BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3024030.2.1
(412 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF236517.1|CF236517 PtaJXT3G1G0113 Poplar cDNA library f... 48 3e-004
gb|CN522105.1|CN522105 GQ0124.B3_N11 GQ012 Populus trichoca... 46 0.001
gb|CV272944.1|CV272944 WS0171.B21_D04 PTxD-NR-A-8 Populus t... 46 0.001
gb|CX182101.1|CX182101 F03_45-4_11.ab1 leaf inoculated with... 46 0.001
gb|DV463945.1|DV463945 MTUNUL1.P21.D01 NUL Populus fremonti... 46 0.001
gb|BU872800.1|BU872800 Q047A04 Populus flower cDNA library ... 42 0.016
gb|CF232476.1|CF232476 PtaJXO0011A10A1002 Poplar cDNA libra... 42 0.016
gb|CK096273.1|CK096273 UA54DPC10.3pR Populus dormant cambiu... 42 0.016
gb|DN497270.1|DN497270 Q047A04.5pR Populus dormant bud cDNA... 42 0.016
gb|BU823017.1|BU823017 UB46DPH02 Populus tremula cambium cD... 40 0.064
gb|CA926366.1|CA926366 MTU6CR.P14.B12 Aspen root cDNA Libra... 40 0.064
gb|CF231502.1|CF231502 PtaC0022B8B0804 Poplar cDNA library ... 40 0.064
gb|CK103895.1|CK103895 I003P48.5pR Populus senescing leaves... 40 0.064
gb|CK103993.1|CK103993 I009P24.5pR Populus senescing leaves... 40 0.064
gb|CV248127.1|CV248127 WS0112.B21_I07 PT-P-FL-A-2 Populus t... 40 0.064
gb|CV261155.1|CV261155 WS02016.B21_A06 PTxN-IB-N-A-11 Popul... 40 0.064
gb|CV265665.1|CV265665 WS02027.B21_O10 PTxN-IB-N-A-11 Popul... 40 0.064
gb|CV273164.1|CV273164 WS0171.B21_N24 PTxD-NR-A-8 Populus t... 40 0.064
gb|CV275828.1|CV275828 WS0177.B21_M05 PTxD-NR-A-8 Populus t... 40 0.064
gb|CV275947.1|CV275947 WS0178.B21.1_C11 PTxD-NR-A-8 Populus... 40 0.064
gb|CV280389.1|CV280389 WS0136.B21_B12 PTxD-IL-FL-A-4 Populu... 40 0.064
gb|CX184480.1|CX184480 F06_45-113_12.ab1 leaf inoculated wi... 40 0.064
gb|CX184497.1|CX184497 G08_45-78_14.ab1 leaf inoculated wit... 40 0.064
gb|CX184882.1|CX184882 G09_45-3_13.ab1 leaf inoculated with... 40 0.064
gb|DT495142.1|DT495142 WS0112.BR_I07 PT-P-FL-A-2 Populus tr... 40 0.064
gb|DT503282.1|DT503282 WS0136.BR_B12 PTxD-IL-FL-A-4 Populus... 40 0.064
gb|DT516235.1|DT516235 WS02430.B21_M16 PTxD-ICC-N-A-14 Popu... 40 0.064
gb|DV466440.1|DV466440 MTUNUL1.P50.F08 NUL Populus fremonti... 40 0.064
gb|BI122186.1|BI122186 I003P48P Populus leaf cDNA library P... 38 0.25
gb|BU886589.1|BU886589 R047G10 Populus root cDNA library Po... 38 0.25
gb|BU897806.1|BU897806 X070A06 Populus wood cDNA library Po... 38 0.25
gb|CK093893.1|CK093893 I003P48.3pR Populus senescing leaves... 38 0.25
gb|CK094006.1|CK094006 I009P24.3pR Populus senescing leaves... 38 0.25
gb|CK115865.1|CK115865 Y016D03 Populus infected leaf substr... 38 0.25
gb|CV235494.1|CV235494 WS0122.B21_F19 PT-GT-FL-A-3 Populus ... 38 0.25
gb|CV260115.1|CV260115 WS02013.B21_D03 PTxN-IB-N-A-11 Popul... 38 0.25
gb|CV261710.1|CV261710 WS02017.B21_I15 PTxN-IB-N-A-11 Popul... 38 0.25
gb|CV262531.1|CV262531 WS02019.B21_N05 PTxN-IB-N-A-11 Popul... 38 0.25
gb|CV268545.1|CV268545 WS0205.B21_M13 PTxN-IB-N-A-11 Populu... 38 0.25
gb|CV277048.1|CV277048 WS0142.B21_I04 PTxD-IL-A-5 Populus t... 38 0.25
gb|CX169985.1|CX169985 C06_69-77_06.ab1 leaf inoculated wit... 38 0.25
gb|CX173802.1|CX173802 C09_69-100_05.ab1 leaf inoculated wi... 38 0.25
gb|CX175366.1|CX175366 D12_69-111_08.ab1 leaf inoculated wi... 38 0.25
gb|CX187470.1|CX187470 E01_45-110_09.ab1 leaf inoculated wi... 38 0.25
gb|BP922517.1|BP922517 BP922517 full-length enriched poplar... 38 0.25
gb|BP923254.1|BP923254 BP923254 full-length enriched poplar... 38 0.25
gb|BP925104.1|BP925104 BP925104 full-length enriched poplar... 38 0.25
gb|DN486200.1|DN486200 P005F04.3pR Populus petioles cDNA li... 38 0.25
gb|DT487891.1|DT487891 WS02534.B21_P05 PT-MB-N-A-15 Populus... 38 0.25
gb|DT491231.1|DT491231 WS02547.C21_C15 PT-MB-N-A-15 Populus... 38 0.25
gb|DT502741.1|DT502741 WS0134.BR_B09 PTxD-IL-FL-A-4 Populus... 38 0.25
>gb|CF236517.1|CF236517 PtaJXT3G1G0113 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 506
Score = 48.1 bits (24), Expect = 3e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 264 caaaccaaaccaaaccaaaccaaa 241
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 267 aaccaaaccaaaccaaaccaaa 246
Score = 40.1 bits (20), Expect = 0.064
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 259 caaaccaaaccaaaccaaac 240
