BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521919.2.1
(2729 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX169657.1|CX169657 E08_69-98_10.ab1 leaf inoculated wit... 224 1e-056
gb|CK100170.1|CK100170 C006P40.5pR Populus strain T89 leave... 178 7e-043
gb|CN518098.1|CN518098 GQ0093.B3_O24 GQ009 Populus trichoca... 172 5e-041
gb|BI069710.1|BI069710 C006P40U Populus strain T89 leaves P... 163 4e-038
gb|AJ768076.1|AJ768076 AJ768076 Populus euphratica leaf adu... 149 7e-034
gb|BI072226.1|BI072226 C071P70U Populus strain T89 leaves P... 143 4e-032
gb|CN518115.1|CN518115 GQ0094.B3_G01 GQ009 Populus trichoca... 119 6e-025
gb|BI127636.1|BI127636 G063P64Y Populus cambium cDNA librar... 98 2e-018
gb|CK102082.1|CK102082 G063P64.5pR Populus tension wood cDN... 88 2e-015
gb|BI136479.1|BI136479 F069P04Y Populus flower cDNA library... 60 5e-007
gb|CF227503.1|CF227503 PtaD6G3G0313 Poplar cDNA library fro... 54 3e-005
gb|BI135829.1|BI135829 F059P04Y Populus flower cDNA library... 52 1e-004
gb|BI136596.1|BI136596 F070P49Y Populus flower cDNA library... 52 1e-004
gb|BI136597.1|BI136597 F070P51Y Populus flower cDNA library... 52 1e-004
gb|BI137707.1|BI137707 F092P17Y Populus flower cDNA library... 52 1e-004
gb|BU869509.1|BU869509 M130H07 Populus flower cDNA library ... 52 1e-004
gb|CK318876.1|CK318876 X9P04d02 Populus stem seasonal libra... 52 1e-004
gb|AJ769923.1|AJ769923 AJ769923 Populus euphratica leaf 3-6... 52 1e-004
gb|CV130489.1|CV130489 X9P04a01 Populus stem seasonal libra... 52 1e-004
gb|DT472445.1|DT472445 WS01226.BR.1_L10 PT-GT-FL-A-3 Populu... 52 1e-004
gb|BU826159.1|BU826159 UK117TC08 Populus apical shoot cDNA ... 50 5e-004
gb|BU881700.1|BU881700 UM66TD01 Populus flower cDNA library... 46 0.007
gb|BU881789.1|BU881789 UM67TE08 Populus flower cDNA library... 46 0.007
gb|BI072151.1|BI072151 C070P27U Populus strain T89 leaves P... 40 0.44
>gb|CX169657.1|CX169657 E08_69-98_10.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 625
Score = 224 bits (113), Expect = 1e-056
Identities = 419/521 (80%)
Strand = Plus / Minus
Query: 637 tcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttaccactt 696
|||||||| || || ||||| ||| ||||||| ||||| |||||||||| |||||| |
Sbjct: 622 tcaaatctacgccggcatttatcaaaactgttattattgcctggaataattttaccagta 563
Query: 697 ggaagtctttgcggacctcttggaaaatctatccattcaggatgtccaaactcatttccc 756
||||| | ||| || ||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 562 ggaaggcgttgatcgccccttgggaaatcaatccactcagggtgtccaaactcatttccc 503
Query: 757 atgaaattaagatagccctctcctcctaaacccattgtgataagtctaatcatcttatgt 816
|| ||||| | ||| || ||||||||||||||||| || ||||| | ||||| || ||
Sbjct: 502 ataaaattcaaatatccttctcctcctaaacccatggtaataagccggatcattttgtgc 443
Query: 817 aatgctatcccacgatcaatggtaggagttgaaggtctatcgagggccatgaaatcatac 876
|||||||| |||||||| | ||||||||| |||||||| || |||||||| || |||
Sbjct: 442 aatgctattccacgatctacaagaggagttgatggtctatcaagagccatgaagtcgtac 383
Query: 877 atatccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatga 936
|||||||||||||||||||| || ||||| |||||||| || || | ||||| ||||||
Sbjct: 382 atatccttgtccatcaaccagaatgcaatggtcttgtcaccaacaagagcttggtcatga 323
Query: 937 ctttcagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaata 996
