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccgccccc 906
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 ccccgcgagaacatccatgttgttgaccaagaccttgaggaaagatccggatccgccccc 116
Query: 907 cattccgtagttacccccagcaaaactgcgaaatctgtagaggaatgcgaaggccgaagc 966
||||| | || | | ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 117 cattctgcag-tccgcccagcaaaactgcgaaatctgtggaggaatgcga------gagc 169
Query: 967 cgaactgagatgagcgggagccgctgggtttggtggtctagaacctgctactgcgactgc 1026
||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 170 cgacctgggatgagc-ggagccgctgggtttggtggtctagaac------ctgcgactgc 222
Query: 1027 gagtgagaggccgcctttcgttctctt 1053
||||||| |||||||||||||| ||||
Sbjct: 223 gagtgagtggccgcctttcgttttctt 249
>gb|CW473388.1|CW473388 fsbb001f228l19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228l19, DNA
sequence
Length = 600
Score = 200 bits (101), Expect = 2e-049
Identities = 182/207 (87%), Gaps = 14/207 (6%)
Strand = Plus / Minus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccgccccc 906
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccccgcgagaacatccatgttgttgaccaagaccttgaggaaagatccggatccgccccc 408
Query: 907 cattccgtagttacccccagcaaaactgcgaaatctgtagaggaatgcgaaggccgaagc 966
||||| | || | | ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 407 cattctgcag-tccgcccagcaaaactgcgaaatctgtggaggaatgcga------gagc 355
Query: 967 cgaactgagatgagcgggagccgctgggtttggtggtctagaacctgctactgcgactgc 1026
||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 354 cgacctgggatgagc-ggagccgctgggtttggtggtctagaac------ctgcgactgc 302
Query: 1027 gagtgagaggccgcctttcgttctctt 1053
||||||| |||||||||||||| ||||
Sbjct: 301 gagtgagtggccgcctttcgttttctt 275
>gb|CW488973.1|CW488973 fsbb001f265k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265k08, DNA
sequence
Length = 732
Score = 200 bits (101), Expect = 2e-049
Identities = 182/207 (87%), Gaps = 14/207 (6%)
Strand = Plus / Minus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccgccccc 906
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ccccgcgagaacatccatgttgttgaccaagaccttgaggaaagatccggatccgccccc 614
Query: 907 cattccgtagttacccccagcaaaactgcgaaatctgtagaggaatgcgaaggccgaagc 966
||||| | || | | ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 613 cattctgcag-tccgcccagcaaaactgcgaaatctgtggaggaatgcga------gagc 561
Query: 967 cgaactgagatgagcgggagccgctgggtttggtggtctagaacctgctactgcgactgc 1026
||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 cgacctgggatgagc-ggagccgctgggtttggtggtctagaac------ctgcgactgc 508
Query: 1027 gagtgagaggccgcctttcgttctctt 1053
||||||| |||||||||||||| ||||
Sbjct: 507 gagtgagtggccgcctttcgttttctt 481
>gb|CW181651.1|CW181651 104_596_11163625_148_36652_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163625, DNA
sequence
Length = 697
Score = 198 bits (100), Expect = 8e-049
Identities = 115/120 (95%)
Strand = Plus / Plus
Query: 7 agtcaacctcccatggcagtgccacatggtttacacctatatcagacaagagacgaagaa 66
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 566 agtcaacctcccatggcagtgccacatggtttacacctatatcagataagagacgaagaa 625
Query: 67 atacctagttcaacaactaccttcaagaaactagtgaggcacataactagagtccagtgt 126
|||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 626 atacctagatcaacaactaccttcatgaaaccattgaggcacataactagagtccagtgt 685
>gb|CW181650.1|CW181650 104_596_11163625_116_36651_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163625, DNA
sequence
Length = 416
Score = 170 bits (86), Expect = 2e-040
Identities = 179/209 (85%), Gaps = 7/209 (3%)
Strand = Plus / Minus
Query: 7 agtcaacctcccatggcagtgccacatggtttacacctatatcagacaagagacgaagaa 66
||||| |||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct: 221 agtcagcctcccatggcagtgccacatggtttacacctatatcagataagagagtacgaa 162
Query: 67 atacctagttcaacaactaccttcaagaaactagtgaggcacataactagagtccagtg- 125
|| ||||| ||||||||||| |||| ||||| | |||||||||||||||||||||||||
Sbjct: 161 attcctagatcaacaactactttcatgaaaccattgaggcacataactagagtccagtgt 102
