BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871923.2.1
(1030 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN503442.1|DN503442 Y016A06.5pR Populus infected leaf su... 105 3e-021
gb|DT476199.1|DT476199 WS01228.B21_K23 PT-GT-FL-A-3 Populus... 98 8e-019
gb|DT526747.1|DT526747 WS02048.C21_N18 PTxN-IB-N-A-11 Popul... 96 3e-018
gb|CA923792.1|CA923792 MTU7CL.P15.A06 Aspen leaf cDNA Libra... 92 5e-017
gb|CK089734.1|CK089734 C030P12.3pR Populus strain T89 leave... 68 7e-010
gb|DN493450.1|DN493450 Y016A06.3pR Populus infected leaf su... 68 7e-010
gb|CV238436.1|CV238436 WS0126.B21_K06 PT-GT-FL-A-3 Populus ... 60 2e-007
gb|CK115842.1|CK115842 Y016A06 Populus infected leaf substr... 56 3e-006
gb|CX171013.1|CX171013 E12_69-102_10.ab1 leaf inoculated wi... 50 2e-004
gb|CX176614.1|CX176614 C10_69-38_06.ab1 leaf inoculated wit... 50 2e-004
gb|CV242314.1|CV242314 WS02514.B21.1_L16 PT-MB-N-A-15 Popul... 44 0.010
>gb|DN503442.1|DN503442 Y016A06.5pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y016A06 5', mRNA sequence
Length = 832
Score = 105 bits (53), Expect = 3e-021
Identities = 125/149 (83%)
Strand = Plus / Plus
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagggaatattcatgctggtctct 523
|||||||||||||| |||||||| ||||| || |||||||||||||||||||| || |||
Sbjct: 292 aatttcctcatgggcatcatcattggggctggaattcagggaatattcatgctagtgtct 351
Query: 524 ggctacttcagacttccatacgacatcccgaagcccttttggagataccccatgcagtac 583
|| ||||| || || ||| | ||||| || ||||| | ||||||||||| ||| ||||
Sbjct: 352 gggtactttaggctcccaaatgacataccaaagcctgtgtggagatacccaatgtcgtac 411
Query: 584 atcagcttccactactgggcactgcaggg 612
|| |||||||||| |||||| || |||||
Sbjct: 412 attagcttccacttctgggctctacaggg 440
Score = 67.9 bits (34), Expect = 7e-010
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 746 gtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatca 803
||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct: 573 gtcattttcagtatgattgtcatctaccgcatcatcttctttttcatgatcaagatca 630
Score = 56.0 bits (28), Expect = 3e-006
Identities = 112/140 (80%)
Strand = Plus / Plus
Query: 176 ttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttc 235
||||| ||||||||||| ||||| || || ||||| || || || |||||||||||||||
Sbjct: 4 ttcgtcacgttcatgtcaattggtgggtttccttcctttgtagaggaaatgaaggtcttc 63
Query: 236 cagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatc 295
|| | ||| |||| || |||||||| || || | || || || || |||||||||||
Sbjct: 64 caaagagaaaggctaaatgggcactatggcgtggtcgcattcgtgattagcaacaccatt 123
Query: 296 tcagccacgccgttcctgat 315
|| || | ||||||||||||
Sbjct: 124 tctgcaatgccgttcctgat 143
>gb|DT476199.1|DT476199 WS01228.B21_K23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_K23 3', mRNA sequence
Length = 941
Score = 97.6 bits (49), Expect = 8e-019
Identities = 124/149 (83%)
Strand = Plus / Minus
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagggaatattcatgctggtctct 523
|||||||||||||| || ||||| ||||| || |||||||||||||||||||| || |||
Sbjct: 751 aatttcctcatgggcattatcattggggctggaattcagggaatattcatgctagtatct 692
Query: 524 ggctacttcagacttccatacgacatcccgaagcccttttggagataccccatgcagtac 583
|| ||||| || || ||| | ||||| || ||||| | ||||||||||| ||| ||||
Sbjct: 691 gggtactttaggctcccaaatgacataccaaagcctgtgtggagatacccaatgtcgtac 632
Query: 584 atcagcttccactactgggcactgcaggg 612
|| |||||||||| |||||| || |||||
Sbjct: 631 attagcttccacttctgggctctacaggg 603
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 746 gtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatca 803
||||| ||||| ||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct: 469 gtcatattcagtatgattgtcatctaccgcatcatcttctttatcatgatcaagatca 412
