BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804904.2.3
(801 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF071464.1|CF071464 FE1_13_E02.g1_A002 Iron-deficient se... 793 0.0
gb|CD429957.1|CD429957 ETH1_16_F11.g1_A002 Ethylene-treated... 787 0.0
gb|CD429909.1|CD429909 ETH1_16_F11.b1_A002 Ethylene-treated... 712 0.0
gb|BG049369.1|BG049369 OV1_19_B02.g1_A002 Ovary 1 (OV1) Sor... 696 0.0
gb|AW287207.2|AW287207 LG1_267_H05.b1_A002 Light Grown 1 (L... 660 0.0
gb|BG240198.1|BG240198 OV1_19_B02.b1_A002 Ovary 1 (OV1) Sor... 595 e-168
gb|AW284103.1|AW284103 LG1_267_H05.g1_A002 Light Grown 1 (L... 587 e-166
gb|BG240200.1|BG240200 OV1_19_B04.b1_A002 Ovary 1 (OV1) Sor... 571 e-161
gb|BG049371.1|BG049371 OV1_19_B04.g1_A002 Ovary 1 (OV1) Sor... 555 e-156
gb|BQ655982.1|BQ655982 pRC0201 Sorghum halepense rhizome cD... 539 e-151
gb|BI141563.1|BI141563 IP1_54_A05.b1_A002 Immature pannicle... 509 e-142
gb|CF758316.1|CF758316 DSAF1_30_C04.g1_A011 Drought-stresse... 494 e-138
gb|BI141561.1|BI141561 IP1_54_A03.b1_A002 Immature pannicle... 482 e-134
gb|BI141217.1|BI141217 IP1_44_G02.b1_A002 Immature pannicle... 474 e-132
gb|CF756543.1|CF756543 DSAF1_6_E06.b1_A011 Drought-stressed... 432 e-119
gb|CF759227.1|CF759227 DSAF1_42_E08.b1_A011 Drought-stresse... 430 e-119
gb|CF758631.1|CF758631 DSAF1_34_F07.g1_A011 Drought-stresse... 418 e-115
gb|AW564981.1|AW564981 LG1_313_D01.b1_A002 Light Grown 1 (L... 410 e-113
gb|AW924401.1|AW924401 WS1_69_D08.b1_A002 Water-stressed 1 ... 410 e-113
gb|BE363727.1|BE363727 WS1_69_D08.g2_A002 Water-stressed 1 ... 410 e-113
gb|BG048507.1|BG048507 OV1_14_D09.g2_A002 Ovary 1 (OV1) Sor... 410 e-113
gb|BG048579.1|BG048579 OV1_14_D09.b1_A002 Ovary 1 (OV1) Sor... 402 e-110
gb|BI141301.1|BI141301 IP1_54_A05.g1_A002 Immature pannicle... 402 e-110
gb|CF756620.1|CF756620 DSAF1_6_E06.g1_A011 Drought-stressed... 400 e-110
gb|BI099634.1|BI099634 IP1_44_G02.g1_A002 Immature pannicle... 394 e-108
gb|CD207838.1|CD207838 HS1_35_D06.b1_A012 Heat-shocked seed... 394 e-108
gb|BI141299.1|BI141299 IP1_54_A03.g1_A002 Immature pannicle... 315 3e-084
gb|AW924449.1|AW924449 WS1_69_D08.g1_A002 Water-stressed 1 ... 258 7e-067
gb|BE352900.1|BE352900 LG1_313_F01.g1_A002 Light Grown 1 (L... 254 1e-065
gb|CW094282.1|CW094282 104_457_11000221_116_37473_051 Sorgh... 182 3e-044
gb|BG239822.1|BG239822 OV1_29_D11.g1_A002 Ovary 1 (OV1) Sor... 167 2e-039
gb|CW119547.1|CW119547 104_496_11108830_148_34635_087 Sorgh... 155 7e-036
gb|CL196012.1|CL196012 104_421_10942777_116_32314_001 Sorgh... 143 3e-032
gb|CW140068.1|CW140068 104_530_11135584_116_34913_056 Sorgh... 143 3e-032
gb|CW328843.1|CW328843 104_825_11479523_116_35999_046 Sorgh... 143 3e-032
gb|CW328844.1|CW328844 104_825_11479523_148_36000_046 Sorgh... 143 3e-032
gb|CW501006.1|CW501006 fsbb001f296j14f0 Sorghum methylation... 143 3e-032
gb|AI723767.1|AI723767 RHIZ1_11_F12.y1_A001 Rhizome1 (RHIZ1... 129 4e-028
gb|CL196011.1|CL196011 104_421_10942777_114_32310_001 Sorgh... 119 4e-025
gb|CW119546.1|CW119546 104_496_11108830_116_34639_087 Sorgh... 117 2e-024
gb|CW094283.1|CW094283 104_457_11000221_148_37474_051 Sorgh... 111 1e-022
gb|CW501007.1|CW501007 fsbb001f296j14k0 Sorghum methylation... 111 1e-022
gb|CW186014.1|CW186014 104_603_11166347_148_36698_034 Sorgh... 46 0.005
gb|CW408842.1|CW408842 fsbb001f102o12k0 Sorghum methylation... 46 0.005
gb|CW419449.1|CW419449 fsbb001f124e24f0 Sorghum methylation... 46 0.005
gb|CW408841.1|CW408841 fsbb001f102o12f0 Sorghum methylation... 44 0.020
>gb|CF071464.1|CF071464 FE1_13_E02.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_13_E02_A002 5', mRNA sequence
Length = 649
Score = 793 bits (400), Expect = 0.0
Identities = 590/650 (90%), Gaps = 10/650 (1%)
Strand = Plus / Plus
Query: 19 ggacttccgccgcgcttcgccctctcgctccagccgcttcacagcgccgccgc------t 72
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 2 ggacttccgccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgcagct 61
Query: 73 cgcctctccgactgccgcgagaatgccgttcaagaggttcgtggagatcgggcgcgtggc 132
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgcctctccgaccgccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggc 121
Query: 133 ccttgtgaactacggcaaagactacggccgcctcgtcgtcatcgtcgatgtggtcgacca 192
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 122 cctggtgaactacggcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgacca 181
Query: 193 gaacagggcacttgtggacgcccctgatatggtcaggtgccagattaacttcaaacggct 252
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||
Sbjct: 182 gaacagggcacttgtggacgcccctgatatgatcaggtgccagataaacttcaagcgtct 241
Query: 253 ctcacttaccgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaa 312
|||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 242 ttcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaa 301
Query: 313 ggctatggaggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagct 372
||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct: 302 ggcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagct 361
Query: 373 gattgtccagaagaggagggctgcactcagtgactttgacaggttcaaggtcatgctggc 432
||| || |||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 362 gatcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggc 421
Query: 433 aaggatcaagaggggtggtgctatcaggcaagagctctccaagctgaagaaggcgtccac 492
|| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 422 aaagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggcatccac 481
Query: 493 tgcttaagtcccttttggtggatgacatgtta--gtttttggtttcatgttggatcagca 550
||||| ||| | || ||||||| ||||||| |||||||||| |||| |||||||
Sbjct: 482 ggctta-gtctccttcagtggatggcatgttacagtttttggttctgagttgtatcagca 540
Query: 551 atttgttttgagtgttgtcaaagccagaattagtaatatgtttcctgtgtaccagtttca 610
||| | | ||| |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 541 attcgatc-gagcgttgtcaaagccagaattagtaatatgtttcctgtgaacccatttca 599
Query: 611 aacttcatcaagaatgggtgtgctctggatattttgtcgggaatgatatg 660
||||| ||||| ||||||||| |||||||||||||||| ||||| ||||
Sbjct: 600 aactttgtcaagcatgggtgtgttctggatattttgtcgtgaatgttatg 649
>gb|CD429957.1|CD429957 ETH1_16_F11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_F11_A002 5', mRNA sequence
Length = 694
Score = 787 bits (397), Expect = 0.0
Identities = 600/663 (90%), Gaps = 11/663 (1%)
Strand = Plus / Plus
Query: 9 gtttctgttcggacttccgccgcgcttcgccctctcgctccagccgcttcacagcgccgc 68
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 6 gtttctgtttggacttccgccgcgcttcgccctctcgctc-agccgcttcacagcgtcgc 64
Query: 69 cgc------tcgcctctccgactgccgcgagaatgccgttcaagaggttcgtggagatcg 122
||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 65 cgccgcagctcgcctctccgaccgccgcgaggatgccgttcaagaggttcgtggagatcg 124
Query: 123 ggcgcgtggcccttgtgaactacggcaaagactacggccgcctcgtcgtcatcgtcgatg 182
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 125 ggcgcgtggccctggtgaactacggcaaggactatggccgcctcgtcgtcatcgtcgatg 184
Query: 183 tggtcgaccagaacagggcacttgtggacgcccctgatatggtcaggtgccagattaact 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 185 tggtcgaccagaacagggcacttgtggacgcccctgatatgatcaggtgccagataaact 244
Query: 243 tcaaacggctctcacttaccgacatcaagattgacatcaaacgtgtccccaagaagtcaa 302
|||| || || |||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 245 tcaagcgtctttcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaa 304
Query: 303 ccttgatcaaggctatggaggaagctgatgtgaagactaagtgggagaacagctcatggg 362
|| |||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 305 ccctgatcaaggcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggg 364
Query: 363 gcaagaagctgattgtccagaagaggagggctgcactcagtgactttgacaggttcaagg 422
||||||||||||| || |||||||||||||| || |||| ||||||||||||||||||||
Sbjct: 365 gcaagaagctgatcgttcagaagaggagggcagcgctcaatgactttgacaggttcaagg 424
Query: 423 tcatgctggcaaggatcaagaggggtggtgctatcaggcaagagctctccaagctgaaga 482
|||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 425 tcatgctggcaaagaccaagaggggtggtgctatcaggcaagagctcgccaagctgaaga 484