Query: 126 --tgaatacataatttccagcagcatgaaacattcgcgacatgaccattacat----gag 179
|||||||||||||| |||| ||||||| |||| | ||||||| ||| || |||
Sbjct: 101 catgaatacataattttgagcaacatgaaatattcatgtcatgaccgttatatgaaggag 42
Query: 180 ttccatcgccacaacatatctacaacaat 208
||||||||| ||||||||| |||| ||||
Sbjct: 41 ttccatcgctacaacatatttacaccaat 13
>gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 5', mRNA sequence
Length = 660
Score = 161 bits (81), Expect = 2e-037
Identities = 344/429 (80%), Gaps = 2/429 (0%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 508 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 449
Query: 530 tcaggtctactt-gattcatccttctttggaatataccagatgtttacaacttgctgatt 588
|||| | ||| | | ||| || ||| |||||| |||||| ||||| || | ||| | ||
Sbjct: 448 tcagatttacctagcttc-tcattccttggaacataccatatgttcactatttggcggtt 390
Query: 589 tacaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaa 648
|||| | |||||| ||||||||| || || |||| ||||| ||||||||| || ||
Sbjct: 389 cacaaacgttggccgcacaaaatggtcgtaaacataagcagcaccattgaaccaaggtaa 330
Query: 649 tactaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtac 708
|| |||||||| || ||||||| ||||||||| ||||| || |||||||| |||| |
Sbjct: 329 gaccaaccagcagttaaagaacaactttgcatatgaccaaaatggaagccactcgataat 270
Query: 709 cggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagcca 768
|||||||| || ||||| || | ||||||||||||||||| ||||||||| ||||||||
Sbjct: 269 tggagcaaaagttagctcaaacaaagtgataaatgagtacaacacccagtaagtgagcca 210
Query: 769 ttgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
||||| ||||| |||| | ||| || || |||||||||||||| ||||| ||||||||
Sbjct: 209 ctgctggtcatctacaggatttttggtctctattgctctaacagaagcatatagaggata 150
Query: 829 cgcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaa 888
|||||||| | | ||||| || |||||||| | |||||| ||| |||||||||||
Sbjct: 149 tgcaagtgatatgagtggccctgctaggacatcgaagttgttagccagcaccttgaggaa 90
Query: 889 agatccgga 897
|||||||||
Sbjct: 89 agatccgga 81
>gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_D12_A002 5', mRNA sequence
Length = 760
Score = 161 bits (81), Expect = 2e-037
Identities = 344/429 (80%), Gaps = 2/429 (0%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 500 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 441
Query: 530 tcaggtctactt-gattcatccttctttggaatataccagatgtttacaacttgctgatt 588
|||| | ||| | | ||| || ||| |||||| |||||| ||||| || | ||| | ||
Sbjct: 440 tcagatttacctagcttc-tcattccttggaacataccatatgttcactatttggcggtt 382
Query: 589 tacaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaa 648
|||| | |||||| ||||||||| || || |||| ||||| ||||||||| || ||
Sbjct: 381 cacaaacgttggccgcacaaaatggtcgtaaacataagcagcaccattgaaccaaggtaa 322
Query: 649 tactaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtac 708
|| |||||||| || ||||||| ||||||||| ||||| || |||||||| |||| |
Sbjct: 321 gaccaaccagcagttaaagaacaactttgcatatgaccaaaatggaagccactcgataat 262
Query: 709 cggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagcca 768
|||||||| || ||||| || | ||||||||||||||||| ||||||||| ||||||||
Sbjct: 261 tggagcaaaagttagctcaaacaaagtgataaatgagtacaacacccagtaagtgagcca 202
Query: 769 ttgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
||||| ||||| |||| | ||| || || |||||||||||||| ||||| ||||||||
Sbjct: 201 ctgctggtcatctacaggatttttggtctctattgctctaacagaagcatatagaggata 142
Query: 829 cgcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaa 888
|||||||| | | ||||| || |||||||| | |||||| ||| |||||||||||
Sbjct: 141 tgcaagtgatatgagtggccctgctaggacatcgaagttgttagccagcaccttgaggaa 82
Query: 889 agatccgga 897
|||||||||
Sbjct: 81 agatccgga 73
>gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 5', mRNA sequence
Length = 580
Score = 153 bits (77), Expect = 4e-035
Identities = 330/412 (80%), Gaps = 2/412 (0%)
Strand = Plus / Minus
Query: 487 tccattttgctcaatgtacctctgtgcagctgaaattacatcatcaggtcta-cttgatt 545
||||||||||||||| || |||| ||||||||| | |||||||||| | || || | ||
Sbjct: 567 tccattttgctcaatatatctctctgcagctgacagaacatcatcagatttacctagctt 508