>gb|DT526747.1|DT526747 WS02048.C21_N18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_N18 3', mRNA sequence
Length = 894
Score = 95.6 bits (48), Expect = 3e-018
Identities = 117/140 (83%)
Strand = Plus / Minus
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagggaatattcatgctggtctct 523
|||||||||||||| || ||||| ||||| || |||||||||||||||||||| || |||
Sbjct: 867 aatttcctcatgggcattatcattggggctggaattcagggaatattcatgctagtatct 808
Query: 524 ggctacttcagacttccatacgacatcccgaagcccttttggagataccccatgcagtac 583
|| ||||| || || ||| | ||||| || ||||| | ||||||||||| ||| ||||
Sbjct: 807 gggtactttaggctcccaaatgacataccaaagcctgtatggagatacccaatgtcgtac 748
Query: 584 atcagcttccactactgggc 603
|| |||||||||| ||||||
Sbjct: 747 attagcttccacttctgggc 728
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 746 gtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatca 803
||||| ||||| ||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct: 470 gtcatattcagtatgattgtcatctaccgcatcatcttctttatcatgatcaagatca 413
>gb|CA923792.1|CA923792 MTU7CL.P15.A06 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 704
Score = 91.7 bits (46), Expect = 5e-017
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagggaatattcatgctggtctct 523
|||||||||||||| |||||||| ||||| || |||||||||||||||||||| || |||
Sbjct: 116 aatttcctcatgggcatcatcattggggctggaattcagggaatattcatgctagtgtct 57
Query: 524 ggctacttcagacttccatacgacatcccgaagcccttttggagataccc 573
|||||||| || || ||| | ||||| || ||||| | |||||||||||
Sbjct: 56 ggctactttaggctcccaaatgacataccaaagcctgtgtggagataccc 7
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 167 gtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaaatg 226
|||||||| ||||| ||||||||||| ||||| || || ||||| || || || ||||||
Sbjct: 413 gtctttggtttcgtcacgttcatgtcaattggtgggtttccttcctttgtagaggaaatg 354
Query: 227 aaggtcttccagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagc 286
||||||||||| | ||| |||| || |||||||| ||||| || || || || || |||
Sbjct: 353 aaggtcttccaaagagaaaggctaaatgggcactatggtgtggccgcattcgtgattagc 294
Query: 287 aacaccatctcagccacgccgttcctgat 315
|||||||| || || | ||||||||||||
Sbjct: 293 aacaccatttctgcaatgccgttcctgat 265
>gb|CK089734.1|CK089734 C030P12.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C030P12 3', mRNA sequence
Length = 709
Score = 67.9 bits (34), Expect = 7e-010
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 746 gtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatca 803
||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct: 471 gtcattttcagtatgattgtcatctaccgcatcatcttctttttcatgatcaagatca 414
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 508 attcatgctggtctctggctacttcagacttccatacgacatcccgaagcccttttggag 567
||||||||| || ||||||||||| || || ||| | ||||| || ||||| | |||||
Sbjct: 709 attcatgctagtgtctggctactttaggctcccaaatgacataccaaagcctgtgtggag 650
Query: 568 ataccccatgcagtacatcagcttccactactgggcactgcaggg 612
|||||| ||| |||||| |||||||||| |||||| || |||||
Sbjct: 649 atacccaatgtcgtacattagcttccacttctgggctctacaggg 605
>gb|DN493450.1|DN493450 Y016A06.3pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y016A06 3', mRNA sequence
Length = 653
Score = 67.9 bits (34), Expect = 7e-010
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 746 gtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatca 803
||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct: 463 gtcattttcagtatgattgtcatctaccgcatcatcttctttttcatgatcaagatca 406
>gb|CV238436.1|CV238436 WS0126.B21_K06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_K06 3', mRNA sequence
Length = 661
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 746 gtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatca 803