>gb|CN522105.1|CN522105 GQ0124.B3_N11 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0124_N11 5', mRNA sequence
Length = 540
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 14 acaaaccaaaccaaaccaaacca 36
|||||||||||||||||||||||
Sbjct: 487 acaaaccaaaccaaaccaaacca 465
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 486 caaaccaaaccaaaccaaa 468
>gb|CV272944.1|CV272944 WS0171.B21_D04 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_D04 3', mRNA sequence
Length = 576
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaacca 36
|||||||||||||||||||||||
Sbjct: 97 acaaaccaaaccaaaccaaacca 119
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 98 caaaccaaaccaaaccaaa 116
>gb|CX182101.1|CX182101 F03_45-4_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 14 acaaaccaaaccaaaccaaacca 36
|||||||||||||||||||||||
Sbjct: 502 acaaaccaaaccaaaccaaacca 480
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 501 caaaccaaaccaaaccaaa 483
>gb|DV463945.1|DV463945 MTUNUL1.P21.D01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 467
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 204 aaaccaaaccaaaccaaaccaaa 182
Score = 40.1 bits (20), Expect = 0.064
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 200 caaaccaaaccaaaccaaac 181
>gb|BU872800.1|BU872800 Q047A04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 159
Score = 42.1 bits (21), Expect = 0.016
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 62 accaaaccaaaccaaaccaaa 42
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 60 caaaccaaaccaaaccaaa 42
>gb|CF232476.1|CF232476 PtaJXO0011A10A1002 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.016
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaagaa 41
|||||||||||||| ||||||||||
Sbjct: 82 aaccaaaccaaaccgaaccaaagaa 58
>gb|CK096273.1|CK096273 UA54DPC10.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA54DPC10 3', mRNA sequence
Length = 838
Score = 42.1 bits (21), Expect = 0.016
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 323 ccaacagcaaacgatgtgcccacgtactcgttctcca 359
|||||||||||||| || ||| ||||||||||||||
Sbjct: 290 ccaacagcaaacgaagtttccaggtactcgttctcca 326
>gb|DN497270.1|DN497270 Q047A04.5pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q047A04 5', mRNA sequence
Length = 350
Score = 42.1 bits (21), Expect = 0.016
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 260 accaaaccaaaccaaaccaaa 240
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 258 caaaccaaaccaaaccaaa 240
>gb|BU823017.1|BU823017 UB46DPH02 Populus tremula cambium cDNA library Populus tremula
cDNA 5 prime, mRNA sequence
Length = 443
Score = 40.1 bits (20), Expect = 0.064
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaacc 35
||||||||||||||||||||
Sbjct: 16 aaaccaaaccaaaccaaacc 35
>gb|CA926366.1|CA926366 MTU6CR.P14.B12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 462
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||||||| |||||||||||||||
Sbjct: 154 caaaccaatccaaaccaaaccaaa 177
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 193 aaaccaaaccaatccaaaccaaa 215
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 150 aaaccaaaccaatccaaaccaaa 172
>gb|CF231502.1|CF231502 PtaC0022B8B0804 Poplar cDNA library from cambial zone Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.064
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaacc 35
||||||||||||||||||||
Sbjct: 73 aaaccaaaccaaaccaaacc 92
>gb|CK103895.1|CK103895 I003P48.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I003P48 5', mRNA sequence
Length = 198
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 87 caaaccaaaccaatccaaaccaaa 64
>gb|CK103993.1|CK103993 I009P24.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I009P24 5', mRNA sequence
Length = 196
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 84 caaaccaaaccaatccaaaccaaa 61
>gb|CV248127.1|CV248127 WS0112.B21_I07 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0112_I07 3', mRNA sequence
Length = 263
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 154 caaaccaaaccaatccaaaccaaa 177
>gb|CV261155.1|CV261155 WS02016.B21_A06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_A06 3', mRNA sequence
Length = 851
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 154 caaaccaaaccaatccaaaccaaa 177
