BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635788.2.1
(753 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU835239.1|BU835239 T071D10 Populus apical shoot cDNA li... 40 0.12
gb|DN499602.1|DN499602 T071D10.5pR Populus shoot meristem c... 40 0.12
gb|DT488400.1|DT488400 WS02536.B21_F07 PT-MB-N-A-15 Populus... 40 0.12
gb|AJ776654.1|AJ776654 AJ776654 Populus euphratica root 3-6... 38 0.47
gb|CX176829.1|CX176829 H09_69-69_15.ab1 leaf inoculated wit... 38 0.47
gb|BP925365.1|BP925365 BP925365 full-length enriched poplar... 38 0.47
>gb|BU835239.1|BU835239 T071D10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 668 agagcaagaagaagaagaag 687
||||||||||||||||||||
Sbjct: 460 agagcaagaagaagaagaag 479
>gb|DN499602.1|DN499602 T071D10.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T071D10 5', mRNA sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 668 agagcaagaagaagaagaag 687
||||||||||||||||||||
Sbjct: 460 agagcaagaagaagaagaag 479
>gb|DT488400.1|DT488400 WS02536.B21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02536_F07 3', mRNA sequence
Length = 394
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 668 agagcaagaagaagaagaag 687
||||||||||||||||||||
Sbjct: 322 agagcaagaagaagaagaag 341
>gb|AJ776654.1|AJ776654 AJ776654 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400016F01F1, mRNA sequence
Length = 447
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaag 687
|||||||||||||||||||
Sbjct: 373 gagcaagaagaagaagaag 355
>gb|CX176829.1|CX176829 H09_69-69_15.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 602
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 670 agcaagaagaagaagaagg 688
|||||||||||||||||||
Sbjct: 155 agcaagaagaagaagaagg 173
>gb|BP925365.1|BP925365 BP925365 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-045_A14.f 5', mRNA sequence
Length = 412
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 671 gcaagaagaagaagaaggc 689
|||||||||||||||||||
Sbjct: 325 gcaagaagaagaagaaggc 307
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,294
Number of Sequences: 369679
Number of extensions: 80294
Number of successful extensions: 34064
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34035
Number of HSP's gapped (non-prelim): 17
length of query: 753
length of database: 203,408,664
effective HSP length: 19
effective length of query: 734
effective length of database: 196,384,763
effective search space: 144146416042
effective search space used: 144146416042
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)