BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521334.2.1
(1277 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV271171.1|CV271171 WS0153.B21_P17 PTxN-IB-A-6 Populus t... 82 6e-014
gb|BI129489.1|BI129489 G091P32Y Populus cambium cDNA librar... 74 1e-011
gb|CK318969.1|CK318969 X9P05d09 Populus stem seasonal libra... 74 1e-011
gb|DT473295.1|DT473295 WS01229.BR_D10 PT-GT-FL-A-3 Populus ... 74 1e-011
gb|DT500364.1|DT500364 PX0015.BR_D16 PT-X-FL-A-1 Populus tr... 74 1e-011
gb|CF235386.1|CF235386 PtaJXT0022C11C1105 Poplar cDNA libra... 70 2e-010
gb|AI165916.1|AI165916 B004p25u Hybrid aspen plasmid librar... 68 9e-010
gb|BU867659.1|BU867659 M102G11 Populus flower cDNA library ... 68 9e-010
gb|CK090634.1|CK090634 F017P45.3pR Populus flower cDNA libr... 68 9e-010
gb|CX658922.1|CX658922 PO01024B02 Poplar SC cDNA library Po... 66 4e-009
gb|CX658951.1|CX658951 PO01024E07 Poplar SC cDNA library Po... 66 4e-009
gb|CX659100.1|CX659100 PO01026E05 Poplar SC cDNA library Po... 66 4e-009
gb|CX659245.1|CX659245 PO01028C05 Poplar SC cDNA library Po... 66 4e-009
gb|CF230816.1|CF230816 PtaC0013E9E0909 Poplar cDNA library ... 62 6e-008
gb|AJ775588.1|AJ775588 AJ775588 Populus euphratica shoot 3-... 62 6e-008
gb|BI127680.1|BI127680 G064P30Y Populus cambium cDNA librar... 60 2e-007
gb|CF233944.1|CF233944 PtaJXO0029E1E0109 Poplar cDNA librar... 58 9e-007
gb|BU891224.1|BU891224 P047E07 Populus petioles cDNA librar... 54 1e-005
gb|CF233072.1|CF233072 PtaJXO0019A5A0501 Poplar cDNA librar... 54 1e-005
gb|CK101019.1|CK101019 F017P45.5pR Populus flower cDNA libr... 54 1e-005
gb|CN518574.1|CN518574 GQ0101.B3_I14 GQ010 Populus trichoca... 54 1e-005
gb|AI166544.1|AI166544 xylem.est.366 Poplar xylem Lambda ZA... 46 0.003
gb|BU832194.1|BU832194 T030F05 Populus apical shoot cDNA li... 46 0.003
gb|BU837360.1|BU837360 T097H10 Populus apical shoot cDNA li... 46 0.003
gb|CF231180.1|CF231180 PtaC0018D12D1208 Poplar cDNA library... 46 0.003
gb|AJ774185.1|AJ774185 AJ774185 Populus euphratica shoot 3-... 46 0.003
gb|CV248307.1|CV248307 WS01120.B21_D10 PT-P-FL-A-2 Populus ... 46 0.003
gb|CX660033.1|CX660033 PO01017B10 Poplar SC cDNA library Po... 46 0.003
gb|DT495351.1|DT495351 WS01120.BR_D10 PT-P-FL-A-2 Populus t... 46 0.003
gb|BU825495.1|BU825495 UK109TE01 Populus apical shoot cDNA ... 44 0.013
gb|BU826142.1|BU826142 UK117TB01 Populus apical shoot cDNA ... 44 0.013
gb|BU828463.1|BU828463 K023P55P Populus apical shoot cDNA l... 44 0.013
gb|CF228298.1|CF228298 PtaXM0011D12D1208 Poplar cDNA librar... 44 0.013
gb|CF234007.1|CF234007 PtaJXO1C9C0905 Poplar cDNA library f... 44 0.013
>gb|CV271171.1|CV271171 WS0153.B21_P17 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_P17 3', mRNA sequence
Length = 938
Score = 81.8 bits (41), Expect = 6e-014
Identities = 122/149 (81%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 462 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 521
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | ||||||| | ||||| || || ||||||||||||||||| ||
Sbjct: 522 gaggtgaacacgatgttggcaaaatcagaggctaagatacttcatgagaagatctcagac 581
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 582 aaagcttacagtgatgatgaaatcatcag 610
>gb|BI129489.1|BI129489 G091P32Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 377
Score = 73.8 bits (37), Expect = 1e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 130 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 189
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | ||||||| | ||||| || || ||||||||||||||||| |
Sbjct: 190 gaggtgaacacgatgttggcaaaatcagaggctaagatacttcatgagaagatctcagat 249
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 250 aaagcttacagtgatgatgaaatcatcag 278
>gb|CK318969.1|CK318969 X9P05d09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 678
Score = 73.8 bits (37), Expect = 1e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 346 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 405
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | ||||||| | ||||| || || ||||||||||||||||| |
Sbjct: 406 gaggtgaacacgatgttggcaaaatcagaggctaagatacttcatgagaagatctcagat 465
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 466 aaagcttacagtgatgatgaaatcatcag 494