>gb|CV265665.1|CV265665 WS02027.B21_O10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02027_O10 3', mRNA sequence
Length = 831
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 155 caaaccaaaccaatccaaaccaaa 178
>gb|CV273164.1|CV273164 WS0171.B21_N24 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_N24 3', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 152 caaaccaaaccaatccaaaccaaa 175
>gb|CV275828.1|CV275828 WS0177.B21_M05 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_M05 3', mRNA sequence
Length = 863
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 151 caaaccaaaccaatccaaaccaaa 174
>gb|CV275947.1|CV275947 WS0178.B21.1_C11 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0178_C11 3', mRNA sequence
Length = 822
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 152 caaaccaaaccaatccaaaccaaa 175
>gb|CV280389.1|CV280389 WS0136.B21_B12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_B12 3', mRNA sequence
Length = 891
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 149 caaaccaaaccaatccaaaccaaa 172
>gb|CX184480.1|CX184480 F06_45-113_12.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 763
Score = 40.1 bits (20), Expect = 0.064
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 34 ccaaaccaaaccaaaccaaa 53
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 35 caaaccaaaccaaaccaaa 53
>gb|CX184497.1|CX184497 G08_45-78_14.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.064
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 23 ccaaaccaaaccaaaccaaa 42
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 24 caaaccaaaccaaaccaaa 42
>gb|CX184882.1|CX184882 G09_45-3_13.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.064
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 15 ccaaaccaaaccaaaccaaa 34
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 16 caaaccaaaccaaaccaaa 34
>gb|DT495142.1|DT495142 WS0112.BR_I07 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0112_I07 5', mRNA sequence
Length = 230
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 77 caaaccaaaccaatccaaaccaaa 54
>gb|DT503282.1|DT503282 WS0136.BR_B12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_B12 5', mRNA sequence
Length = 820
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 782 caaaccaaaccaatccaaaccaaa 759
>gb|DT516235.1|DT516235 WS02430.B21_M16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_M16 3', mRNA sequence
Length = 857
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 145 caaaccaaaccaatccaaaccaaa 168
>gb|DV466440.1|DV466440 MTUNUL1.P50.F08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 834
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||| ||||||||||
Sbjct: 781 caaaccaaaccaatccaaaccaaa 758
>gb|BI122186.1|BI122186 I003P48P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 201
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 81 aaaccaaaccaatccaaaccaaa 59
>gb|BU886589.1|BU886589 R047G10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 522
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaac 34
|||||||||||||||||||
Sbjct: 32 aaaccaaaccaaaccaaac 50
>gb|BU897806.1|BU897806 X070A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 531
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 413 aaaccaaaccaatccaaaccaaa 391
>gb|CK093893.1|CK093893 I003P48.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I003P48 3', mRNA sequence
Length = 186
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 93 aaaccaaaccaatccaaaccaaa 115
>gb|CK094006.1|CK094006 I009P24.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I009P24 3', mRNA sequence
Length = 191
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 98 aaaccaaaccaatccaaaccaaa 120
>gb|CK115865.1|CK115865 Y016D03 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y016D03 5', mRNA sequence
Length = 351
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaac 34
|||||||||||||||||||
Sbjct: 54 aaaccaaaccaaaccaaac 72
>gb|CV235494.1|CV235494 WS0122.B21_F19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_F19 3', mRNA sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 94 caaaccaaaccaaaccaaa 112
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 94 caaaccaaaccaaaccaaa 112