Query: 546 catccttctttggaatataccagatgtttacaacttgctgatttacaatcattggcctca 605
| || ||| |||||| |||||| ||||| || | | | | || |||| | |||||| ||
Sbjct: 507 c-tcattccttggaacataccatatgttcactattnggcggttcacaaacgttggccgca 449
Query: 606 caaaatgctcatatacatgtgcagctccattgaactgtggcaatactaaccagcaattga 665
||||||| || || |||| ||||| ||||||||| || || || |||||||| || |
Sbjct: 448 caaaatggtcgtaaacataagcagcaccattgaaccaaggtaagaccaaccagcagttaa 389
Query: 666 agaacagctttgcataagaccagaaaggaagccattcgagtaccggagcaaaggtgagct 725
|||||| ||||||||| ||||| || |||||||| |||| | |||||||| || ||||
Sbjct: 388 agaacaactttgcatatgaccaaaatggaagccactcgataattggagcaaaagttagct 329
Query: 726 cgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccacag 785
| || | ||||||||||||||||| ||||||||| |||||||| ||||| ||||| ||||
Sbjct: 328 caaacaaagtgataaatgagtacaacacccagtaagtgagccactgctggtcatctacag 269
Query: 786 cagattttgtttcaattgctctaacagaggcatacagaggatacgcaagtgaaaccaaag 845
| ||| || || |||||||||||||| ||||| |||||||| |||||||| | | |
Sbjct: 268 gatttttggtctctattgctctaacagaagcatatagaggatatgcaagtgatatgagtg 209
Query: 846 gccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccgga 897
|||| || |||||||| | |||||| ||| ||||||||||||||||||||
Sbjct: 208 gccctgctaggacatcgaagttgttagccagcaccttgaggaaagatccgga 157
>gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 145 bits (73), Expect = 1e-032
Identities = 297/369 (80%), Gaps = 2/369 (0%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 390 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 331
Query: 530 tcaggtctactt-gattcatccttctttggaatataccagatgtttacaacttgctgatt 588
|||| | ||| | | ||| || ||| |||||| |||||| ||||| || | ||| | ||
Sbjct: 330 tcagatttacctagcttc-tcattccttggaacataccatatgttcactatttggcggtt 272
Query: 589 tacaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaa 648
|||| | |||||| ||||||||| || || |||| ||||| ||||||||| || ||
Sbjct: 271 cacaaacgttggccgcacaaaatggtcgtaaacataagcagcaccattgaaccaaggtaa 212
Query: 649 tactaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtac 708
|| |||||||| || ||||||| ||||||||| ||||| || |||||||| |||| |
Sbjct: 211 gaccaaccagcagttaaagaacaactttgcatatgaccaaaatggaagccactcgataat 152
Query: 709 cggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagcca 768
|||||||| || ||||| || | ||||||||||||||||| ||||||||| ||||||||
Sbjct: 151 tggagcaaaagttagctcaaacaaagtgataaatgagtacaacacccagtaagtgagcca 92
Query: 769 ttgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
||||| ||||| |||| | ||| || || |||||||||||||| ||||| ||||||||
Sbjct: 91 ctgctggtcatctacaggatttttggtctctattgctctaacagaagcatatagaggata 32
Query: 829 cgcaagtga 837
||||||||
Sbjct: 31 tgcaagtga 23
>gb|CW303784.1|CW303784 104_788_11465424_148_35698_090 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11465424, DNA sequence
Length = 609
Score = 137 bits (69), Expect = 3e-030
Identities = 75/77 (97%)
Strand = Plus / Minus
Query: 7 agtcaacctcccatggcagtgccacatggtttacacctatatcagacaagagacgaagaa 66
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 77 agtcaacctcccatggcagtgccacatggtttacacctatatcagataagagacgaagaa 18
Query: 67 atacctagttcaacaac 83
|||||||| ||||||||
Sbjct: 17 atacctagatcaacaac 1
>gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 456
Score = 129 bits (65), Expect = 6e-028
Identities = 200/245 (81%)
Strand = Plus / Minus
Query: 653 aaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtaccgga 712
|||||||| || ||||||| ||||||||| | ||| || |||||||| |||| | |||
Sbjct: 365 aaccagcagttaaagaacaactttgcatatgtccaaaatggaagccactcgataattgga 306
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| || ||||| || | ||||||||||||||||| ||||||||| |||||||| |||
Sbjct: 305 gcaaaagttagctcaaacaaagtgataaatgagtacaacacccagtaagtgagccactgc 246
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatacgca 832
|| ||||| |||| | ||| || || |||||||||||||| ||||| |||||||| |||
Sbjct: 245 tggtcatctacaggatttttggtctctattgctctaacagaagcatatagaggatatgca 186
Query: 833 agtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaagat 892
