BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.2
(764 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN134916.1|CN134916 OX1_29_H04.b1_A002 Oxidatively-stres... 749 0.0
gb|CF760165.1|CF760165 DSAF1_56_C09.b1_A011 Drought-stresse... 678 0.0
gb|CF758077.1|CF758077 DSAF1_27_A03.g1_A011 Drought-stresse... 414 e-114
gb|CF757766.1|CF757766 DSAF1_22_A08.g1_A011 Drought-stresse... 305 3e-081
gb|BZ350862.1|BZ350862 ht61f07.g1 WGS-SbicolorF (JM107 adap... 240 2e-061
gb|CW023465.1|CW023465 104_163_10432464_1_30001 Sorghum met... 167 2e-039
gb|CW065569.1|CW065569 104_312_10523223_115_30130 Sorghum m... 40 0.29
gb|CW160452.1|CW160452 104_567_11149892_148_36508_080 Sorgh... 40 0.29
gb|CW255633.1|CW255633 104_720_11226343_148_35134_026 Sorgh... 40 0.29
gb|CW258266.1|CW258266 104_724_11227784_148_35167_030 Sorgh... 40 0.29
gb|CW439870.1|CW439870 fsbb001f158d16k0 Sorghum methylation... 40 0.29
gb|CW461851.1|CW461851 fsbb001f209l10k0 Sorghum methylation... 40 0.29
>gb|CN134916.1|CN134916 OX1_29_H04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_29_H04_A002 3', mRNA sequence
Length = 737
Score = 749 bits (378), Expect = 0.0
Identities = 442/464 (95%)
Strand = Plus / Plus
Query: 105 ccagtcgtcatgaaaggttatgtcggtgacgacgaggctactgcagcaacagtggattca 164
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ccagttgtcatgaaaggttatgtgggtgacgacgaggctactgcagcaacagttgattca 60
Query: 165 gaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctacatt 224
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 61 gaaggctggttgaaaactggtgacctatgctacttcaatgaggatgggtttctctacatt 120
Query: 225 gttgatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaactg 284
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 121 gttgatcggttgaaagagttgataaaatacaagggatatcaggtacctccagccgaactg 180
Query: 285 gagcatatcctgaattctcatcctgatatcatggacgcagcagttattccttatccagac 344
| ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 181 gggcatatcctgaattctcatcctgatatcatggatgcagcagttattccgtacccagac 240
Query: 345 gaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaaccttacc 404
||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 241 gaagatgtcgggcaactaccaatggcttttatagtgaggaaaccaggctcaaaccttacc 300
Query: 405 gagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcga 464
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 301 aagcaacaagtcatggatttcgtggctaaacaggtcgcaccgtacaagaaagtccgtcga 360
Query: 465 gtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttgcggcgggagctt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttgcggcgggagctt 420
Query: 525 gtagagcangccgtgtccatgggtacctncaagctttgaagttt 568
|||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct: 421 gtagagcaggccgtgtccatggttacctccaagctttgaagttt 464
>gb|CF760165.1|CF760165 DSAF1_56_C09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_56_C09_A011 5', mRNA sequence
Length = 564
Score = 678 bits (342), Expect = 0.0
Identities = 397/416 (95%)
Strand = Plus / Plus
Query: 153 acagtggattcagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatggg 212
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1 acagttgattcagaaggctggttgaaaactggtgacctatgctacttcaatgaggatggg 60
Query: 213 ttactctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggtacct 272
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 tttctctacattgttgatcggttgaaagagttgataaaatacaagggatatcaggtacct 120
Query: 273 cctgccgaactggagcatatcctgaattctcatcctgatatcatggacgcagcagttatt 332
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 ccagccgaactggagcatatcctgaattctcatcctgatatcatggatgcagcagttatt 180
Query: 333 ccttatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccaggg 392
|| || ||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 ccgtacccagacgaagatgtcgggcaactaccaatggcttttatagtgaggaaaccaggc 240
Query: 393 tcaaaccttaccgagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaag 452
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 tcaaaccttaccaagcaacaagtcatggatttcgtggctaaacaggtcgcaccgtacaag 300
Query: 453 aaagttcgtcgagtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttg 512
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaagtccgtcgagtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttg 360
Query: 513 cggcgggagcttgtagagcangccgtgtccatgggtacctncaagctttgaagttt 568
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct: 361 cggcgggagcttgtagagcaggccgtgtccatggttacctccaagctttgaagttt 416
>gb|CF758077.1|CF758077 DSAF1_27_A03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_27_A03_A011 3', mRNA sequence
Length = 532
Score = 414 bits (209), Expect = e-114
Identities = 246/259 (94%)
Strand = Plus / Plus
Query: 310 atatcatggacgcagcagttattccttatccagacgaagacgccgggcaactcccaatgg 369
|||||||||| |||||||||||||| || ||||||||||| | ||||||||| |||||||
Sbjct: 1 atatcatggatgcagcagttattccgtacccagacgaagatgtcgggcaactaccaatgg 60
Query: 370 cttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatggatttcgtgg 429
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 61 cttttatagtgaggaaaccaggctcaaaccttaccaagcaacaagtcatggatttcgtgg 120
Query: 430 ctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattccca 489
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 121 ctaaacaggtcgcaccgtacaagaaagtccgtcgagtggcctttgtttctgcaattccca 180
Query: 490 aatcgcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggta 549
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 181 aatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatggtta 240
Query: 550 cctncaagctttgaagttt 568
||| |||||||||||||||