>gb|DT473295.1|DT473295 WS01229.BR_D10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_D10 5', mRNA sequence
Length = 977
Score = 73.8 bits (37), Expect = 1e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 488 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 547
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | ||||||| | ||||| || || ||||||||||||||||| |
Sbjct: 548 gaggtgaacacgatgttggcaaaatcagaggctaagatacttcatgagaagatctcagat 607
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 608 aaagcttacagtgatgatgaaatcatcag 636
>gb|DT500364.1|DT500364 PX0015.BR_D16 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_D16
5', mRNA sequence
Length = 703
Score = 73.8 bits (37), Expect = 1e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 492 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 551
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | ||||||| | ||||| || || ||||||||||||||||| |
Sbjct: 552 gaggtgaacacgatgttggcaaaatcagaggctaagatacttcatgagaagatctcagat 611
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 612 aaagcttacagtgatgatgaaatcatcag 640
>gb|CF235386.1|CF235386 PtaJXT0022C11C1105 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 69.9 bits (35), Expect = 2e-010
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||| ||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 498 actggagacttccggaagctgttggttccccttgtaagtgcattccgatacgagggagaa 557
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | ||||||| | ||||| || || ||||||||||||||||| |
Sbjct: 558 gaggtgaacacgatgttggcaaaatcagangctaagatacttcatgagaagatctcanat 617
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 618 aaagcttacagtgatgatgaaatcatcag 646
>gb|AI165916.1|AI165916 B004p25u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 373
Score = 67.9 bits (34), Expect = 9e-010
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || |||| |||| | | ||| || || ||| |
Sbjct: 129 actggagacttccgcaagctgttggttccccttgnaagtgcattccgatacgagggagaa 188
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | ||||||| | ||||| || || ||||||||||||||||| |
Sbjct: 189 gaggtgaacacgatgttggcaaaatcagaggctaagatacttcatgagaagatctcagat 248
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 249 aaagcttacagtgatgatgaaatcatcag 277
>gb|BU867659.1|BU867659 M102G11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 728
Score = 67.9 bits (34), Expect = 9e-010
Identities = 136/170 (80%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| ||||| ||| |
Sbjct: 496 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatatgagggagaa 555
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | |||||| | ||||| || || ||||||||||||||||| |
Sbjct: 556 gaggtgaacacgattttggcaaaatcagaggctaagatacttcatgagaagatctcagat 615
Query: 628 aaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaa 677
|| ||||| |||||||| ||||||||||| || || || || ||||||||
Sbjct: 616 aaagcttatagtgatgaagagatcatcaggattctgactacaaggagcaa 665
>gb|CK090634.1|CK090634 F017P45.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F017P45 3', mRNA sequence
Length = 452
Score = 67.9 bits (34), Expect = 9e-010
Identities = 136/170 (80%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| ||||| ||| |
Sbjct: 21 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatatgagggagaa 80
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | |||||| | ||||| || || ||||||||||||||||| |
Sbjct: 81 gaggtgaacacgattttggcaaaatcagaggctaagatacttcatgagaagatctcagat 140
Query: 628 aaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaa 677
|| ||||| |||||||| ||||||||||| || || || || ||||||||
Sbjct: 141 aaagcttatagtgatgaagagatcatcaggattctgactacaaggagcaa 190
>gb|CX658922.1|CX658922 PO01024B02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01024B02 5', mRNA sequence
Length = 626
Score = 65.9 bits (33), Expect = 4e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 469 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 528
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | | ||||| | |||||||| || ||||||| ||||||||| |
Sbjct: 529 gaggtgaacacgatgctggcaaaatcagaagctaagatacttcacgagaagatctcagat 588
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 589 aaagcttacagtgatgatgaaatcatcag 617
>gb|CX658951.1|CX658951 PO01024E07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01024E07 5', mRNA sequence
Length = 729