||||||||||| | || ||||| || | |||||| || || || || ||||| |||||
Sbjct: 322 ctttcagcatatgaaacgcacttttccagccaccttctgttagtgagagtgtgtacaatg 263
Query: 997 tcacccatcttccaagtttcatcactttgcttgagaaggtcaatccatttgtcagccaca 1056
|||||||| |||| |||||| | | || |||||| ||||||||||| ||||| |
Sbjct: 262 tcacccattctccattcttcatccttcttctggagaagctcaatccatttatcagcaatg 203
Query: 1057 gccatatgcatccgatagtcaaaacctaccccaccatcgtgaacaggaagggcaaatgta 1116
||||| || | ||||| ||||| || || |||||||| || ||||||| | |||||
Sbjct: 202 gccatgtggaggcgataatcaaatcccacgccaccatcttggacaggaatgcagaatgtt 143
Query: 1117 ggcattccactaacatcttcaccaatggttacagcctcagg 1157
||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 142 ggcattccactgacatcttcaccaatgctaacagcctcagg 102
>gb|CK100170.1|CK100170 C006P40.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C006P40 5', mRNA sequence
Length = 508
Score = 178 bits (90), Expect = 7e-043
Identities = 353/434 (81%), Gaps = 5/434 (1%)
Strand = Plus / Minus
Query: 519 tttccgggaaatatactggtgatcagatgtcatgaattcatatttttgctcaagatgttg 578
|||||| || ||||| ||||| |||||||||||||| |||| ||| |||| ||| ||
Sbjct: 493 tttccgtgatatatattggtgctcagatgtcatgaaaccatagatttcttcaatatgctg 434
Query: 579 cattgcctgatcaaactcttgcataccatgatacctaagatagtctgcatcacc-caggt 637
|||||||||||| || ||||||| |||||||| || ||||| |||||||| || ||| |
Sbjct: 433 cattgcctgatcgaattcttgcagtccatgatatcttagataatctgcatccccgcagat 374
Query: 638 caaatcttc-gacgacatttgtcataactgttgttattccctggaataaacttaccactt 696
||||||| | | || ||||| ||||||||||| ||||| |||||||||| |||||| |
Sbjct: 373 caaatctacggccggcatttatcataactgttattattgcctggaataattttaccagta 314
Query: 697 ggaagtctttgcggacctcttggaaaatctatccattcaggatgtccaaactcatttccc 756
||||| | || ||| ||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 313 ggaaggcgctgatcaccccttgggaaatcaatccactcagggtgtccaaactcatttccc 254
Query: 757 atgaaatt-aagatagccctctcctcctaaacc-ca-ttgtgataagtctaatcatctta 813
|| ||||| | ||| || |||||||||||||| || || ||||| | ||||| ||
Sbjct: 253 ataaaattcgaaatatccttctcctcctaaaccgcagaggtaataagccggatcattttg 194
Query: 814 tgtaatgctatcccacgatcaatggtaggagttgaaggtctatcgagggccatgaaatca 873
|| |||||||| |||||||| | ||||||||| |||||||| || |||||||| ||
Sbjct: 193 tgcaatgctattccacgatctacaagaggagttgatggtctatcaagagccatgaagtcg 134
Query: 874 tacatatccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatca 933
||||||||||||||||||||||| || ||||| |||||||| || || | ||||| |||
Sbjct: 133 tacatatccttgtccatcaaccagaatgcaatggtcttgtcaccaacaagagcttggtca 74
Query: 934 tgactttcagcata 947
||||||||||||||
Sbjct: 73 tgactttcagcata 60
>gb|CN518098.1|CN518098 GQ0093.B3_O24 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_O24 5', mRNA sequence
Length = 530
Score = 172 bits (87), Expect = 5e-041
Identities = 388/489 (79%)
Strand = Plus / Minus
Query: 840 aggagttgaaggtctatcgagggccatgaaatcatacatatccttgtccatcaaccaaaa 899
||||||||| |||||||| || |||||||| || ||||||| |||||||||||||| ||
Sbjct: 492 aggagttgatggtctatcaagagccatgaagtcgtacatatnnttgtccatcaaccagaa 433
Query: 900 cgcaatagtcttgtcgccgactaatgcttgatcatgactttcagcataagttacacactt 959
||||| |||||||| || || | ||||| ||||||||||||||||| | || |||||
Sbjct: 432 tgcaatggtcttgtcaccaacaagagcttggtcatgactttcagcatatgaaacgcactt 373
Query: 960 ctctaaccacctcctatttgtcagtgtgtgcacaatatcacccatcttccaagtttcatc 1019