||||| ||||| ||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct: 468 gtcatattcagtatgattgtcatctaccgcatcatcttctttatcatgatcaagatca 411
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 563 tggagataccccatgcagtacatcagcttccactactgggcactgcaggg 612
||||||||||| ||| |||||| |||||||||| |||||| || |||||
Sbjct: 651 tggagatacccaatgtcgtacattagcttccacttctgggctctacaggg 602
>gb|CK115842.1|CK115842 Y016A06 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y016A06 5', mRNA sequence
Length = 162
Score = 56.0 bits (28), Expect = 3e-006
Identities = 112/140 (80%)
Strand = Plus / Plus
Query: 176 ttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttc 235
||||| ||||||||||| ||||| || || ||||| || || || |||||||||||||||
Sbjct: 9 ttcgtcacgttcatgtcaattggtgggtttccttcctttgtagaggaaatgaaggtcttc 68
Query: 236 cagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatc 295
|| | ||| |||| || |||||||| || || | || || || || |||||||||||
Sbjct: 69 caaagagaaaggctaaatgggcactatggcgtggtcgcattcgtgattagcaacaccatt 128
Query: 296 tcagccacgccgttcctgat 315
|| || | ||||||||||||
Sbjct: 129 tctgcaatgccgttcctgat 148
>gb|CX171013.1|CX171013 E12_69-102_10.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 668
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 167 gtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaaatg 226
|||||||| ||||| ||||||||||| ||||| || || ||||| || || || ||||||
Sbjct: 361 gtctttggtttcgtcacgttcatgtcaattggtgggtttccttcctttgtagaggaaatg 420
Query: 227 aaggt 231
|||||
Sbjct: 421 aaggt 425
Score = 40.1 bits (20), Expect = 0.16
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 228 aggtcttccagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagca 287
|||||||||| | ||| |||| || |||||||| ||||| | || ||||| || ||||
Sbjct: 541 aggtcttccaaagagaaaggctaaatgggcactatggtgtggtcgcatttgtgattagca 600
Query: 288 acaccatctcagccacgccgttcc 311
||||||| || |||| ||||||||
Sbjct: 601 acaccatttctgccatgccgttcc 624
>gb|CX176614.1|CX176614 C10_69-38_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 666
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 167 gtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaaatg 226
|||||||| ||||| ||||||||||| ||||| || || ||||| || || || ||||||
Sbjct: 361 gtctttggtttcgtcacgttcatgtcaattggtgggtttccttcctttgtagaggaaatg 420
Query: 227 aaggt 231
|||||
Sbjct: 421 aaggt 425
Score = 40.1 bits (20), Expect = 0.16
Identities = 71/88 (80%)
Strand = Plus / Plus
Query: 228 aggtcttccagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagca 287
|||||||||| | ||| |||| || |||||||| ||||| | || ||||| || ||||
Sbjct: 541 aggtcttccaaagagaaaggctaaatgggcactatggtgtggtcgcatttgtgattagca 600
Query: 288 acaccatctcagccacgccgttcctgat 315
||||||| || || | ||||||||||||
Sbjct: 601 acaccatttctgcaatgccgttcctgat 628
>gb|CV242314.1|CV242314 WS02514.B21.1_L16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_L16 3', mRNA sequence
Length = 908
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 182 acgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
||||||||| | || |||||||||||||| || || ||||| ||||||||
Sbjct: 642 acgttcatgacaatcggaggattcccttcttttgtggaagatatgaaggt 593
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,074
Number of Sequences: 369679
Number of extensions: 102074
Number of successful extensions: 27442
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27413
Number of HSP's gapped (non-prelim): 27
length of query: 1030
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1011
effective length of database: 196,384,763
effective search space: 198544995393
effective search space used: 198544995393
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)