Score = 65.9 bits (33), Expect = 4e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 469 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 528
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | | ||||| | |||||||| || ||||||| ||||||||| |
Sbjct: 529 gaggtgaacacgatgctggcaaaatcagaagctaagatacttcacgagaagatctcagat 588
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 589 aaagcttacagtgatgatgaaatcatcag 617
>gb|CX659100.1|CX659100 PO01026E05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01026E05 5', mRNA sequence
Length = 706
Score = 65.9 bits (33), Expect = 4e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 469 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 528
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | | ||||| | |||||||| || ||||||| ||||||||| |
Sbjct: 529 gaggtgaacacgatgctggcaaaatcagaagctaagatacttcacgagaagatctcagat 588
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 589 aaagcttacagtgatgatgaaatcatcag 617
>gb|CX659245.1|CX659245 PO01028C05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01028C05 5', mRNA sequence
Length = 687
Score = 65.9 bits (33), Expect = 4e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 459 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 518
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | | ||||| | |||||||| || ||||||| ||||||||| |
Sbjct: 519 gaggtgaacacgatgctggcaaaatcagaagctaagatacttcacgagaagatctcagat 578
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 579 aaagcttacagtgatgatgaaatcatcag 607
>gb|CF230816.1|CF230816 PtaC0013E9E0909 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 61.9 bits (31), Expect = 6e-008
Identities = 119/149 (79%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||| ||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 492 actggagacttccggaagctgttggttccccttgtaagtgcattccgatacganggagaa 551
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| ||||||| | ||||| || || ||||||||||||||||| |
Sbjct: 552 gaggtgaacacngtgttggcaaaatcagaggctaagatacttcatgagaagatctcagat 611
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 612 aaagcttacagtgatgatgaaatcatcag 640
>gb|AJ775588.1|AJ775588 AJ775588 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300034C06F1, mRNA sequence
Length = 685
Score = 61.9 bits (31), Expect = 6e-008
Identities = 138/171 (80%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| ||||| ||| |
Sbjct: 458 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatatgagggagaa 517
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc-catca 626
||||| ||||| | |||||| | ||||| || || ||||||||||||||||| || |
Sbjct: 518 gaggtgaacacgattttggcaaaatcagaggctaagatacttcatgagaagatctcagc- 576
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaa 677
|| ||||| |||||||| ||||||||||| || || || || ||||||||
Sbjct: 577 taaagcttatagtgatgaagagatcatcaggattctgactaccaggagcaa 627
>gb|BI127680.1|BI127680 G064P30Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 514
Score = 60.0 bits (30), Expect = 2e-007
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 399 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatacgagggagaa 458
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc 621
||||| ||||| | ||||||| | ||||| || || |||||||||||||||||
Sbjct: 459 gaggtgaacacgatgttggcaaaatcagaggctaagatacttcatgagaagatc 512
>gb|CF233944.1|CF233944 PtaJXO0029E1E0109 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 634
Score = 58.0 bits (29), Expect = 9e-007
Identities = 119/149 (79%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||| ||||| ||||| || ||||||||| | | ||| || || ||| |
Sbjct: 371 actggagacttccggaagctgttggttccccttgtaagtgcattccgatacgagggagaa 430
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||| ||||| | ||||||| | ||||| || || |||||||||||| |||| |
Sbjct: 431 gaggtgaacacgatgttggcaaaatcagaggctaagatacttcatgagaggatctcagat 490
Query: 628 aaggcttacagtgatgatgagatcatcag 656
|| ||||||||||||||||| ||||||||
Sbjct: 491 aaagcttacagtgatgatgaaatcatcag 519
>gb|BU891224.1|BU891224 P047E07 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 655
Score = 54.0 bits (27), Expect = 1e-005
Identities = 137/171 (80%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| |||| || ||||||||| ||| ||| || || ||| |
Sbjct: 450 actggagacttccgcaagctgctggttccccttgtaagtgctttccgatacgagggagaa 509
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc-catca 626