|| | |||||| || || || || ||||| ||||| |||||||| |||| ||||||
Sbjct: 372 ttccagccaccttctgttagtgagagtgtgtacaatgtcacccattctccattcttcatc 313
Query: 1020 actttgcttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaa 1079
| | || |||||| ||||||||||| ||||| | ||||| || | ||||| |||||
Sbjct: 312 cttcttctggagaagctcaatccatttatcagcaatggccatgtggaggcgataatcaaa 253
Query: 1080 acctaccccaccatcgtgaacaggaagggcaaatgtaggcattccactaacatcttcacc 1139
|| || |||||||| || ||||||| | ||||| ||||||||||| |||||||||||
Sbjct: 252 tcccacgccaccatcttggacaggaatgcagaatgttggcattccactgacatcttcacc 193
Query: 1140 aatggttacagcctcaggataaagtccatgaattagatcatttaccagcatcaagtaaac 1199
|||| | ||||||||||| | || |||||||| | |||||| || | ||||| || ||
Sbjct: 192 aatgctaacagcctcagggaagagaccatgaatcatatcattaacaaccatcagatatac 133
Query: 1200 cactgcatctacatcggtggcaaagccaaaatactcattgaagttccccgtaaatgttac 1259
|| ||||||| || || ||| | ||||| ||||||||| |||| || ||||| || |
Sbjct: 132 gacagcatctatgtcagttgcatatccaaagtactcattgtagtttccagtaaaagtcat 73
Query: 1260 ttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatcaaa 1319
|| || || ||||| ||||||||||| || |||||||||||||| | ||| ||||||||
Sbjct: 72 ctgcaacccatggtgggtgtacatcatcgaagtcacaccatcaaatctgaacccatcaaa 13
Query: 1320 cttatattc 1328
||| |||||
Sbjct: 12 cttgtattc 4
>gb|BI069710.1|BI069710 C006P40U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 372
Score = 163 bits (82), Expect = 4e-038
Identities = 238/290 (82%)
Strand = Plus / Minus
Query: 715 cttggaaaatctatccattcaggatgtccaaactcatttcccatgaaattaagatagccc 774
||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| | ||| ||
Sbjct: 302 cttgggaaatcaatccactcagggtgtccaaactcatttcccataaaattcaaatatcct 243
Query: 775 tctcctcctaaacccattgtgataagtctaatcatcttatgtaatgctatcccacgatca 834
|||||||||||||||| || ||||| | ||||| || || |||||||| ||||||||
Sbjct: 242 tctcctcctaaacccaaggtaataagccggatcattttgtgcaatgctattccacgatct 183
Query: 835 atggtaggagttgaaggtctatcgagggccatgaaatcatacatatccttgtccatcaac 894
| ||||||||| |||||||| || |||||||| || |||||||||||||||||||||
Sbjct: 182 acaagaggagttgatggtctatcaagagccatgaagtcgtacatatccttgtccatcaac 123
Query: 895 caaaacgcaatagtcttgtcgccgactaatgcttgatcatgactttcagcataagttaca 954
|| || ||||| |||||||| || || | ||||| ||||||||||||||||| | ||
Sbjct: 122 cagaatgcaatggtcttgtcaccaacaagagcttggtcatgactttcagcatatgaaacg 63
Query: 955 cacttctctaaccacctcctatttgtcagtgtgtgcacaatatcacccat 1004
||||| || | |||||| || || || || ||||| ||||| ||||||||
Sbjct: 62 cacttttccagccaccttctgttagtgagagtgtgtacaatgtcacccat 13
>gb|AJ768076.1|AJ768076 AJ768076 Populus euphratica leaf adult Populus euphratica cDNA clone
P0000100013G12F1, mRNA sequence
Length = 666
Score = 149 bits (75), Expect = 7e-034
Identities = 240/295 (81%)
Strand = Plus / Minus
Query: 1270 tggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccatcaaacttatattcc 1329
||||| ||||||||||| || |||||||||||||| | ||| |||||||||||||||||
Sbjct: 627 tggtgggtgtacatcatcgaagtcacaccatcaaatctgaacccatcaaacttatattca 568
Query: 1330 tcgagccaccatctagcattggagagaagaaatcttaaaacttcccagttcccatagtta 1389
|| ||||||||||| ||||| || |||||||| || | ||||||||| | ||||||||
Sbjct: 567 tccagccaccatcttgcatttgaaagaagaaacctcagtacttcccagctgccatagttg 508
Query: 1390 aataggcgagaatcccacatccagtgatggccacgtggaccactgtgaaagtaatgtgta 1449