Query: 483 aggcgtccactgcttaagtcccttttggtggatgacatgtta--gtttttggtttcatgt 540
|||| ||||| ||||| ||| | || ||||||| ||||||| |||||||||| ||
Sbjct: 485 aggcatccacggctta-gtctccttcagtggatggcatgttacagtttttggttctgagt 543
Query: 541 tggatcagcaatttgttttgagtgttgtcaaagccagaattagtaatatgtttcctgtgt 600
|| |||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgtatcagcaattcgatc-gagtgttgtcaaagccagaattagtaatatgtttcctgtga 602
Query: 601 accagtttcaaacttcatcaagaatgggtgtgctctggatattttgtcgggaatgatatg 660
||| || ||||||| ||||| ||||||||| |||||||||||||||| ||||| ||||
Sbjct: 603 acccattccaaactttgtcaagcatgggtgtgttctggatattttgtcgtgaatgttatg 662
Query: 661 gaa 663
|||
Sbjct: 663 gaa 665
>gb|CD429909.1|CD429909 ETH1_16_F11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_F11_A002 3', mRNA sequence
Length = 602
Score = 712 bits (359), Expect = 0.0
Identities = 532/586 (90%), Gaps = 4/586 (0%)
Strand = Plus / Plus
Query: 80 ccgactgccgcgagaatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtg 139
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 ccgaccgccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtg 60
Query: 140 aactacggcaaagactacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagg 199
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactacggcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagg 120
Query: 200 gcacttgtggacgcccctgatatggtcaggtgccagattaacttcaaacggctctcactt 259
|||||||||||||||||||||||| ||||||||||||| |||||||| || || ||||||
Sbjct: 121 gcacttgtggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcactt 180
Query: 260 accgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatg 319
|| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct: 181 actgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatg 240
Query: 320 gaggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagctgattgtc 379
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 241 gaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgtt 300
Query: 380 cagaagaggagggctgcactcagtgactttgacaggttcaaggtcatgctggcaaggatc 439
|||||||||||||| || |||| |||||||||||||||||||||||||||||||| || |
Sbjct: 301 cagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggcaaagacc 360
Query: 440 aagaggggtggtgctatcaggcaagagctctccaagctgaagaaggcgtccactgcttaa 499
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct: 361 aagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggcatccacggctta- 419
Query: 500 gtcccttttggtggatgacatgtta--gtttttggtttcatgttggatcagcaatttgtt 557
||| | || ||||||| ||||||| |||||||||| |||| |||||||||| | |
Sbjct: 420 gtctccttcagtggatggcatgttacagtttttggttctgagttgtatcagcaattcgat 479
Query: 558 ttgagtgttgtcaaagccagaattagtaatatgtttcctgtgtaccagtttcaaacttca 617
|||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct: 480 c-gagtgttgtcaaagccagaattagtaatatgtttcctgtgaacccattccaaactttg 538
Query: 618 tcaagaatgggtgtgctctggatattttgtcgggaatgatatggaa 663
||||| ||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 539 tcaagcatgggtgtgttctggatattttgtcgtgaatgttatggaa 584
>gb|BG049369.1|BG049369 OV1_19_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 696 bits (351), Expect = 0.0
Identities = 509/558 (91%), Gaps = 4/558 (0%)
Strand = Plus / Plus
Query: 100 gttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaagactacgg 159
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 1 gttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacggcaaggactatgg 60
Query: 160 ccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctga 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctga 120
Query: 220 tatggtcaggtgccagattaacttcaaacggctctcacttaccgacatcaagattgacat 279
|||| ||||||||||||| |||||||| || || |||||||| |||||||||||||||||
Sbjct: 121 tatgatcaggtgccagataaacttcaagcgtctttcacttactgacatcaagattgacat 180
Query: 280 caaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgtgaagac 339
||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 181 caaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgacgtgaagac 240
Query: 340 taagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagggctgcact 399
|||||||||||||| |||||||||||||||||||| || |||||||||||||| || ||
Sbjct: 241 caagtgggagaacagttcatggggcaagaagctgatcgttcagaagaggagggcagcgct 300
Query: 400 cagtgactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgctatcag 459
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 301 caatgactttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcag 360
Query: 460 gcaagagctctccaagctgaagaaggcgtccactgcttaagtcccttttggtggatgaca 519
|||||||||| |||||||||||||||| ||||| ||||| ||| | || ||||||| ||
Sbjct: 361 gcaagagctcgccaagctgaagaaggcatccacggctta-gtctccttcagtggatggca 419
Query: 520 tgtta--gtttttggtttcatgttggatcagcaatttgttttgagtgttgtcaaagccag 577
||||| |||||||||| |||| |||||||||| | | ||||||||||||||||||
Sbjct: 420 tgttacagtttttggttctgagttgtatcagcaattcgatc-gagtgttgtcaaagccag 478
Query: 578 aattagtaatatgtttcctgtgtaccagtttcaaacttcatcaagaatgggtgtgctctg 637
|||||||||||||||||||||| ||| |||||||||| ||||| ||||||||| ||||
Sbjct: 479 aattagtaatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttctg 538
Query: 638 gatattttgtcgggaatg 655
|||||||||||| |||||
Sbjct: 539 gatattttgtcgtgaatg 556
>gb|AW287207.2|AW287207 LG1_267_H05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 468
Score = 660 bits (333), Expect = 0.0
Identities = 428/460 (93%), Gaps = 6/460 (1%)
Strand = Plus / Plus
Query: 25 ccgccgcgcttcgccctctcgctccagccgcttcacagcgccgccgc------tcgcctc 78
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 9 ccgccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgcagctcgcctc 68
Query: 79 tccgactgccgcgagaatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgt 138
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 69 tccgaccgccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggt 128
Query: 139 gaactacggcaaagactacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacag 198
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gaactacggcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacag 188
Query: 199 ggcacttgtggacgcccctgatatggtcaggtgccagattaacttcaaacggctctcact 258
||||||||||||||||||||||||| ||||||||||||| |||||||| || || |||||
Sbjct: 189 ggcacttgtggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcact 248
Query: 259 taccgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctat 318
||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct: 249 tactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgat 308
Query: 319 ggaggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagctgattgt 378
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 309 ggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgt 368
Query: 379 ccagaagaggagggctgcactcagtgactttgacaggttcaaggtcatgctggcaaggat 438
|||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||
Sbjct: 369 tcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggcaaagat 428
Query: 439 caagaggggtggtgctatcaggcaagagctctccaagctg 478
|||||||||||| |||||||||||||||||| ||||||||
Sbjct: 429 caagaggggtggcgctatcaggcaagagctcgccaagctg 468
>gb|BG240198.1|BG240198 OV1_19_B02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 426
Score = 595 bits (300), Expect = e-168
Identities = 389/419 (92%), Gaps = 6/419 (1%)
Strand = Plus / Plus
Query: 27 gccgcgcttcgccctctcgctccagccgcttcacagcgccgccgc------tcgcctctc 80
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 8 gccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgcagctcgcctctc 67
Query: 81 cgactgccgcgagaatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtga 140
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 68 cgaccgccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtga 127
Query: 141 actacggcaaagactacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 200
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 actacggcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 187
Query: 201 cacttgtggacgcccctgatatggtcaggtgccagattaacttcaaacggctctcactta 260
||||||||||||||||||||||| ||||||||||||| |||||||| || || |||||||