||||| ||||| | |||||| | ||||| || ||| |||| |||||||||||| || |
Sbjct: 510 gaggttaacacgattttggcaaaatcagaggctaaaatactccatgagaagatctcagc- 568
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaa 677
|| ||||| |||||||| ||||||||||| || || || || ||||||||
Sbjct: 569 taaagcttatagtgatgaagagatcatcaggattctgactacaaggagcaa 619
>gb|CF233072.1|CF233072 PtaJXO0019A5A0501 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 695
Score = 54.0 bits (27), Expect = 1e-005
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 516 cttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccagaggtcaa 575
|||||| ||||| ||||| || ||||||||| | | ||| || || ||| |||||| ||
Sbjct: 497 cttccggaagctgttggttccccttgtaagtgcattccgatacgagggaggagaggtgaa 556
Query: 576 cacaaggttggcacactcagaagccaaactacttcatgagaagatccatcacaaggctta 635
||| | ||||| | | ||||| || || ||||||||||||||||| | || |||||
Sbjct: 557 cacnatgttggtaaaatcagaggctaagatacttcatgagaagatctcanataaagctta 616
Query: 636 cagtgatgatgagatcatcag 656
|||||||||||| ||||||||
Sbjct: 617 cagtgatgatgaaatcatcag 637
>gb|CK101019.1|CK101019 F017P45.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F017P45 5', mRNA sequence
Length = 452
Score = 54.0 bits (27), Expect = 1e-005
Identities = 136/171 (79%), Gaps = 1/171 (0%)
Strand = Plus / Minus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| ||||| ||| |
Sbjct: 432 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatatgagggagaa 373
Query: 568 gaggtcaacacaaggttggc-acactcagaagccaaactacttcatgagaagatccatca 626
||||| ||||| | ||||| | | ||||| || || ||||||||||||||||| |
Sbjct: 372 gaggtgaacacgattttggcaaaaatcagaggctaagatacttcatgagaagatctcaga 313
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaa 677
|| ||||| |||||||| ||||||||||| || || || || ||||||||
Sbjct: 312 taaagcttatagtgatgaagagatcatcaggattctgactacaaggagcaa 262
>gb|CN518574.1|CN518574 GQ0101.B3_I14 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0101_I14 5', mRNA sequence
Length = 727
Score = 54.0 bits (27), Expect = 1e-005
Identities = 137/171 (80%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| ||||| || ||||||||| | | ||| ||||| ||| |
Sbjct: 220 actggagacttccgcaagctgttggttccccttgtaagtgcattccgatatgagggagaa 279
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc-catca 626
||||| ||||| | ||||| | ||||| || || ||||||||||||||||| || |
Sbjct: 280 gaggtgaacacgattttggcgaaatcagaggctaagatacttcatgagaagatctcagc- 338
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaa 677
|| ||||| |||||||| ||||||||||| || || || || ||||||||
Sbjct: 339 taaagcttatagtgatgaagagatcatcaggattctgactacaaggagcaa 389
>gb|AI166544.1|AI166544 xylem.est.366 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 519
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagt 546
||||| |||||||||||||| ||||| || |||||||||
Sbjct: 463 actggagacttccgcaagctgttggttccccttgtaagt 501
>gb|BU832194.1|BU832194 T030F05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 707
Score = 46.1 bits (23), Expect = 0.003
Identities = 136/171 (79%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| |||| || ||||||||| ||| ||| || || ||| |
Sbjct: 485 actggagacttccgcaagctgctggttccccttgtaagtgctttccgatacgagggagaa 544
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc-catca 626
||||| ||||| | |||||| | ||||| || || |||| |||||||||||| || |
Sbjct: 545 gaggttaacacgattttggcaaaatcagaggctaagatactccatgagaagatctcagc- 603
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaa 677
|| ||||| |||||||| ||||||||||| || || || || ||||||||
Sbjct: 604 taaagcttatagtgatgaagagatcatcaggattctgactacaaggagcaa 654
>gb|BU837360.1|BU837360 T097H10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 763
Score = 46.1 bits (23), Expect = 0.003
Identities = 136/171 (79%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| |||| || ||||||||| ||| ||| || || ||| |
Sbjct: 488 actggagacttccgcaagctgctggtcccccttgtaagtgctttccgatacgagggagaa 547
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc-catca 626
||||| ||||| | |||||| | ||||| || || |||| |||||||||||| || |
Sbjct: 548 gaggttaacacgattttggcaaaatcagaggctaagatactccatgagaagatctcagc- 606
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaa 677
|| ||||| |||||||| ||||||||||| || || || || ||||||||
Sbjct: 607 taaagcttatagtgatgaagagatcatcaggattctgactacaaggagcaa 657