|| |||||||| ||||||||||| ||||| || |||| |||| ||| ||||| || ||
Sbjct: 507 aaaaggcgagagtcccacatccaatgatgtccccgtgaaccagagtggaagtagtgatta 448
Query: 1450 tctgtaccatcaaaaccattcaacccatccagagtattacttgacgcatgactatgaacc 1509
|| || ||||| || |||||| ||||||| |||||| | || ||||| || |||||
Sbjct: 447 tcagttccatcgaacatattcaaaccatccaaagtattgttcgatgcatggctgtgaaca 388
Query: 1510 acatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagacttca 1564
| |||||||||||| |||| ||| | ||| || ||| |||| |||| ||||||||
Sbjct: 387 atatccatgagaacaagcagacctaactcgtgagctttatctatcagagacttca 333
Score = 75.8 bits (38), Expect = 8e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 1747 ctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttgcgca 1806
||||||||||||||||| | |||||| |||| | ||| ||||||| || ||||| | |
Sbjct: 150 ctactcattccgacatgagcttcataaatcctaagtgactttggtctctttggttgagga 91
Query: 1807 tgcctgaacacatactttacctcttcaggaggatcataataaatcccatcatatggtatt 1866
|| |||| | ||||||| |||| ||||| |||||||| ||||| |||| ||||| |||
Sbjct: 90 tgtttgaatatatacttttcctcctcaggtggatcatagtaaatgccattgtatgggatt 31
Query: 1867 tctcctggggcctgcactgagtactt 1892
|||||||| ||||| |||||| ||||
Sbjct: 30 tctcctggagcctgtactgagaactt 5
>gb|BI072226.1|BI072226 C071P70U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 279
Score = 143 bits (72), Expect = 4e-032
Identities = 168/200 (84%)
Strand = Plus / Minus
Query: 715 cttggaaaatctatccattcaggatgtccaaactcatttcccatgaaattaagatagccc 774
||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| | ||| ||
Sbjct: 218 cttgggaaatcaatccactcagggtgtccaaactcatttcccataaaattcaaatatcct 159
Query: 775 tctcctcctaaacccattgtgataagtctaatcatcttatgtaatgctatcccacgatca 834
|||||||||||||||| || ||||| | ||||| || || |||||||| ||||||||
Sbjct: 158 tctcctcctaaacccaaggtaataagccggatcattttgtgcaatgctattccacgatct 99
Query: 835 atggtaggagttgaaggtctatcgagggccatgaaatcatacatatccttgtccatcaac 894
| ||||||||| |||||||| || |||||||| || |||||||||||||||||||||
Sbjct: 98 acaagaggagttgatggtctatcaagagccatgaagtcgtacatatccttgtccatcaac 39
Query: 895 caaaacgcaatagtcttgtc 914
|| || ||||| ||||||||
Sbjct: 38 cagaatgcaatggtcttgtc 19
>gb|CN518115.1|CN518115 GQ0094.B3_G01 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_G01 5', mRNA sequence
Length = 480
Score = 119 bits (60), Expect = 6e-025
Identities = 318/404 (78%)
Strand = Plus / Minus
Query: 925 gcttgatcatgactttcagcataagttacacacttctctaaccacctcctatttgtcagt 984
||||| ||||||||||||||||| | || ||||| || | |||||| || || || ||
Sbjct: 407 gcttggtcatgactttcagcatatgaaacgcacttttccagccaccttctgttagtgaga 348
Query: 985 gtgtgcacaatatcacccatcttccaagtttcatcactttgcttgagaaggtcaatccat 1044
||||| ||||| |||||||| |||| |||||| | | || |||||| |||||||||
Sbjct: 347 gtgtgtacaatgtcacccattctccattcttcatccttcttctggagaagctcaatccat 288
Query: 1045 ttgtcagccacagccatatgcatccgatagtcaaaacctaccccaccatcgtgaacagga 1104
|| ||||| | ||||| || | ||||| ||||| || || |||||||| || ||||||
Sbjct: 287 ttatcagcaatggccatgtggaggcgataatcaaatcccacgccaccatcttggacagga 228
Query: 1105 agggcaaatgtaggcattccactaacatcttcaccaatggttacagcctcaggataaagt 1164
| | ||||| ||||||||||| ||||||||||||||| | ||||||||||| | ||
Sbjct: 227 atgcagaatgttggcattccactgacatcttcaccaatgctaacagcctcagggaagaga 168
Query: 1165 ccatgaattagatcatttaccagcatcaagtaaaccactgcatctacatcggtggcaaag 1224