Sbjct: 188 cacttgtggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcactta 247
Query: 261 ccgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatgg 320
| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct: 248 ctgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatgg 307
Query: 321 aggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagctgattgtcc 380
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |
Sbjct: 308 aggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttc 367
Query: 381 agaagaggagggctgcactcagtgactttgacaggttcaaggtcatgctggcaaggatc 439
||||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 368 agaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggcaaagatc 426
>gb|AW284103.1|AW284103 LG1_267_H05.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 507
Score = 587 bits (296), Expect = e-166
Identities = 451/499 (90%), Gaps = 4/499 (0%)
Strand = Plus / Plus
Query: 167 gtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctgatatggtc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctgatatgatc 60
Query: 227 aggtgccagattaacttcaaacggctctcacttaccgacatcaagattgacatcaaacgt 286
||||||||||| |||||||| || || |||||||| ||||||||||||||||||||||||
Sbjct: 61 aggtgccagataaacttcaagcgtctttcacttactgacatcaagattgacatcaaacgt 120
Query: 287 gtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgtgaagactaagtgg 346
|||||||||||| ||||| |||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 121 gtccccaagaagacaaccctgatcaaggcgatggaggaagctgacgtgaagaccaagtgg 180
Query: 347 gagaacagctcatggggcaagaagctgattgtccagaagaggagggctgcactcagtgac 406
|||||||| |||||||||||||||||||| || |||||||||||||| || |||| ||||
Sbjct: 181 gagaacagttcatggggcaagaagctgatcgttcagaagaggagggcagcgctcaatgac 240
Query: 407 tttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgctatcaggcaagag 466
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 241 tttgacaggttcaaggtcatgctggcaaagatcaagaggggtggcgctatcaggcaagag 300
Query: 467 ctctccaagctgaagaaggcgtccactgcttaagtcccttttggtggatgacatgtta-- 524
||| |||||||||||||||| ||||| ||||| ||| | || ||||||| |||||||
Sbjct: 301 ctcgccaagctgaagaaggcatccacggctta-gtctccttcagtggatggcatgttaca 359
Query: 525 gtttttggtttcatgttggatcagcaatttgttttgagtgttgtcaaagccagaattagt 584
|||||||||| |||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 360 gtttttggttctgagttgtatcagcaattcgatc-gagtgttgtcaaagccagaattagt 418
Query: 585 aatatgtttcctgtgtaccagtttcaaacttcatcaagaatgggtgtgctctggatattt 644
||||||||||||||| ||| |||||||||| ||||| ||||||||| |||||||||||
Sbjct: 419 aatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttctggatattt 478
Query: 645 tgtcgggaatgatatggaa 663
||||| ||||| |||||||
Sbjct: 479 tgtcgtgaatgttatggaa 497
>gb|BG240200.1|BG240200 OV1_19_B04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 410
Score = 571 bits (288), Expect = e-161
Identities = 374/403 (92%), Gaps = 6/403 (1%)
Strand = Plus / Plus
Query: 27 gccgcgcttcgccctctcgctccagccgcttcacagcgccgccgc------tcgcctctc 80
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 8 gccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgcagctcgcctctc 67
Query: 81 cgactgccgcgagaatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtga 140
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 68 cgaccgccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtga 127
Query: 141 actacggcaaagactacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 200
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 actacggcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 187
Query: 201 cacttgtggacgcccctgatatggtcaggtgccagattaacttcaaacggctctcactta 260
||||||||||||||||||||||| ||||||||||||| |||||||| || || |||||||
Sbjct: 188 cacttgtggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcactta 247
Query: 261 ccgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatgg 320
| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct: 248 ctgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatgg 307
Query: 321 aggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagctgattgtcc 380
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |
Sbjct: 308 aggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttc 367
Query: 381 agaagaggagggctgcactcagtgactttgacaggttcaaggt 423
||||||||||||| || |||| |||||||||||||||||||||
Sbjct: 368 agaagaggagggcagcgctcaatgactttgacaggttcaaggt 410
>gb|BG049371.1|BG049371 OV1_19_B04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 474
Score = 555 bits (280), Expect = e-156
Identities = 430/475 (90%), Gaps = 5/475 (1%)
Strand = Plus / Plus
Query: 166 cgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctgatatggt 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 cgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctgatatgat 60
Query: 226 caggtgccagattaacttcaaacggctctcacttaccgacatcaagattgacatcaaacg 285
|||||||||||| |||||||| || || |||||||| |||||||||||||||||||||||
Sbjct: 61 caggtgccagataaacttcaagcgtctttcacttactgacatcaagattgacatcaaacg 120
Query: 286 tgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgtgaagactaagtg 345
||||||||||||| ||||| |||||||||| |||||||||||||| |||||||| |||||
Sbjct: 121 tgtccccaagaagacaaccctgatcaaggcgatggaggaagctgacgtgaagaccaagtg 180
Query: 346 ggagaacagctcatggggcaagaagctgattgtccagaagaggagggctgcactcagtga 405
||||||||| |||||||||||||||||||| || |||||||||||||| || |||| |||
Sbjct: 181 ggagaacagttcatggggcaagaagctgatcgttcagaagaggagggcagcgctcaatga 240
Query: 406 ctttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgctatcaggcaaga 465
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 ctttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcaggcaaga 300
Query: 466 gctctccaagctgaagaaggcgtccactgcttaagtcccttttggtggatgacatgtta- 524
|||| |||||||||||||||| ||||| ||||| ||| | || ||||||| |||||||
Sbjct: 301 gctcgccaagctgaagaaggcatccacggctta-gtctccttcagtggatggcatgttac 359
Query: 525 -gtttttggtttcatgttggatcagcaatttgttttgagtgttgtcaaagccagaattag 583
|||||||||| |||| |||||||||| | | ||||||||||||||||||||||||
Sbjct: 360 agtttttggttctgagttgtatcagcaattcgatc-gagtgttgtcaaagccagaattag 418
Query: 584 taatatgtttcctgtgtaccagtttcaaacttcatcaaga-atgggtgtgctctg 637
|||||||||||||||| ||| |||||||||| |||||| ||||||||| ||||
Sbjct: 419 taatatgtttcctgtgaacccatttcaaactttgtcaagacatgggtgtgttctg 473
>gb|BQ655982.1|BQ655982 pRC0201 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0201, mRNA sequence
Length = 533
Score = 539 bits (272), Expect = e-151
Identities = 456/511 (89%), Gaps = 6/511 (1%)
Strand = Plus / Plus
Query: 169 cgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctgatatggtcag 228
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 22 cgtcatcgtcgatgtggtcgaccataacagggcacttgtggacgcccctgatatgatcag 81
Query: 229 gtgccagattaacttcaaacggctctcacttaccgacatcaagattgacatcaaacgtgt 288
||||||||| |||||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct: 82 gtgccagataaacttcaagcgtctttcacttactgacatcaagattgacatcaaacgtgt 141
Query: 289 ccccaagaagtcaaccttgatcaaggct-atggaggaagctgatgtgaagactaagtggg 347
|||||||||| ||||| |||||||||| |||||||||||||| |||||||| |||||||
Sbjct: 142 ccccaagaagacaaccctgatcaaggcagatggaggaagctgacgtgaagaccaagtggg 201
Query: 348 agaacagctcatggggcaagaagctgattgtccagaagaggagggctgcactcagtgact 407
||||||| |||||||||||||||||||| || |||||||||||||| || |||| |||||
Sbjct: 202 agaacagttcatggggcaagaagctgatcgttcagaagaggagggcagcgctcaatgact 261
Query: 408 ttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgctatcaggcaagagc 467
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 262 ttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcacgcaagagc 321
Query: 468 tctccaagctgaagaaggcgtccactgcttaagtcccttttggtggatgacatgtt--ag 525
|| |||||||||||||||| ||||| |||| |||| | || ||||||| |||||| ||
Sbjct: 322 tcgccaagctgaagaaggcatccacggctt-agtctc-cttagtggatggcatgttacag 379
Query: 526 tttttggtttcatgttggatcagcaatttgttttgagtgttgtcaaagccagaattagta 585
||||||||| |||| |||||||||| | | ||||||||||||||||||||||||||
Sbjct: 380 tttttggttctgagttgtatcagcaattcg-atcgagtgttgtcaaagccagaattagta 438
