BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH4a02.xg.2.1
(526 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW290680.1|AW290680 NXNV044H05F Nsf Xylem Normal wood Ve... 50 9e-005
gb|CD027338.1|CD027338 NXNV044H05 Nsf Xylem Normal wood Ver... 50 9e-005
gb|DR090575.1|DR090575 RTAL1_16_B07.b1_A029 Roots plus adde... 50 9e-005
gb|DR090649.1|DR090649 RTAL1_16_B07.g1_A029 Roots plus adde... 50 9e-005
gb|DR169441.1|DR169441 RTPHOS1_32_A09.g1_A029 Roots minus p... 50 9e-005
gb|DR687165.1|DR687165 EST1077243 Normalized pine embryo li... 50 9e-005
gb|DT634133.1|DT634133 EST1149064 Normalized pine embryo li... 50 9e-005
gb|CO363686.1|CO363686 RTK1_11_F01.b1_A029 Roots minus pota... 48 4e-004
gb|CO366343.1|CO366343 RTK1_27_G06.b1_A029 Roots minus pota... 48 4e-004
gb|DR743131.1|DR743131 RTCU1_13_F08.g1_A029 Roots plus adde... 48 4e-004
gb|DR119509.1|DR119509 RTMG1_23_E07.g1_A029 Roots minus mag... 42 0.022
gb|BM493938.1|BM493938 NXLV_071_G06_F NXLV (Nsf Xylem Late ... 38 0.35
gb|DR049002.1|DR049002 RTBOR1_12_C12.g1_A029 Roots plus add... 38 0.35
>gb|AW290680.1|AW290680 NXNV044H05F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044H05 5', mRNA sequence
Length = 335
Score = 50.1 bits (25), Expect = 9e-005
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
||||||| ||||| ||||| ||||||| ||||| || || |||||||||||||| | |
Sbjct: 77 gaagctggttttcttattggtttagaaacaaacagtgatgtagttgagatggcaagctat 136
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
|| ||| | |||| || | ||| ||| || ||||||||||||||||| || ||| |
Sbjct: 137 gcaccattgtttgtcaatgttaataaccgcagatggaacccagatgctattgtatttgat 196
Query: 148 tcatggcagcactatgg 164
||||||||||| |||||
Sbjct: 197 tcatggcagcaatatgg 213
>gb|CD027338.1|CD027338 NXNV044H05 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044H05 5' similar to Arabidopsis thaliana sequence
At3g10740 putative alpha-L-arabinofuranosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 335
Score = 50.1 bits (25), Expect = 9e-005
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
||||||| ||||| ||||| ||||||| ||||| || || |||||||||||||| | |
Sbjct: 77 gaagctggttttcttattggtttagaaacaaacagtgatgtagttgagatggcaagctat 136
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
|| ||| | |||| || | ||| ||| || ||||||||||||||||| || ||| |
Sbjct: 137 gcaccattgtttgtcaatgttaataaccgcagatggaacccagatgctattgtatttgat 196
Query: 148 tcatggcagcactatgg 164
||||||||||| |||||
Sbjct: 197 tcatggcagcaatatgg 213
>gb|DR090575.1|DR090575 RTAL1_16_B07.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_B07_A029 3', mRNA sequence
Length = 778
Score = 50.1 bits (25), Expect = 9e-005
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
||||||| ||||| ||||| ||||||| ||||| || || |||||||||||||| | |
Sbjct: 37 gaagctggttttcttattgggttagaaacaaacagtgatgtagttgagatggcaagctat 96
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
|| ||| | |||| || | ||| ||| || ||||||||||||||||| || ||| |
Sbjct: 97 gcaccattgtttgtcaatgttaataaccgcagatggaacccagatgctattgtatttgat 156
Query: 148 tcatggcagcactatgg 164
||||||||||| |||||
Sbjct: 157 tcatggcagcaatatgg 173
>gb|DR090649.1|DR090649 RTAL1_16_B07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_B07_A029 5', mRNA sequence
Length = 746
Score = 50.1 bits (25), Expect = 9e-005
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
||||||| ||||| ||||| ||||||| ||||| || || |||||||||||||| | |
Sbjct: 36 gaagctggttttcttattgggttagaaacaaacagtgatgtagttgagatggcaagctat 95
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
|| ||| | |||| || | ||| ||| || ||||||||||||||||| || ||| |
Sbjct: 96 gcaccattgtttgtcaatgttaataaccgcagatggaacccagatgctattgtatttgat 155
Query: 148 tcatggcagcactatgg 164
||||||||||| |||||
Sbjct: 156 tcatggcagcaatatgg 172
>gb|DR169441.1|DR169441 RTPHOS1_32_A09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_32_A09_A029 5', mRNA sequence
Length = 653
Score = 50.1 bits (25), Expect = 9e-005
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
||||||| ||||| ||||| ||||||| ||||| || || |||||||||||||| | |
Sbjct: 485 gaagctggttttcttattgggttagaaacaaacagtgatgtagttgagatggcaagctat 544
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
|| ||| | |||| || | ||| ||| || ||||||||||||||||| || ||| |