||||| | | |||| || |||||||| | |||||| ||| |||||||||||||||
Sbjct: 185 agtgatatgagtggccgtgctaggacatcgaagttgttagccagcaccttgaggaaagat 126
Query: 893 ccgga 897
|||||
Sbjct: 125 ccgga 121
>gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 499
Score = 115 bits (58), Expect = 9e-024
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 740 aatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttgtttca 799
||||||||||| ||||| || ||||||||||| |||||||||||||||||||| || ||
Sbjct: 353 aatgagtacaggacccaatatgtgagccattgttgatcatccacagcagatttggtctct 294
Query: 800 attgctctaacagaggcatacagaggatacgcaagtgaaaccaaaggccccgcgaggaca 859
||||| |||| |||||||||| |||||| || |||| ||||||||||| || |||||
Sbjct: 293 attgccttaacggaggcatacaaaggataagccagtgccaccaaaggccctgcaaggacg 234
Query: 860 tccatgttgttgaccaagaccttgaggaaagatccgga 897
|| | ||||||| | | ||||||||| | |||||||||
Sbjct: 233 tcgaagttgttggcgacgaccttgagcagagatccgga 196
>gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 504
Score = 115 bits (58), Expect = 9e-024
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 740 aatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttgtttca 799
||||||||||| ||||| || ||||||||||| ||||||||||||| |||||| || ||
Sbjct: 363 aatgagtacaggacccaatatgtgagccattgttgatcatccacaggagatttggtctct 304
Query: 800 attgctctaacagaggcatacagaggatacgcaagtgaaaccaaaggccccgcgaggaca 859
||||| |||| |||||||||| |||||| || |||| ||||||||||| || |||||
Sbjct: 303 attgccttaacggaggcatacaaaggataagccagtgccaccaaaggccctgcaaggacg 244
Query: 860 tccatgttgttgaccaagaccttgaggaaagatccgga 897
|| | ||||||| | | ||||||||| |||||||||||
Sbjct: 243 tcgaagttgttggcgacgaccttgagcaaagatccgga 206
>gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 453
Score = 115 bits (58), Expect = 9e-024
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 740 aatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttgtttca 799
||||||||||| ||||| || ||||||||||| ||||||||||||| |||||| || ||
Sbjct: 351 aatgagtacaggacccaatatgtgagccattgttgatcatccacaggagatttggtctct 292
Query: 800 attgctctaacagaggcatacagaggatacgcaagtgaaaccaaaggccccgcgaggaca 859
||||| |||| |||||||||| |||||| || |||| ||||||||||| || |||||
Sbjct: 291 attgccttaacggaggcatacaaaggataagccagtgccaccaaaggccctgcaaggacg 232
Query: 860 tccatgttgttgaccaagaccttgaggaaagatccgga 897
|| | ||||||| | | ||||||||| |||||||||||
Sbjct: 231 tcgaagttgttggcgacgaccttgagcaaagatccgga 194
>gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_G11_A002 5', mRNA sequence
Length = 778
Score = 107 bits (54), Expect = 2e-021
Identities = 132/158 (83%)
Strand = Plus / Minus
Query: 740 aatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttgtttca 799
|||| |||||| ||||| || ||||||||||| ||||||||||||| |||||| || ||
Sbjct: 373 aatgggtacaggacccaatatgtgagccattgttgatcatccacaggagatttggtctct 314
Query: 800 attgctctaacagaggcatacagaggatacgcaagtgaaaccaaaggccccgcgaggaca 859
||||| |||| |||||||||| |||||| || |||| ||||||||||| || |||||
Sbjct: 313 attgccttaacggaggcatacaaaggataagccagtgccaccaaaggccctgcaaggacg 254
Query: 860 tccatgttgttgaccaagaccttgaggaaagatccgga 897
|| | ||||||| | | ||||||||| |||||||||||
Sbjct: 253 tcgaagttgttggcgacgaccttgagcaaagatccgga 216
>gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152669, DNA
sequence
Length = 690
Score = 83.8 bits (42), Expect = 3e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 710 ggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccat 769
|||||||| || ||||| || | ||||||||||||||||| ||||||||| ||||||||
Sbjct: 214 ggagcaaaagttagctcaaacaaagtgataaatgagtacaacacccagtaagtgagccac 155
Query: 770 tgctgatcatccacagcagattttgtttcaattgctctaacagaggcata 819
||||| ||||| |||| | ||| || || |||||||||||||| |||||
Sbjct: 154 tgctggtcatctacaggatttttggtctctattgctctaacagaagcata 105
Score = 60.0 bits (30), Expect = 5e-007
Identities = 182/230 (79%), Gaps = 2/230 (0%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 586 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 527
Query: 530 tcaggtcta-cttgattcatccttctttggaatataccagatgtttacaacttgctgatt 588