Query: 586 atatgtttcctgtgtaccagtttcaaacttcatcaagaatgggtgtgctctggatatttt 645
|||||||||||||| ||| |||||||||| ||||| |||||||| |||||||||||
Sbjct: 439 atatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtattctggatatttc 498
Query: 646 gtcgggaatgatatggaacacttaagttagc 676
|||| ||||| ||||||| | |||||||||
Sbjct: 499 gtcgcgaatgttatggaatatctaagttagc 529
>gb|BI141563.1|BI141563 IP1_54_A05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 368
Score = 509 bits (257), Expect = e-142
Identities = 334/360 (92%), Gaps = 6/360 (1%)
Strand = Plus / Plus
Query: 36 cgccctctcgctccagccgcttcacagcgccgccgc------tcgcctctccgactgccg 89
||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 9 cgccctctcgctccagccgcttcacagcgtcgccgccgcagctcgcctctccgaccgccg 68
Query: 90 cgagaatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggca 149
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 69 cgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacggca 128
Query: 150 aagactacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtgg 209
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtgg 188
Query: 210 acgcccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatca 269
|||||||||||||| ||||||||||||| |||||||| || || |||||||| |||||||
Sbjct: 189 acgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgacatca 248
Query: 270 agattgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctg 329
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 249 agattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctg 308
Query: 330 atgtgaagactaagtgggagaacagctcatggggcaagaagctgattgtccagaagagga 389
| |||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 309 acgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttcagaagagga 368
>gb|CF758316.1|CF758316 DSAF1_30_C04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_C04_A011 3', mRNA sequence
Length = 529
Score = 494 bits (249), Expect = e-138
Identities = 444/504 (88%), Gaps = 5/504 (0%)
Strand = Plus / Plus
Query: 254 tcacttaccgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaag 313
|||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 13 tcacttactgacatcaagattgacatcaaaagtgtccccaagaagacaaccctgatcaag 72
Query: 314 gctatggaggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagctg 373
|| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 73 gcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctg 132
Query: 374 attgtccagaagaggagggctgcactcagtgactttgacaggttcaaggtcatgctggca 433
|| || |||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 133 atcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggca 192
Query: 434 aggatcaagaggggtggtgctatcaggcaagagctctccaagctgaagaaggcgtccact 493
| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 193 aagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggcatccacg 252
Query: 494 gcttaagtcccttttggtggatgacatgtta--gtttttggtttcatgttggatcagcaa 551
||||| ||| | || ||||||| ||||||| |||||||||| |||| ||||||||
Sbjct: 253 gctta-gtctccttcagtggatggcatgttacagtttttggttctgagttgtatcagcaa 311
Query: 552 tttgttttgagtgttgtcaaagccagaattagtaatatgtttcctgtgtaccagtttcaa 611
|| | | |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 312 ttcgatc-gagtgttgtcaaagccagaattagtaatatgtttcctgtgaacccatttcaa 370
Query: 612 acttcatcaagaatgggtgtgctctggatattttgtcgggaatgatatggaacacttaag 671
|||| ||||| ||||||||| |||||||||||||||| ||||| ||||||| | ||||
Sbjct: 371 actttgtcaagcatgggtgtgttctggatattttgtcgtgaatgttatggaatatctaag 430
Query: 672 ttagcttgcgacaaatgtgcattgcttcccatttgagttttgtttattgccagtgttttt 731
|||| || ||||||||||| | ||| | |||| |||||||||||||| |||||||||
Sbjct: 431 gtagcctgtgacaaatgtgcgatccttacaatttctgttttgtttattgctagtgttttt 490
Query: 732 agg-aaaccaggatattggcataa 754
||| || ||||| |||||||||||
Sbjct: 491 aggcaacccagggtattggcataa 514
>gb|BI141561.1|BI141561 IP1_54_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 346
Score = 482 bits (243), Expect = e-134
Identities = 314/338 (92%), Gaps = 6/338 (1%)
Strand = Plus / Plus
Query: 36 cgccctctcgctccagccgcttcacagcgccgccgc------tcgcctctccgactgccg 89
||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 9 cgccctctcgctccagccgcttcacagcgtcgccgccgcagctcgcctctccgaccgccg 68
Query: 90 cgagaatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggca 149
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 69 cgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacggca 128
Query: 150 aagactacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtgg 209
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtgg 188
Query: 210 acgcccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatca 269
|||||||||||||| ||||||||||||| |||||||| || || |||||||| |||||||
Sbjct: 189 acgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgacatca 248
Query: 270 agattgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctg 329
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 249 agattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctg 308
Query: 330 atgtgaagactaagtgggagaacagctcatggggcaag 367
| |||||||| |||||||||||||| ||||||||||||
Sbjct: 309 acgtgaagaccaagtgggagaacagttcatggggcaag 346
>gb|BI141217.1|BI141217 IP1_44_G02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 359
Score = 474 bits (239), Expect = e-132
Identities = 319/346 (92%), Gaps = 6/346 (1%)
Strand = Plus / Plus
Query: 36 cgccctctcgctccagccgcttcacagcgccgccgc------tcgcctctccgactgccg 89
||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 9 cgccctctcgctccagccgcttcacagcgtcgccgccgcagctcgcctctccgaccgccg 68
Query: 90 cgagaatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggca 149
|||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 69 cgaggatgccgttcgagaggttcgtggagatcgggcgcgtggccctggtgaactacggaa 128
Query: 150 aagactacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtgg 209
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtgg 188
Query: 210 acgcccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatca 269
|||||||||||||| ||||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 189 acgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgacatcg 248
Query: 270 agattgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctg 329
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 249 agattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctg 308
Query: 330 atgtgaagactaagtgggagaacagctcatggggcaagaagctgat 375
| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 309 acgtgaagaccaagtgggagaacagttcatggggcaagaagctgat 354
>gb|CF756543.1|CF756543 DSAF1_6_E06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_E06_A011 5', mRNA sequence
Length = 427
Score = 432 bits (218), Expect = e-119
Identities = 349/389 (89%), Gaps = 4/389 (1%)
Strand = Plus / Plus
Query: 254 tcacttaccgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaag 313
|||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 4 tcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaag 63
Query: 314 gctatggaggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagctg 373
|| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 64 gcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctg 123
Query: 374 attgtccagaagaggagggctgcactcagtgactttgacaggttcaaggtcatgctggca 433
|| || |||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 124 atcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggca 183
Query: 434 aggatcaagaggggtggtgctatcaggcaagagctctccaagctgaagaaggcgtccact 493
| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 184 aagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggcatccacg 243
Query: 494 gcttaagtcccttttggtggatgacatgtta--gtttttggtttcatgttggatcagcaa 551
||||| ||| | || ||||||| ||||||| |||||||||| |||| ||||||||
Sbjct: 244 gctta-gtctccttcagtggatggcatgttacagtttttggttctgagttgtatcagcaa 302
Query: 552 tttgttttgagtgttgtcaaagccagaattagtaatatgtttcctgtgtaccagtttcaa 611
|| | | |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 303 ttcgatc-gagtgttgtcaaagccagaattagtaatatgtttcctgtgaacccatttcaa 361
Query: 612 acttcatcaagaatgggtgtgctctggat 640