Sbjct: 545 gcaccattgtttgtcaatgttaataaccgcagatggaacccagatgctattgtatttgat 604
Query: 148 tcatggcagcactatgg 164
||||||||||| |||||
Sbjct: 605 tcatggcagcaatatgg 621
>gb|DR687165.1|DR687165 EST1077243 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABO01 3' end, mRNA sequence
Length = 784
Score = 50.1 bits (25), Expect = 9e-005
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
||||||| ||||| ||||| ||||||| ||||| || || |||||||||||||| | |
Sbjct: 621 gaagctggttttcttattgggttagaaacaaacagtgatgtagttgagatggcaagctat 680
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
|| ||| | |||| || | ||| ||| || ||||||||||||||||| || ||| |
Sbjct: 681 gcaccattgtttgtcaatgttaataaccgcagatggaacccagatgctattgtatttgat 740
Query: 148 tcatggcagcactatgg 164
||||||||||| |||||
Sbjct: 741 tcatggcagcaatatgg 757
>gb|DT634133.1|DT634133 EST1149064 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG262 3' end, mRNA sequence
Length = 803
Score = 50.1 bits (25), Expect = 9e-005
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
||||||| ||||| ||||| ||||||| ||||| || || |||||||||||||| | |
Sbjct: 629 gaagctggttttcttattgggttagaaacaaacagtgatgtagttgagatggcaagctat 688
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
|| ||| | |||| || | ||| ||| || ||||||||||||||||| || ||| |
Sbjct: 689 gcaccattgtttgtcaatgttaataaccgcagatggaacccagatgctattgtatttgat 748
Query: 148 tcatggcagcactatgg 164
||||||||||| |||||
Sbjct: 749 tcatggcagcaatatgg 765
>gb|CO363686.1|CO363686 RTK1_11_F01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_F01_A029 3', mRNA sequence
Length = 836
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 121 tggaacccagatgctatagtctttaactcatggcagcactatgg 164
||||||||||||||||| || ||| | ||||||||||| |||||
Sbjct: 20 tggaacccagatgctattgtatttgattcatggcagcaatatgg 63
>gb|CO366343.1|CO366343 RTK1_27_G06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_G06_A029 3', mRNA sequence
Length = 884
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 121 tggaacccagatgctatagtctttaactcatggcagcactatgg 164
||||||||||||||||| || ||| | ||||||||||| |||||
Sbjct: 68 tggaacccagatgctattgtatttgattcatggcagcaatatgg 111
>gb|DR743131.1|DR743131 RTCU1_13_F08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_13_F08_A029 5', mRNA sequence
Length = 760
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 121 tggaacccagatgctatagtctttaactcatggcagcactatgg 164
||||||||||||||||| || ||| | ||||||||||| |||||
Sbjct: 29 tggaacccagatgctattgtatttgattcatggcagcaatatgg 72
>gb|DR119509.1|DR119509 RTMG1_23_E07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_E07_A029 5', mRNA sequence
Length = 619
Score = 42.1 bits (21), Expect = 0.022
Identities = 108/137 (78%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
||||||| ||||| ||||| ||||||| ||||| || || |||||||||||||| | |
Sbjct: 366 gaagctggttttcttattgggttagaaacaaacagtgatgtagttgagatggcaagctat 425
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
|| ||| | |||| || | ||| ||| || ||||||||||||||||| || ||| |
Sbjct: 426 gcaccattgtttgtcaatgttaataaccgcagatggaacccagatgctattgtatttgat 485
Query: 148 tcatggcagcactatgg 164
|||||||| || |||||
Sbjct: 486 tcatggcaacaatatgg 502
>gb|BM493938.1|BM493938 NXLV_071_G06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_071_G06 5', mRNA sequence
Length = 565
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 221 atccgtccactattcaact 239
|||||||||||||||||||
Sbjct: 373 atccgtccactattcaact 391
>gb|DR049002.1|DR049002 RTBOR1_12_C12.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_12_C12_A029 5', mRNA sequence
Length = 355
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 221 atccgtccactattcaact 239
|||||||||||||||||||
Sbjct: 115 atccgtccactattcaact 97
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,585
Number of Sequences: 355925
Number of extensions: 54585
Number of successful extensions: 14480
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14453
Number of HSP's gapped (non-prelim): 27
length of query: 526
length of database: 217,277,237
effective HSP length: 19
effective length of query: 507
effective length of database: 210,514,662
effective search space: 106730933634
effective search space used: 106730933634
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)