|||||||| | |||||| || | ||||| || || || ||||||| || || ||| |
Sbjct: 167 ccatgaatcatatcattaacaaccatcagatatacgacagcatctatgtcagttgcatat 108
Query: 1225 ccaaaatactcattgaagttccccgtaaatgttacttgtaatccgtggtgagtgtacatc 1284
||||| ||||||||| |||| || ||||| || | || || || ||||| |||||||||
Sbjct: 107 ccaaagtactcattgtagtttccagtaaaagtcatctgcaacccatggtgggtgtacatc 48
Query: 1285 atggaggtcacaccatcaaaacggaaaccatcaaacttatattc 1328
|| || |||||||||||||| | ||| ||||||||||| |||||
Sbjct: 47 atcgaagtcacaccatcaaatctgaacccatcaaacttgtattc 4
>gb|BI127636.1|BI127636 G063P64Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 264
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 519 tttccgggaaatatactggtgatcagatgtcatgaattcatatttttgctcaagatgttg 578
|||||| || ||||| ||||| |||||||||||||| |||| ||| |||| ||| ||
Sbjct: 145 tttccgtgatatatattggtgctcagatgtcatgaaaccatagatttcttcaatatgctg 86
Query: 579 cattgcctgatcaaactcttgcataccatgatacctaagatagtctgcatcacccaggtc 638
||||||||||||||| ||||||| |||||||| || ||||| |||||||| ||||| ||
Sbjct: 85 cattgcctgatcaaattcttgcagtccatgatatcttagataatctgcatcccccagatc 26
Query: 639 aaatcttcgacgacatttgtcataa 663
|||||| || || ||||| ||||||
Sbjct: 25 aaatctacgccggcatttatcataa 1
>gb|CK102082.1|CK102082 G063P64.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G063P64 5', mRNA sequence
Length = 394
Score = 87.7 bits (44), Expect = 2e-015
Identities = 104/124 (83%)
Strand = Plus / Minus
Query: 519 tttccgggaaatatactggtgatcagatgtcatgaattcatatttttgctcaagatgttg 578
|||||| || ||||| ||||| |||||||||||||| |||| ||| |||| ||| ||
Sbjct: 144 tttccgtgatatatattggtgctcagatgtcatgaaaccatagatttcttcaatatgctg 85
Query: 579 cattgcctgatcaaactcttgcataccatgatacctaagatagtctgcatcacccaggtc 638
||||||||||||||| ||||||| |||||||| || ||||| |||||||| ||||| ||
Sbjct: 84 cattgcctgatcaaattcttgcagtccatgatatcttagataatctgcatcccccagatc 25
Query: 639 aaat 642
||||
Sbjct: 24 aaat 21
>gb|BI136479.1|BI136479 F069P04Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 321
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctctcctccta 784
||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 302 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctctccaccta 245
>gb|CF227503.1|CF227503 PtaD6G3G0313 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 559
Score = 54.0 bits (27), Expect = 3e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 519 tttccgggaaatatactggtgatcagatgtcatgaattcatatttttgctcaagatgttg 578
|||||| || ||||| ||||| |||||||||||||| |||| ||| |||||||| ||
Sbjct: 104 tttccgtgatatatattggtgctcagatgtcatgaaaccatagatttcttcaagatgctg 45
Query: 579 cattgcctgatcaaa 593
||||||| |||||||
Sbjct: 44 cattgcccgatcaaa 30
>gb|BI135829.1|BI135829 F059P04Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 238
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 69 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctc 20
>gb|BI136596.1|BI136596 F070P49Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 498
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 302 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctc 253
>gb|BI136597.1|BI136597 F070P51Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 388
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 302 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctc 253