|||| ||||| ||||||||| |||||||
Sbjct: 362 actttgtcaagcatgggtgtgttctggat 390
>gb|CF759227.1|CF759227 DSAF1_42_E08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_42_E08_A011 5', mRNA sequence
Length = 389
Score = 430 bits (217), Expect = e-119
Identities = 348/388 (89%), Gaps = 4/388 (1%)
Strand = Plus / Plus
Query: 254 tcacttaccgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaag 313
|||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 4 tcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaag 63
Query: 314 gctatggaggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagctg 373
|| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 64 gcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctg 123
Query: 374 attgtccagaagaggagggctgcactcagtgactttgacaggttcaaggtcatgctggca 433
|| || |||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 124 atcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggca 183
Query: 434 aggatcaagaggggtggtgctatcaggcaagagctctccaagctgaagaaggcgtccact 493
| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 184 aagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggcatccacg 243
Query: 494 gcttaagtcccttttggtggatgacatgtta--gtttttggtttcatgttggatcagcaa 551
||||| ||| | || ||||||| ||||||| |||||||||| |||| ||||||||
Sbjct: 244 gctta-gtctccttcagtggatggcatgttacagtttttggttctgagttgtatcagcaa 302
Query: 552 tttgttttgagtgttgtcaaagccagaattagtaatatgtttcctgtgtaccagtttcaa 611
|| | | |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 303 ttcgatc-gagtgttgtcaaagccagaattagtaatatgtttcctgtgaacccatttcaa 361
Query: 612 acttcatcaagaatgggtgtgctctgga 639
|||| ||||| ||||||||| ||||||
Sbjct: 362 actttgtcaagcatgggtgtgttctgga 389
>gb|CF758631.1|CF758631 DSAF1_34_F07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_34_F07_A011 3', mRNA sequence
Length = 463
Score = 418 bits (211), Expect = e-115
Identities = 394/450 (87%), Gaps = 5/450 (1%)
Strand = Plus / Plus
Query: 308 atcaaggctatggaggaagctgatgtgaagactaagtgggagaacagctcatggggcaag 367
|||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 1 atcaaggcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaag 60
Query: 368 aagctgattgtccagaagaggagggctgcactcagtgactttgacaggttcaaggtcatg 427
|||||||| || |||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct: 61 aagctgatcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatg 120
Query: 428 ctggcaaggatcaagaggggtggtgctatcaggcaagagctctccaagctgaagaaggcg 487
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 ctggcaaagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggca 180
Query: 488 tccactgcttaagtcccttttggtggatgacatgtta--gtttttggtttcatgttggat 545
||||| ||||| ||| | || ||||||| ||||||| |||||||||| |||| ||
Sbjct: 181 tccacggctta-gtctccttcagtggatggcatgttacagtttttggttctgagttgtat 239
Query: 546 cagcaatttgttttgagtgttgtcaaagccagaattagtaatatgtttcctgtgtaccag 605
|||||||| | | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 240 cagcaattcgatc-gagtgttgtcaaagccagaattagtaatatgtttcctgtgaaccca 298
Query: 606 tttcaaacttcatcaagaatgggtgtgctctggatattttgtcgggaatgatatggaaca 665
|||||||||| ||||| ||||||||| |||||||||||||||| ||||| ||||||| |
Sbjct: 299 tttcaaactttgtcaagcatgggtgtgttctggatattttgtcgtgaatgttatggaata 358
Query: 666 cttaagttagcttgcgacaaatgtgcattgcttcccatttgagttttgtttattgccagt 725
|||| |||| || ||||||||||| | ||| | |||| |||||||||||||| |||
Sbjct: 359 tctaaggtagcctgtgacaaatgtgcgatccttacaatttctgttttgtttattgctagt 418
Query: 726 gtttttagg-aaaccaggatattggcataa 754
||||||||| || ||||| |||||||||||
Sbjct: 419 gtttttaggcaacccagggtattggcataa 448
>gb|AW564981.1|AW564981 LG1_313_D01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 410 bits (207), Expect = e-113
Identities = 333/375 (88%)
Strand = Plus / Plus
Query: 94 aatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaaga 153
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 30 aatgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaagga 89
Query: 154 ctacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgc 213
|| |||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct: 90 gtatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgc 149
Query: 214 ccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatcaagat 273
|||||| |||||| | ||||| || |||||||| ||||| || || || || ||||||||
Sbjct: 150 ccctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagat 209
Query: 274 tgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgt 333
|||||| ||||||||||| |||||| | || ||||| ||||| |||||||||||||||||
Sbjct: 210 tgacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatgt 269
Query: 334 gaagactaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagggc 393
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 270 gaaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagc 329
Query: 394 tgcactcagtgactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgc 453
| |||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 330 atcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgc 389
Query: 454 tatcaggcaagagct 468
||||||||||||||
Sbjct: 390 catcaggcaagagct 404
>gb|AW924401.1|AW924401 WS1_69_D08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 615
Score = 410 bits (207), Expect = e-113
Identities = 333/375 (88%)
Strand = Plus / Plus
Query: 94 aatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaaga 153
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 56 aatgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaagga 115
Query: 154 ctacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgc 213
|| |||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct: 116 gtatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgc 175
Query: 214 ccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatcaagat 273
|||||| |||||| | ||||| || |||||||| ||||| || || || || ||||||||
Sbjct: 176 ccctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagat 235
Query: 274 tgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgt 333
|||||| ||||||||||| |||||| | || ||||| ||||| |||||||||||||||||
Sbjct: 236 tgacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatgt 295
Query: 334 gaagactaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagggc 393
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 296 gaaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagc 355
Query: 394 tgcactcagtgactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgc 453
| |||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 356 atcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgc 415
Query: 454 tatcaggcaagagct 468
||||||||||||||
Sbjct: 416 catcaggcaagagct 430
>gb|BE363727.1|BE363727 WS1_69_D08.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 591
Score = 410 bits (207), Expect = e-113
Identities = 333/375 (88%)
Strand = Plus / Plus
Query: 94 aatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaaga 153
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 56 aatgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaagga 115
Query: 154 ctacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgc 213
|| |||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct: 116 gtatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgc 175
Query: 214 ccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatcaagat 273
|||||| |||||| | ||||| || |||||||| ||||| || || || || ||||||||
Sbjct: 176 ccctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagat 235
Query: 274 tgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgt 333
|||||| ||||||||||| |||||| | || ||||| ||||| |||||||||||||||||
Sbjct: 236 tgacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatgt 295
Query: 334 gaagactaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagggc 393
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 296 gaaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagc 355
Query: 394 tgcactcagtgactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgc 453
| |||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 356 atcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgc 415
