BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485939.2.1
(530 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY129246.1| Populus x canescens putative MYB transcripti... 50 9e-005
gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Po... 46 0.001
gb|BU810395.1|BU810395 UL70B08 Populus leaf cDNA library Po... 44 0.005
gb|CV268363.1|CV268363 WS0205.B21_E10 PTxN-IB-N-A-11 Populu... 44 0.005
gb|DN500441.1|DN500441 UL50PD01.5pR Populus cold stressed l... 44 0.005
gb|CV267471.1|CV267471 WS02031.B21_N11 PTxN-IB-N-A-11 Popul... 42 0.021
gb|CF227420.1|CF227420 PtaD4G12B0804 Poplar cDNA library fr... 40 0.083
gb|CV275259.1|CV275259 WS0175.B21_O01 PTxD-NR-A-8 Populus t... 40 0.083
gb|BU831076.1|BU831076 T016H07 Populus apical shoot cDNA li... 38 0.33
gb|CA926682.1|CA926682 MTU6CR.P17.H10 Aspen root cDNA Libra... 38 0.33
gb|CA823180.1|CA823180 R21H10 two-month-old roots from clon... 38 0.33
gb|CA826111.1|CA826111 R72F12 two-month-old roots from clon... 38 0.33
gb|DN499003.1|DN499003 T016H07.5pR Populus shoot meristem c... 38 0.33
gb|DT505440.1|DT505440 WS01810.C21_O22 PTxD-IL-N-A-9 Populu... 38 0.33
gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Popul... 38 0.33
gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Popu... 38 0.33
>gb|AY129246.1| Populus x canescens putative MYB transcription factor (MYB) mRNA,
complete cds
Length = 1367
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 388 tgcctggcaggaccgacaacgaggtcaagaactactggaac 428
||||||| || ||||||||||| |||||||||||||||||
Sbjct: 378 tgcctggaagaaccgacaacgaaatcaagaactactggaac 418
>gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060B05 5', mRNA sequence
Length = 673
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 317 gacaacgagatcaagaactactggaac 343
>gb|BU810395.1|BU810395 UL70B08 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 360
Score = 44.1 bits (22), Expect = 0.005
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactaccttcggcc 289
||||| ||||||||| | ||||| ||||||||||||||
Sbjct: 255 aagagttgcaggctgagatggatgaactaccttcggcc 292
>gb|CV268363.1|CV268363 WS0205.B21_E10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_E10 3', mRNA sequence
Length = 775
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 397 ggaccgacaacgaggtcaagaactactggaactc 430
|||||||||||| |||||||||| | ||||||||
Sbjct: 514 ggaccgacaacgcggtcaagaaccattggaactc 481
>gb|DN500441.1|DN500441 UL50PD01.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL50PD01 5',
mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.005
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactaccttcggcc 289
||||| ||||||||| | ||||| ||||||||||||||
Sbjct: 282 aagagttgcaggctgagatggatgaactaccttcggcc 319
>gb|CV267471.1|CV267471 WS02031.B21_N11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_N11 3', mRNA sequence
Length = 988
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 249 ggcaagagctgcaggctgcggtggatcaactaccttcggcc 289
|||||||| |||||||| | ||||| ||||||||||||||
Sbjct: 777 ggcaagagttgcaggctaagatggatgaactaccttcggcc 737
>gb|CF227420.1|CF227420 PtaD4G12B0804 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.083
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 249 ggcaagagctgcaggctgcggtggatcaacta 280
|||||||||||||| || || |||||||||||
Sbjct: 283 ggcaagagctgcagacttcgttggatcaacta 314
>gb|CV275259.1|CV275259 WS0175.B21_O01 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_O01 3', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.083
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 396 aggaccgacaacgaggtcaagaactactggaa 427
||||| ||||| ||||| ||||||||||||||
Sbjct: 584 aggacagacaatgaggtgaagaactactggaa 553
>gb|BU831076.1|BU831076 T016H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 714
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 408 gaggtcaagaactactggaactc 430
||||| |||||||||||||||||
Sbjct: 401 gaggtgaagaactactggaactc 423
>gb|CA926682.1|CA926682 MTU6CR.P17.H10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 683
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 tcaagaactactggaactc 430
|||||||||||||||||||
Sbjct: 544 tcaagaactactggaactc 526
>gb|CA823180.1|CA823180 R21H10 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 534
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggat 274
|||||||||||||| ||||||||
Sbjct: 450 aagagctgcaggctccggtggat 472
>gb|CA826111.1|CA826111 R72F12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 548
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggat 274
|||||||||||||| ||||||||
Sbjct: 173 aagagctgcaggctccggtggat 195
>gb|DN499003.1|DN499003 T016H07.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T016H07 5', mRNA sequence
Length = 779
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 408 gaggtcaagaactactggaactc 430
||||| |||||||||||||||||
Sbjct: 401 gaggtgaagaactactggaactc 423
>gb|DT505440.1|DT505440 WS01810.C21_O22 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_O22 3', mRNA sequence
Length = 858
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 252 aagagctgcaggctgcggtggat 274
|||||||||||||| ||||||||
Sbjct: 849 aagagctgcaggctccggtggat 827
>gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 5', mRNA sequence
Length = 767
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 tcaagaactactggaactc 430
|||||||||||||||||||
Sbjct: 504 tcaagaactactggaactc 486
>gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 3', mRNA sequence
Length = 897
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 tcaagaactactggaactc 430
|||||||||||||||||||
Sbjct: 646 tcaagaactactggaactc 664
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,763
Number of Sequences: 369679
Number of extensions: 52763
Number of successful extensions: 16299
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16281
Number of HSP's gapped (non-prelim): 18
length of query: 530
length of database: 203,408,664
effective HSP length: 19
effective length of query: 511
effective length of database: 196,384,763
effective search space: 100352613893
effective search space used: 100352613893
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)