>gb|CV260115.1|CV260115 WS02013.B21_D03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02013_D03 3', mRNA sequence
Length = 606
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 163 aaaccaaaccaatccaaaccaaa 185
>gb|CV261710.1|CV261710 WS02017.B21_I15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02017_I15 3', mRNA sequence
Length = 853
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 98 caaaccaaaccaaaccaaa 116
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 98 caaaccaaaccaaaccaaa 116
>gb|CV262531.1|CV262531 WS02019.B21_N05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02019_N05 3', mRNA sequence
Length = 745
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 154 aaaccaaaccaatccaaaccaaa 176
>gb|CV268545.1|CV268545 WS0205.B21_M13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_M13 3', mRNA sequence
Length = 333
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 99 caaaccaaaccaaaccaaa 117
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 99 caaaccaaaccaaaccaaa 117
>gb|CV277048.1|CV277048 WS0142.B21_I04 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_I04 3', mRNA sequence
Length = 930
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 99 caaaccaaaccaaaccaaa 117
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 99 caaaccaaaccaaaccaaa 117
>gb|CX169985.1|CX169985 C06_69-77_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 554
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaacca 36
||||||||||||| |||||||||
Sbjct: 157 acaaaccaaaccagaccaaacca 179
>gb|CX173802.1|CX173802 C09_69-100_05.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 686
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 92 aatcactttgcaccagtgg 110
|||||||||||||||||||
Sbjct: 584 aatcactttgcaccagtgg 602
>gb|CX175366.1|CX175366 D12_69-111_08.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 92 aatcactttgcaccagtgg 110
|||||||||||||||||||
Sbjct: 591 aatcactttgcaccagtgg 609
>gb|CX187470.1|CX187470 E01_45-110_09.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 285
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaa 33
|||||||||||||||||||
Sbjct: 200 caaaccaaaccaaaccaaa 182
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 200 caaaccaaaccaaaccaaa 182
>gb|BP922517.1|BP922517 BP922517 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-008_K05.f 5', mRNA sequence
Length = 390
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaac 34
|||||||||||||||||||
Sbjct: 248 aaaccaaaccaaaccaaac 230
>gb|BP923254.1|BP923254 BP923254 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-017_G06.f 5', mRNA sequence
Length = 614
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 92 aatcactttgcaccagtgg 110
|||||||||||||||||||
Sbjct: 6 aatcactttgcaccagtgg 24
>gb|BP925104.1|BP925104 BP925104 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-040_M20.f 5', mRNA sequence
Length = 528
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 92 aatcactttgcaccagtgg 110
|||||||||||||||||||
Sbjct: 6 aatcactttgcaccagtgg 24
>gb|DN486200.1|DN486200 P005F04.3pR Populus petioles cDNA library Populus tremula cDNA
clone P005F04 3', mRNA sequence
Length = 687
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaac 34
|||||||||||||||||||
Sbjct: 684 aaaccaaaccaaaccaaac 666
>gb|DT487891.1|DT487891 WS02534.B21_P05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02534_P05 3', mRNA sequence
Length = 896
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 153 aaaccaaaccaatccaaaccaaa 175
>gb|DT491231.1|DT491231 WS02547.C21_C15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02547_C15 3', mRNA sequence
Length = 734
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||| ||||||||||
Sbjct: 208 aaaccaaaccaatccaaaccaaa 230
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,865
Number of Sequences: 369679
Number of extensions: 52865
Number of successful extensions: 13994
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13779
Number of HSP's gapped (non-prelim): 132
length of query: 412
length of database: 203,408,664
effective HSP length: 18
effective length of query: 394
effective length of database: 196,754,442
effective search space: 77521250148
effective search space used: 77521250148
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)