Query: 454 tatcaggcaagagct 468
||||||||||||||
Sbjct: 416 catcaggcaagagct 430
>gb|BG048507.1|BG048507 OV1_14_D09.g2_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 426
Score = 410 bits (207), Expect = e-113
Identities = 333/375 (88%)
Strand = Plus / Plus
Query: 94 aatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaaga 153
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 52 aatgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaagga 111
Query: 154 ctacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgc 213
|| |||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct: 112 gtatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgc 171
Query: 214 ccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatcaagat 273
|||||| |||||| | ||||| || |||||||| ||||| || || || || ||||||||
Sbjct: 172 ccctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagat 231
Query: 274 tgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgt 333
|||||| ||||||||||| |||||| | || ||||| ||||| |||||||||||||||||
Sbjct: 232 tgacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatgt 291
Query: 334 gaagactaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagggc 393
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 292 gaaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagc 351
Query: 394 tgcactcagtgactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgc 453
| |||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 352 atcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgc 411
Query: 454 tatcaggcaagagct 468
||||||||||||||
Sbjct: 412 catcaggcaagagct 426
>gb|BG048579.1|BG048579 OV1_14_D09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 402 bits (203), Expect = e-110
Identities = 332/375 (88%)
Strand = Plus / Plus
Query: 94 aatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaaga 153
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 52 aatgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaagga 111
Query: 154 ctacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgc 213
|| |||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct: 112 gtatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgc 171
Query: 214 ccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatcaagat 273
|||||| |||||| | ||||| || |||||||| ||||| || || || || ||||||||
Sbjct: 172 ccctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagat 231
Query: 274 tgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgt 333
|||||| ||||||||||| |||||| | || |||| ||||| |||||||||||||||||
Sbjct: 232 tgacattaaacgtgtcccaaagaagactacattgagtaaggcaatggaggaagctgatgt 291
Query: 334 gaagactaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagggc 393
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 292 gaaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagc 351
Query: 394 tgcactcagtgactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgc 453
| |||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 352 atcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgc 411
Query: 454 tatcaggcaagagct 468
||||||||||||||
Sbjct: 412 catcaggcaagagct 426
>gb|BI141301.1|BI141301 IP1_54_A05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 393
Score = 402 bits (203), Expect = e-110
Identities = 337/378 (89%), Gaps = 4/378 (1%)
Strand = Plus / Plus
Query: 288 tccccaagaagtcaaccttgatcaaggctatggaggaagctgatgtgaagactaagtggg 347
||||||||||| ||||| |||||||||| |||||||||||||| |||||||| |||||||
Sbjct: 1 tccccaagaagacaaccctgatcaaggcgatggaggaagctgacgtgaagaccaagtggg 60
Query: 348 agaacagctcatggggcaagaagctgattgtccagaagaggagggctgcactcagtgact 407
||||||| |||||||||||||||||||| || |||||||||||||| || |||| |||||
Sbjct: 61 agaacagttcatggggcaagaagctgatcgttcagaagaggagggcagcgctcaatgact 120
Query: 408 ttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgctatcaggcaagagc 467
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 ttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcaggcaagagc 180
Query: 468 tctccaagctgaagaaggcgtccactgcttaagtcccttttggtggatgacatgtta--g 525
|| |||||||||||||||| ||||| ||||| ||| | || ||||||| ||||||| |
Sbjct: 181 tcgccaagctgaagaaggcatccacggctta-gtctccttcagtggatggcatgttacag 239
Query: 526 tttttggtttcatgttggatcagcaatttgttttgagtgttgtcaaagccagaattagta 585
||||||||| |||| |||||||||| | | ||||||||||||||||||||||||||
Sbjct: 240 tttttggttctgagttgtatcagcaattcgatc-gagtgttgtcaaagccagaattagta 298
Query: 586 atatgtttcctgtgtaccagtttcaaacttcatcaagaatgggtgtgctctggatatttt 645
|||||||||||||| ||| |||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 299 atatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttctggatatttt 358
Query: 646 gtcgggaatgatatggaa 663
|||| ||||| |||||||
Sbjct: 359 gtcgtgaatgttatggaa 376
>gb|CF756620.1|CF756620 DSAF1_6_E06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_E06_A011 3', mRNA sequence
Length = 391
Score = 400 bits (202), Expect = e-110
Identities = 327/365 (89%), Gaps = 4/365 (1%)
Strand = Plus / Plus
Query: 254 tcacttaccgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaag 313
|||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 4 tcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaag 63
Query: 314 gctatggaggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagctg 373
|| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 64 gcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctg 123
Query: 374 attgtccagaagaggagggctgcactcagtgactttgacaggttcaaggtcatgctggca 433
|| || |||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 124 atcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggca 183
Query: 434 aggatcaagaggggtggtgctatcaggcaagagctctccaagctgaagaaggcgtccact 493
| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
Sbjct: 184 aagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggcatccccg 243
Query: 494 gcttaagtcccttttggtggatgacatgtt--agtttttggtttcatgttggatcagcaa 551
|||| ||| | || ||||||| |||||| |||||||||||| |||| ||||||||
Sbjct: 244 gctt-agtttccttcagtggatggcatgttacagtttttggttttgagttgtatcagcaa 302
Query: 552 tttgttttgagtgttgtcaaagccag-aattagtaatatgtttcctgtgtaccagtttca 610
|| | | |||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct: 303 ttcgatcggagtgttgtcaaagccagaaattagtaatatgtttcctgtgaacccatttca 362
Query: 611 aactt 615
|||||
Sbjct: 363 aactt 367
>gb|BI099634.1|BI099634 IP1_44_G02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 395
Score = 394 bits (199), Expect = e-108
Identities = 340/382 (89%), Gaps = 5/382 (1%)
Strand = Plus / Plus
Query: 285 gtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgat-gtgaagactaag 343
|||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct: 5 gtgtccccaagaagacaaccttgatcaaggcgatggaggaagctgatcgtgaagaccaag 64
Query: 344 tgggagaacagctcatggggcaagaagctgattgtccagaagaggagggctgcactcagt 403
||||||||||| ||||||||||||||| |||| || |||||||||||||| || |||| |
Sbjct: 65 tgggagaacagttcatggggcaagaagttgatcgttcagaagaggagggcagcgctcaat 124
Query: 404 gactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgctatcaggcaa 463
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 125 gactttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcaggcaa 184
Query: 464 gagctctccaagctgaagaaggcgtccactgcttaagtcccttttggtggatgacatgtt 523
|||||| |||||||||||||||| ||||| ||||| ||| | || ||||||| ||||||
Sbjct: 185 gagctcgccaagctgaagaaggcatccacggctta-gtctccttcagtggatggcatgtt 243
Query: 524 a--gtttttggtttcatgttggatcagcaatttgttttgagtgttgtcaaagccagaatt 581
| |||||||||| |||| |||||||||| | | ||||||||||||||||||||||
Sbjct: 244 acagtttttggttatgagttgtatcagcaattcgatc-gagtgttgtcaaagccagaatt 302
Query: 582 agtaatatgtttcctgtgtaccagtttcaaacttcatcaagaatgggtgtgctctggata 641
|||||||||||||||||| ||| |||||||||| ||||| ||||||||| || |||||
Sbjct: 303 agtaatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttcgggata 362
Query: 642 ttttgtcgggaatgatatggaa 663
|||||||| ||||| |||||||
Sbjct: 363 ttttgtcgtgaatgttatggaa 384