>gb|CF231180.1|CF231180 PtaC0018D12D1208 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 740
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagt 546
||||| |||||||||||||| ||||| || |||||||||
Sbjct: 494 actggagacttccgcaagctgttggttccccttgtaagt 532
>gb|AJ774185.1|AJ774185 AJ774185 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300013G02F1, mRNA sequence
Length = 537
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagt 546
||||| |||||||||||||| ||||| || |||||||||
Sbjct: 470 actggagacttccgcaagctgttggttccccttgtaagt 508
>gb|CV248307.1|CV248307 WS01120.B21_D10 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_D10 3', mRNA sequence
Length = 590
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagt 546
||||| |||||||||||||| ||||| || |||||||||
Sbjct: 71 actggagacttccgcaagctgttggttccccttgtaagt 33
>gb|CX660033.1|CX660033 PO01017B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01017B10 5', mRNA sequence
Length = 697
Score = 46.1 bits (23), Expect = 0.003
Identities = 136/171 (79%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| |||| || ||||||||| ||| ||| || || ||| |
Sbjct: 469 actggagacttccgcaagctgctggttccccttgtaagtgctttccgatacgagggagaa 528
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc-catca 626
||||| ||||| | |||||| | ||||| || || |||| |||||||||||| || |
Sbjct: 529 gaggtgaacacgattttggcaaaatcagaggctaagatactccatgagaagatctcagc- 587
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaa 677
|| ||||| |||||||| ||||||||||| || || || || ||||||||
Sbjct: 588 taaagcttatagtgatgaagagatcatcaggattctgactacaaggagcaa 638
>gb|DT495351.1|DT495351 WS01120.BR_D10 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_D10 5', mRNA sequence
Length = 558
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagt 546
||||| |||||||||||||| ||||| || |||||||||
Sbjct: 488 actggagacttccgcaagctgttggttccccttgtaagt 526
>gb|BU825495.1|BU825495 UK109TE01 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 693
Score = 44.1 bits (22), Expect = 0.013
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| |||| || ||||||||| ||| ||| || || ||| |
Sbjct: 486 actggagacttccgcaagctgctggttccccttgtaagtgctttccgatacgagggagaa 545
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc 621
||||| ||||| | |||||| | ||||| || || |||| ||||||||||||
Sbjct: 546 gaggttaacacgattttggcaaaatcagaggctaagatactccatgagaagatc 599
>gb|BU826142.1|BU826142 UK117TB01 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 622
Score = 44.1 bits (22), Expect = 0.013
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| |||| || ||||||||| ||| ||| || || ||| |
Sbjct: 488 actggagacttccgcaagctgctggttccccttgtaagtgctttccgatacgagggagaa 547
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc 621
||||| ||||| | |||||| | ||||| || || |||| ||||||||||||
Sbjct: 548 gaggttaacacgattttggcaaaatcagaggctaagatactccatgagaagatc 601
>gb|BU828463.1|BU828463 K023P55P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.013
Identities = 92/114 (80%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
||||| |||||||||||||| |||| || ||||||||| ||| ||| || || ||| |
Sbjct: 467 actggagacttccgcaagctgctggttccccttgtaagtgctttccgatacgagggagaa 526
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc 621
||||| ||||| | |||||| | ||||| || ||| |||| ||||||||||||
Sbjct: 527 gaggttaacacgattttggca-aatcagaggctaaaatactccatgagaagatc 579
>gb|CF228298.1|CF228298 PtaXM0011D12D1208 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 617
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 631 gcttacagtgatgatgagatcatcag 656
||||||||||||||||| ||||||||
Sbjct: 15 gcttacagtgatgatgaaatcatcag 40
>gb|CF234007.1|CF234007 PtaJXO1C9C0905 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 631 gcttacagtgatgatgagatcatcag 656
||||||||||||||||| ||||||||
Sbjct: 673 gcttacagtgatgatgaaatcatcag 698
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 97,017
Number of Sequences: 369679
Number of extensions: 97017
Number of successful extensions: 26053
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25941
Number of HSP's gapped (non-prelim): 87
length of query: 1277
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1258
effective length of database: 196,384,763
effective search space: 247052031854
effective search space used: 247052031854
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)