BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA934862.1|CA934862 MTU5TS.P24.H08 Aspen stem cDNA Libra... 44 0.009
gb|CX183969.1|CX183969 F06_45-30_12.ab1 leaf inoculated wit... 44 0.009
gb|BI070136.1|BI070136 C014P56U Populus strain T89 leaves P... 42 0.035
gb|DT506773.1|DT506773 WS02416.BR_H16 PTxD-ICC-N-A-14 Popul... 42 0.035
gb|CA823903.1|CA823903 R33C02 two-month-old roots from clon... 40 0.14
gb|CX173022.1|CX173022 F04_69-21_12.ab1 leaf inoculated wit... 40 0.14
gb|CX181933.1|CX181933 G12_45-94_14.ab1 leaf inoculated wit... 40 0.14
>gb|CA934862.1|CA934862 MTU5TS.P24.H08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 386
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tattattactactactactact 683
||||||||||||||||||||||
Sbjct: 374 tattattactactactactact 353
>gb|CX183969.1|CX183969 F06_45-30_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 600
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 662 tattattactactactactactcttc 687
|||||||| |||||||||||||||||
Sbjct: 82 tattattattactactactactcttc 107
>gb|BI070136.1|BI070136 C014P56U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 353
Score = 42.1 bits (21), Expect = 0.035
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 261 tcctcttcttcctcgtcctcctcct 285
|||||||||||||| ||||||||||
Sbjct: 160 tcctcttcttcctcctcctcctcct 136
>gb|DT506773.1|DT506773 WS02416.BR_H16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H16 5', mRNA sequence
Length = 812
Score = 42.1 bits (21), Expect = 0.035
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 263 ctcttcttcctcgtcctcctc 283
|||||||||||||||||||||
Sbjct: 173 ctcttcttcctcgtcctcctc 153
>gb|CA823903.1|CA823903 R33C02 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 261 tcctcttcttcctcgtcctc 280
||||||||||||||||||||
Sbjct: 263 tcctcttcttcctcgtcctc 244
>gb|CX173022.1|CX173022 F04_69-21_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 647
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 660 gctattattactactactactact 683
|||| |||||||||||||||||||
Sbjct: 157 gctactattactactactactact 134
>gb|CX181933.1|CX181933 G12_45-94_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 660 gctattattactactactactact 683
|||| |||||||||||||||||||
Sbjct: 146 gctactattactactactactact 123
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,798
Number of Sequences: 369679
Number of extensions: 86798
Number of successful extensions: 27122
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27101
Number of HSP's gapped (non-prelim): 18
length of query: 870
length of database: 203,408,664
effective HSP length: 19
effective length of query: 851
effective length of database: 196,384,763
effective search space: 167123433313
effective search space used: 167123433313
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)