>gb|CD207838.1|CD207838 HS1_35_D06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_35_D06_A012 3', mRNA sequence
Length = 596
Score = 394 bits (199), Expect = e-108
Identities = 331/375 (88%)
Strand = Plus / Plus
Query: 94 aatgccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaaga 153
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 8 aatgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaagga 67
Query: 154 ctacggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgc 213
|| |||||||| |||||||| ||||| || ||||||||||||||||| |||||||| ||
Sbjct: 68 gtatggccgccttgtcgtcatggtcgacgtcgtcgaccagaacagggctcttgtggatgc 127
Query: 214 ccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatcaagat 273
|||||| |||||| | ||||| || |||||||| ||||| || || || || ||||||||
Sbjct: 128 ccctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagat 187
Query: 274 tgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgt 333
|||||| ||||||||||| |||||| | || ||||| ||||| |||||||||||||||||
Sbjct: 188 tgacattaaacgtgtcccaaagaagcctacattgattaaggcaatggaggaagctgatgt 247
Query: 334 gaagactaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagggc 393
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 248 gaaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagc 307
Query: 394 tgcactcagtgactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgc 453
| ||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 308 atcgttcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgc 367
Query: 454 tatcaggcaagagct 468
||||||||||||||
Sbjct: 368 catcaggcaagagct 382
>gb|BI141299.1|BI141299 IP1_54_A03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 329
Score = 315 bits (159), Expect = 3e-084
Identities = 275/310 (88%), Gaps = 4/310 (1%)
Strand = Plus / Plus
Query: 356 tcatggggcaagaagctgattgtccagaagaggagggctgcactcagtgactttgacagg 415
|||||||||||||||||||| || |||||||||||||| || |||| |||||||||||||
Sbjct: 2 tcatggggcaagaagctgatcgttcagaagaggagggcagcgctcaatgactttgacagg 61
Query: 416 ttcaaggtcatgctggcaaggatcaagaggggtggtgctatcaggcaagagctctccaag 475
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 62 ttcaaggtcatgctggcaaagatcaagaggggtggtgctatcaggcaagagctcgccaag 121
Query: 476 ctgaagaaggcgtccactgcttaagtcccttttggtggatgacatgtta--gtttttggt 533
||||||||||| ||||| ||||| ||| | || ||||||| ||||||| |||||||||
Sbjct: 122 ctgaagaaggcatccacggctta-gtctccttcagtggatggcatgttacagtttttggt 180
Query: 534 ttcatgttggatcagcaatttgttttgagtgttgtcaaagccagaattagtaatatgttt 593
| |||| |||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 181 tctgagttgtatcagcaattcgatc-gagtgttgtcaaagccagaattagtaatatgttt 239
Query: 594 cctgtgtaccagtttcaaacttcatcaagaatgggtgtgctctggatattttgtcgggaa 653
|||||| ||| |||||||||| ||||| ||||||||| |||||||||||||||| |||
Sbjct: 240 cctgtgaacccatttcaaactttgtcaagcatgggtgtgttctggatattttgtcgtgaa 299
Query: 654 tgatatggaa 663
|| |||||||
Sbjct: 300 tgttatggaa 309
>gb|AW924449.1|AW924449 WS1_69_D08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 472
Score = 258 bits (130), Expect = 7e-067
Identities = 238/274 (86%)
Strand = Plus / Plus
Query: 195 acagggcacttgtggacgcccctgatatggtcaggtgccagattaacttcaaacggctct 254
||||||| |||||||| |||||||| |||||| | ||||| || |||||||| ||||| |
Sbjct: 1 acagggctcttgtggatgcccctgacatggtccgttgccaaatgaacttcaagcggcttt 60
Query: 255 cacttaccgacatcaagattgacatcaaacgtgtccccaagaagtcaaccttgatcaagg 314
| || | || |||||||||||||| ||||||||||| |||||| | || ||||| ||||
Sbjct: 61 ccctgagtgatatcaagattgacattaaacgtgtcccaaagaagactacattgattaagg 120
Query: 315 ctatggaggaagctgatgtgaagactaagtgggagaacagctcatggggcaagaagctga 374
| |||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 121 caatggaggaagttgatgtgaaaaccaagtgggagaatagctcatggggcaagaagctga 180
Query: 375 ttgtccagaagaggagggctgcactcagtgactttgacaggttcaaggtcatgctggcaa 434
|||| ||||||||||| || | |||| ||||||||||||||||||| ||||| |||| |
Sbjct: 181 ttgtgcagaagaggagagcatcgctcaatgactttgacaggttcaagatcatgttggcga 240
Query: 435 ggatcaagaggggtggtgctatcaggcaagagct 468
|||||||||||||||||| ||||||||||||||
Sbjct: 241 agatcaagaggggtggtgccatcaggcaagagct 274
>gb|BE352900.1|BE352900 LG1_313_F01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 458
Score = 254 bits (128), Expect = 1e-065
Identities = 224/256 (87%)
Strand = Plus / Plus
Query: 213 cccctgatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatcaaga 272
||||||| |||||| | ||||| || |||||||| ||||| || || || || |||||||
Sbjct: 1 cccctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaaga 60
Query: 273 ttgacatcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatg 332
||||||| ||||||||||| |||||| | || ||||| ||||| ||||||||||||||||
Sbjct: 61 ttgacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatg 120
Query: 333 tgaagactaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggaggg 392
|||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 121 tgaaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagag 180
Query: 393 ctgcactcagtgactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtg 452
| | |||| ||||||||||||||||||| ||||| |||| | |||||||||||||||||
Sbjct: 181 catcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtg 240
Query: 453 ctatcaggcaagagct 468
| ||||||||||||||
Sbjct: 241 ccatcaggcaagagct 256
>gb|CW094282.1|CW094282 104_457_11000221_116_37473_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000221, DNA
sequence
Length = 690
Score = 182 bits (92), Expect = 3e-044
Identities = 101/104 (97%)
Strand = Plus / Minus
Query: 97 gccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaagacta 156
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 437 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacggcaaggacta 378
Query: 157 cggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 200
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 334
Score = 103 bits (52), Expect = 2e-020
Identities = 82/91 (90%), Gaps = 7/91 (7%)
Strand = Plus / Minus
Query: 9 gtttctgttcggacttccgccgcgcttcgccctctcgctccagccgcttcacag------ 62
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gtttctgtt-ggacttccgccgcgcttcgccctctcgctccagccgcttcacagcgtcgc 572
Query: 63 cgccgccgctcgcctctccgactgccgcgag 93
|||||| ||||||||||||||| ||||||||
Sbjct: 571 cgccgcagctcgcctctccgaccgccgcgag 541
>gb|BG239822.1|BG239822 OV1_29_D11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 195
Score = 167 bits (84), Expect = 2e-039
Identities = 167/191 (87%), Gaps = 4/191 (2%)
Strand = Plus / Plus
Query: 406 ctttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgctatcaggcaaga 465
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7 ctttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcaggcaaga 66
Query: 466 gctctccaagctgaagaaggcgtccactgcttaagtcccttttggtggatgacatgtt-- 523
|||| ||||| |||||||||| ||| | | || ||| |||| ||||||| ||||||
Sbjct: 67 gctcgccaagatgaagaaggcatccgc-ggtttagtttctttcagtggatggcatgttac 125
Query: 524 agtttttggtttcatgttggatcagcaatttgttttgagtgttgtcaaagccagaattag 583
||||||||||| |||| |||||||||| | | ||||||||||||||||||||||||
Sbjct: 126 agtttttggttgtgagttgtatcagcaattcg-atcgagtgttgtcaaagccagaattag 184
Query: 584 taatatgtttc 594
|||||||||||
Sbjct: 185 taatatgtttc 195
>gb|CW119547.1|CW119547 104_496_11108830_148_34635_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108830, DNA
sequence
Length = 643
Score = 155 bits (78), Expect = 7e-036
Identities = 174/206 (84%)
Strand = Plus / Plus
Query: 585 aatatgtttcctgtgtaccagtttcaaacttcatcaagaatgggtgtgctctggatattt 644
||||||||||||||| ||| |||||||||| ||||| ||||||||| |||||||||||
Sbjct: 1 aatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttctggatattt 60
Query: 645 tgtcgggaatgatatggaacacttaagttagcttgcgacaaatgtgcattgcttcccatt 704
||||| ||||| ||||||| | |||| |||| || ||||||||||| | ||| | |||
Sbjct: 61 tgtcgtgaatgttatggaatatctaaggtagcctgtgacaaatgtgcgatccttacaatt 120
Query: 705 tgagttttgtttattgccagtgtttttaggaaaccaggatattggcataaactattttgt 764
| |||||||||||||| |||||||||||| ||||||| ||||||||||| | || |||
Sbjct: 121 tctgttttgtttattgctagtgtttttaggcaaccagggtattggcataatcgatattgc 180
Query: 765 gatcctgcctgggctggcatttcttt 790