Sbjct: 241 cctccaagctttgaagttt 259
>gb|CF757766.1|CF757766 DSAF1_22_A08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_22_A08_A011 3', mRNA sequence
Length = 461
Score = 305 bits (154), Expect = 3e-081
Identities = 180/188 (95%), Gaps = 1/188 (0%)
Strand = Plus / Plus
Query: 381 aggaaaccagggtcaaaccttaccgagcaacaagtcatggatttcgtggctaaacaggtc 440
||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaaaccaggctcaaacct-accaagcaacaagtcatggatttcgtggctaaacaggtc 59
Query: 441 gcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcgcctgct 500
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gcaccgtacaagaaagtccgtcgagtggcctttgtttctgcaattcccaaatcgcctgct 119
Query: 501 gggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctncaagctt 560
|||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct: 120 gggaagatcttgcggcgggagcttgtagagcaggccgtgtccatggttacctccaagctt 179
Query: 561 tgaagttt 568
||||||||
Sbjct: 180 tgaagttt 187
>gb|BZ350862.1|BZ350862 ht61f07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht61f07 5', DNA sequence
Length = 714
Score = 240 bits (121), Expect = 2e-061
Identities = 139/145 (95%)
Strand = Plus / Plus
Query: 124 atgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaaaaccg 183
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 1 atgtgggtgacgacgaggctactgcagcaacagttgattcagaaggctggttgaaaactg 60
Query: 184 gtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaaagagt 243
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 gtgacctatgctacttcaatgaggatgggtttctctacattgttgatcggttgaaagagt 120
Query: 244 tgataaagtacaagggatatcaggt 268
||||||| |||||||||||||||||
Sbjct: 121 tgataaaatacaagggatatcaggt 145
Score = 161 bits (81), Expect = 1e-037
Identities = 96/101 (95%)
Strand = Plus / Plus
Query: 339 ccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaac 398
||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 430 ccagacgaagatgtcgggcaactaccaatggcttttatagtgaggaaaccaggctcaaac 489
Query: 399 cttaccgagcaacaagtcatggatttcgtggctaaacaggt 439
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 490 cttaccaagcaacaagtcatggatttcgtggctaaacaggt 530
Score = 125 bits (63), Expect = 6e-027
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 264 caggtacctcctgccgaactggagcatatcctgaattctcatcctgatatcatggacgca 323
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 244 caggtacctccagccgaactggagcatatcctgaattctcatcctgatatcatggatgca 303
Query: 324 gcagttattcc 334
|||||||||||
Sbjct: 304 gcagttattcc 314
>gb|CW023465.1|CW023465 104_163_10432464_1_30001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432464, DNA
sequence
Length = 530
Score = 167 bits (84), Expect = 2e-039
Identities = 96/100 (96%)
Strand = Plus / Minus
Query: 1 gttcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 103 gttcggtcgggaagctggcatcgcacttggaggcgaagatcgtcgatccctccaccggcg 44
Query: 61 aggtgcttgggccagggcagcgcggcgagctctgggtccg 100
||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 43 aggcgctggggcctgggcagcgcggcgagctctgggtccg 4
>gb|CW065569.1|CW065569 104_312_10523223_115_30130 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523223, DNA
sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.29
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggt 122
||||||||||||| |||| || ||| |||||||||||||
Sbjct: 60 cggcgagctctggatccgggggccatacgtcatgaaaggt 99
>gb|CW160452.1|CW160452 104_567_11149892_148_36508_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149892, DNA
sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.29
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggt 122
||||||||||||| |||| || ||| |||||||||||||
Sbjct: 347 cggcgagctctggatccgggggccatacgtcatgaaaggt 308
>gb|CW255633.1|CW255633 104_720_11226343_148_35134_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226343, DNA
sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.29
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggt 122
||||||||||||| |||| || ||| |||||||||||||
Sbjct: 242 cggcgagctctggatccgggggccatacgtcatgaaaggt 203
>gb|CW258266.1|CW258266 104_724_11227784_148_35167_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227784, DNA
sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.29
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggt 122
||||||||||||| |||| || ||| |||||||||||||
Sbjct: 51 cggcgagctctggatccgggggccatacgtcatgaaaggt 12
>gb|CW439870.1|CW439870 fsbb001f158d16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f158d16, DNA
sequence
Length = 520
Score = 40.1 bits (20), Expect = 0.29
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggt 122
||||||||||||| |||| || ||| |||||||||||||
Sbjct: 462 cggcgagctctggatccgggggccatacgtcatgaaaggt 501
>gb|CW461851.1|CW461851 fsbb001f209l10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f209l10, DNA
sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.29
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggt 122
||||||||||||| |||| || ||| |||||||||||||
Sbjct: 182 cggcgagctctggatccgggggccatacgtcatgaaaggt 143
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,589
Number of Sequences: 832831
Number of extensions: 172589
Number of successful extensions: 47129
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47102
Number of HSP's gapped (non-prelim): 26
length of query: 764
length of database: 491,359,669
effective HSP length: 20
effective length of query: 744
effective length of database: 474,703,049
effective search space: 353179068456
effective search space used: 353179068456
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)