>gb|BI137707.1|BI137707 F092P17Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 429
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 302 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctc 253
>gb|BU869509.1|BU869509 M130H07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 721
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 163 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctc 114
>gb|CK318876.1|CK318876 X9P04d02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 759
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 593 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctc 544
>gb|AJ769923.1|AJ769923 AJ769923 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100004F03F1, mRNA sequence
Length = 604
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 173 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctc 222
>gb|CV130489.1|CV130489 X9P04a01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 791
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 759 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctc 710
>gb|DT472445.1|DT472445 WS01226.BR.1_L10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_L10 5', mRNA sequence
Length = 859
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 211 atccactcaggatgcccaaattcatttcccataaaattaaggtatccctc 162
>gb|BU826159.1|BU826159 UK117TC08 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 568
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 748 tcatttcccatgaaattaagatagccctctcctccta 784
||||||||||| ||||||||||| ||||| |||||||
Sbjct: 482 tcatttcccataaaattaagatatccctcgcctccta 446
>gb|BU881700.1|BU881700 UM66TD01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 534
Score = 46.1 bits (23), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||| | ||||||||||| |||||||| || |||||
Sbjct: 504 atccactcaggatgcccanattcatttcccataaaattaaggtatccctc 455
>gb|BU881789.1|BU881789 UM67TE08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 625
Score = 46.1 bits (23), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 727 atccattcaggatgtccaaactcatttcccatgaaattaagatagccctc 776
||||| |||||||| ||| | ||||||||||| |||||||| || |||||
Sbjct: 510 atccactcaggatgcccanattcatttcccataaaattaaggtatccctc 461
>gb|BI072151.1|BI072151 C070P27U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 242
Score = 40.1 bits (20), Expect = 0.44
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 925 gcttgatcatgactttcagcataagttacacacttctctaaccacctcctatttgtcagt 984
||||| ||||||||||||||||| | || ||||| || | |||||| || || || ||
Sbjct: 204 gcttggtcatgactttcagcatatgaaacgcacttttccagccaccttctgttagtgaga 145
Query: 985 gtgtgcacaatatcacccat 1004
||||| ||||| ||||||||
Sbjct: 144 gtgtgtacaatgtcacccat 125
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 291,050
Number of Sequences: 369679
Number of extensions: 291050
Number of successful extensions: 80321
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80254
Number of HSP's gapped (non-prelim): 54
length of query: 2729
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2709
effective length of database: 196,015,084
effective search space: 531004862556
effective search space used: 531004862556
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)