|||||||||| |||| |||||||||
Sbjct: 181 gatcctgcctaagctgtcatttcttt 206
>gb|CL196012.1|CL196012 104_421_10942777_116_32314_001 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942777, DNA
sequence
Length = 642
Score = 143 bits (72), Expect = 3e-032
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 97 gccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaagacta 156
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 113 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 54
Query: 157 cggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 200
|||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 53 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 10
>gb|CW140068.1|CW140068 104_530_11135584_116_34913_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135584, DNA
sequence
Length = 667
Score = 143 bits (72), Expect = 3e-032
Identities = 96/104 (92%)
Strand = Plus / Plus
Query: 97 gccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaagacta 156
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 206 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 265
Query: 157 cggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 200
|||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 266 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 309
>gb|CW328843.1|CW328843 104_825_11479523_116_35999_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479523, DNA
sequence
Length = 685
Score = 143 bits (72), Expect = 3e-032
Identities = 96/104 (92%)
Strand = Plus / Plus
Query: 97 gccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaagacta 156
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 523 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 582
Query: 157 cggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 200
|||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 583 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 626
>gb|CW328844.1|CW328844 104_825_11479523_148_36000_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479523, DNA
sequence
Length = 699
Score = 143 bits (72), Expect = 3e-032
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 97 gccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaagacta 156
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 433 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 374
Query: 157 cggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 200
|||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 373 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 330
>gb|CW501006.1|CW501006 fsbb001f296j14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296j14, DNA
sequence
Length = 671
Score = 143 bits (72), Expect = 3e-032
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 97 gccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaagacta 156
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 545 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 486
Query: 157 cggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 200
|||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 485 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 442
>gb|AI723767.1|AI723767 RHIZ1_11_F12.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 201
Score = 129 bits (65), Expect = 4e-028
Identities = 104/117 (88%)
Strand = Plus / Plus
Query: 560 gagtgttgtcaaagccagaattagtaatatgtttcctgtgtaccagtttcaaacttcatc 619
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct: 78 gagtgttgtcaaagccagaattagtaatatgtttcctgtgaacccatttcaaactttgtc 137
Query: 620 aagaatgggtgtgctctggatattttgtcgggaatgatatggaacacttaagttagc 676
||| |||||||| |||||||||||||||| ||||| ||||||| | |||||||||
Sbjct: 138 aagcatgggtgtattctggatattttgtcgtgaatgttatggaatatctaagttagc 194
>gb|CL196011.1|CL196011 104_421_10942777_114_32310_001 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942777, DNA
sequence
Length = 722
Score = 119 bits (60), Expect = 4e-025
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 97 gccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaagacta 156
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 633 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 692
Query: 157 cggccgcctcgtcgtcatcgtcga 180
|||||||| ||||||||||||||
Sbjct: 693 tggccgccttgtcgtcatcgtcga 716
>gb|CW119546.1|CW119546 104_496_11108830_116_34639_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108830, DNA
sequence
Length = 629
Score = 117 bits (59), Expect = 2e-024
Identities = 144/173 (83%)
Strand = Plus / Minus
Query: 618 tcaagaatgggtgtgctctggatattttgtcgggaatgatatggaacacttaagttagct 677
||||| ||||||||| |||||||||||||||| ||||| ||||||| | |||| ||||
Sbjct: 622 tcaagcatgggtgtgttctggatattttgtcgtgaatgttatggaatatctaaggtagcc 563
Query: 678 tgcgacaaatgtgcattgcttcccatttgagttttgtttattgccagtgtttttaggaaa 737
|| ||||||||||| | ||| | |||| |||||||||||||| |||||| ||||| ||
Sbjct: 562 tgtgacaaatgtgcgatccttacaatttctgttttgtttattgctagtgttnttaggcaa 503
Query: 738 ccaggatattggcataaactattttgtgatcctgcctgggctggcatttcttt 790
||||| ||||||||||| | || ||| |||||||| | |||| |||||||||
Sbjct: 502 ccagggtattggcataatcgatattgcgatcctgcntaagctgtcatttcttt 450
>gb|CW094283.1|CW094283 104_457_11000221_148_37474_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000221, DNA
sequence
Length = 715
Score = 111 bits (56), Expect = 1e-022
Identities = 82/91 (90%), Gaps = 6/91 (6%)
Strand = Plus / Plus
Query: 9 gtttctgttcggacttccgccgcgcttcgccctctcgctccagccgcttcacag------ 62
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtttctgtttggacttccgccgcgcttcgccctctcgctccagccgcttcacagcgtcgc 570
Query: 63 cgccgccgctcgcctctccgactgccgcgag 93
|||||| ||||||||||||||| ||||||||
Sbjct: 571 cgccgcagctcgcctctccgaccgccgcgag 601
>gb|CW501007.1|CW501007 fsbb001f296j14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296j14, DNA
sequence
Length = 706
Score = 111 bits (56), Expect = 1e-022
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 97 gccgttcaagaggttcgtggagatcgggcgcgtggcccttgtgaactacggcaaagacta 156
|||| |||||||| |||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 334 gccggtcaagagggtcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 393
Query: 157 cggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 200
|| ||||| |||||||||||||| | ||||||||||||||||
Sbjct: 394 tgggcgccttgtcgtcatcgtcgacggcgtcgaccagaacaggg 437
>gb|CW186014.1|CW186014 104_603_11166347_148_36698_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166347, DNA
sequence
Length = 699
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 464 gagctctccaagctgaagaaggc 486
|||||||||||||||||||||||
Sbjct: 445 gagctctccaagctgaagaaggc 467
>gb|CW408842.1|CW408842 fsbb001f102o12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102o12, DNA
sequence
Length = 679
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 166 cgtcgtcatcgtcgatgtggtcg 188
|||||||||||||||||||||||
Sbjct: 635 cgtcgtcatcgtcgatgtggtcg 613
>gb|CW419449.1|CW419449 fsbb001f124e24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f124e24, DNA
sequence
Length = 639
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 166 cgtcgtcatcgtcgatgtggtcg 188
|||||||||||||||||||||||
Sbjct: 583 cgtcgtcatcgtcgatgtggtcg 561
>gb|CW408841.1|CW408841 fsbb001f102o12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102o12, DNA
sequence
Length = 570
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 167 gtcgtcatcgtcgatgtggtcg 188
||||||||||||||||||||||
Sbjct: 545 gtcgtcatcgtcgatgtggtcg 566
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 220,440
Number of Sequences: 832831
Number of extensions: 220440
Number of successful extensions: 62458
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62370
Number of HSP's gapped (non-prelim): 77
length of query: 801
length of database: 491,359,669
effective HSP length: 20
effective length of query: 781
effective length of database: 474,703,049
effective search space: 370743081269
effective search space used: 370743081269
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)