|||| | || || | ||| || ||| |||||| |||||| ||||| || | ||| | ||
Sbjct: 526 tcagatttacctagcttc-tcattccttggaacataccatatgttcactatttggcggtt 468
Query: 589 tacaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaa 648
|||| | |||||| ||||||||| || || |||| ||||| ||||||||| || ||
Sbjct: 467 cacaaacgttggccgcacaaaatggtcgtaaacataagcagcaccattgaaccaaggtaa 408
Query: 649 tactaaccagcaattgaagaacagctttgcataagaccagaaaggaagcc 698
|| |||||||| || ||||||| ||||||||| ||||| || |||||||
Sbjct: 407 gaccaaccagcagttaaagaacaactttgcatatgaccaaaatggaagcc 358
>gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 3', mRNA sequence
Length = 671
Score = 77.8 bits (39), Expect = 2e-012
Identities = 221/279 (79%), Gaps = 2/279 (0%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 278 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 219
Query: 530 tcaggtctactt-gattcatccttctttggaatataccagatgtttacaacttgctgatt 588
|||| | ||| | | ||| || ||| |||||| |||||| ||||| || | ||| | ||
Sbjct: 218 tcagatttacctagcttc-tcattccttggaacataccatatgttcactatttggcggtt 160
Query: 589 tacaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaa 648
|||| | |||||| ||||||||| || || |||| ||||| ||||||||| || ||
Sbjct: 159 cacaaacgttggccgcacaaaatggtcgtaaacataagcagcaccattgaaccaaggtaa 100
Query: 649 tactaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtac 708
|| |||||||| || ||||||| ||||||||| ||||| || |||||||| |||| |
Sbjct: 99 gaccaaccagcagttaaagaacaactttgcatatgaccaaaatggaagccactcgataat 40
Query: 709 cggagcaaaggtgagctcgaatagagtgataaatgagta 747
|||||||| || ||||| || | |||||||||||||||
Sbjct: 39 tggagcaaaagttagctcaaacaaagtgataaatgagta 1
>gb|BZ338345.1|BZ338345 ia94f11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia94f11 5', DNA sequence
Length = 714
Score = 73.8 bits (37), Expect = 3e-011
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 740 aatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttgtttca 799
||||||||||| ||||| || ||||||||||| ||||||||||||| |||||| || ||
Sbjct: 323 aatgagtacaggacccaatatgtgagccattgttgatcatccacaggagatttggtctct 264
Query: 800 attgctctaacagaggcatac 820
||||| |||| |||||||||
Sbjct: 263 attgccttaacggaggcatac 243
>gb|CW165735.1|CW165735 104_574_11152669_116_36484_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152669, DNA
sequence
Length = 678
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 539 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 598
Query: 530 tcag 533
||||
Sbjct: 599 tcag 602
>gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 169 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 110
Query: 530 tcag 533
||||
Sbjct: 109 tcag 106
>gb|BM329363.1|BM329363 PIC1_36_H02.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 498
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 98 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 39
Query: 530 tcag 533
||||
Sbjct: 38 tcag 35
>gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 3', mRNA sequence
Length = 560
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 173 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 114
Query: 530 tcag 533
||||
Sbjct: 113 tcag 110
>gb|CF073329.1|CF073329 FE1_22_C10.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_22_C10_A002 5', mRNA sequence
Length = 605
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| | ||||||||||||||| || |||| ||||||||| | ||||||
Sbjct: 505 ttctcaaatgcttccggtccattttgctcaatatatctctctgcagctgacagaacatca 564
Query: 530 tcag 533
||||
Sbjct: 565 tcag 568
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 282,114
Number of Sequences: 832831
Number of extensions: 282114
Number of successful extensions: 77457
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77385
Number of HSP's gapped (non-prelim): 57
length of query: 1139
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1119
effective length of database: 474,703,049
effective search space: 531192711831
effective search space used: 531192711831
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)