BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI813163.1|AI813163 23F8 Pine Lambda Zap Xylem library P... 56 2e-006
gb|AL750857.1|AL750857 AL750857 RS Pinus pinaster cDNA clon... 56 2e-006
gb|AL750877.1|AL750877 AL750877 RS Pinus pinaster cDNA clon... 56 2e-006
gb|AL750904.1|AL750904 AL750904 RS Pinus pinaster cDNA clon... 56 2e-006
gb|BX254191.1|BX254191 BX254191 Pinus pinaster differenciat... 56 2e-006
gb|BX254964.1|BX254964 BX254964 Pinus pinaster differenciat... 56 2e-006
gb|BE758631.1|BE758631 NXCI_069_D01_F NXCI (Nsf Xylem Compr... 56 2e-006
gb|BE762004.1|BE762004 NXCI_075_H03_F NXCI (Nsf Xylem Compr... 56 2e-006
gb|BF010535.1|BF010535 NXCI_085_E11_F NXCI (Nsf Xylem Compr... 56 2e-006
gb|BF186439.1|BF186439 NXCI_137_D10_F NXCI (Nsf Xylem Compr... 56 2e-006
gb|BF220773.1|BF220773 NXCI_150_F03_F NXCI (Nsf Xylem Compr... 56 2e-006
gb|BF517069.1|BF517069 NXSI_008_G09_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BF517615.1|BF517615 NXSI_026_H08_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BF778627.1|BF778627 NXSI_088_H02_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG040824.1|BG040824 NXSI_115_E10_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG275841.1|BG275841 NXSI_148_E05_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG318007.1|BG318007 NXPV_008_F08_F NXPV (Nsf Xylem Plani... 56 2e-006
gb|BQ635100.1|BQ635100 NXRV077_A06_F NXRV (Nsf Xylem Root w... 56 2e-006
gb|BQ655811.1|BQ655811 NXRV099_F03_F NXRV (Nsf Xylem Root w... 56 2e-006
gb|BQ696488.1|BQ696488 NXPV_041_H02_F NXPV (Nsf Xylem Plani... 56 2e-006
gb|BQ697039.1|BQ697039 NXPV_048_E07_F NXPV (Nsf Xylem Plani... 56 2e-006
gb|BQ697330.1|BQ697330 NXPV_055_H08_F NXPV (Nsf Xylem Plani... 56 2e-006
gb|BQ700446.1|BQ700446 NXRV105_G08_F NXRV (Nsf Xylem Root w... 56 2e-006
gb|BQ700447.1|BQ700447 NXRV105_G09_F NXRV (Nsf Xylem Root w... 56 2e-006
gb|BQ702490.1|BQ702490 NXSI_129_C03_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BQ703196.1|BQ703196 NXSI_137_G10_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|CD026313.1|CD026313 NXSI_143_F02_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|CF401783.1|CF401783 RTWW1_15_A10.b1_A015 Well-watered lo... 56 2e-006
gb|CF478512.1|CF478512 RTWW3_20_B12.g1_A022 Well-watered lo... 56 2e-006
gb|DR010816.1|DR010816 HEAT1_1_B04.g1_A029 Root at 37 C for... 56 2e-006
gb|DR070639.1|DR070639 RTDK1_14_E02.g1_A029 Roots, dark Pin... 56 2e-006
gb|DR080452.1|DR080452 RTFEPL1_22_F07.g1_A029 Roots plus ad... 56 2e-006
gb|DR090165.1|DR090165 RTAL1_13_D02.b1_A029 Roots plus adde... 56 2e-006
gb|DR165586.1|DR165586 RTPHOS1_6_C02.b1_A029 Roots minus ph... 56 2e-006
gb|DR167668.1|DR167668 RTPHOS1_20_G04.b1_A029 Roots minus p... 56 2e-006
gb|AI725265.1|AI725265 1131 PtIFG2 Pinus taeda cDNA clone 9... 50 9e-005
gb|BE996939.1|BE996939 NXCI_102_F08_F NXCI (Nsf Xylem Compr... 50 9e-005
gb|BF186003.1|BF186003 NXCI_132_A01_F NXCI (Nsf Xylem Compr... 50 9e-005
gb|BF186181.1|BF186181 NXCI_131_B08_F NXCI (Nsf Xylem Compr... 48 4e-004
gb|BF221065.1|BF221065 NXCI_162_H04_F NXCI (Nsf Xylem Compr... 48 4e-004
gb|BF221232.1|BF221232 NXCI_156_C07_F NXCI (Nsf Xylem Compr... 48 4e-004
gb|BF221245.1|BF221245 NXCI_156_D12_F NXCI (Nsf Xylem Compr... 48 4e-004
gb|BF518034.1|BF518034 NXSI_030_C04_F NXSI (Nsf Xylem Side ... 48 4e-004
gb|BF777250.1|BF777250 NXSI_066_H12_F NXSI (Nsf Xylem Side ... 48 4e-004
gb|BF778951.1|BF778951 NXSI_091_C09_F NXSI (Nsf Xylem Side ... 48 4e-004
gb|BG275330.1|BG275330 NXSI_142_E06_F NXSI (Nsf Xylem Side ... 48 4e-004
gb|BF610464.1|BF610464 NXSI_058_G07_F NXSI (Nsf Xylem Side ... 46 0.001
gb|BE582162.1|BE582162 NXCI_023_C10_F NXCI (Nsf Xylem Compr... 44 0.006
gb|BE762225.1|BE762225 NXCI_083_F12_F NXCI (Nsf Xylem Compr... 44 0.006
gb|BF010882.1|BF010882 NXCI_094_B11_F NXCI (Nsf Xylem Compr... 44 0.006
gb|BF220877.1|BF220877 NXCI_155_B04_F NXCI (Nsf Xylem Compr... 44 0.006
gb|BE643710.1|BE643710 NXCI_043_E02_F NXCI (Nsf Xylem Compr... 42 0.023
gb|CD017982.1|CD017982 NXCI_154_B11_F NXCI (Nsf Xylem Compr... 42 0.023
gb|CD016574.1|CD016574 NXCI_051_A06_F NXCI (Nsf Xylem Compr... 40 0.091
gb|CF386149.1|CF386149 RTDR1_8_G01.g1_A015 Loblolly pine ro... 40 0.091
gb|CF388037.1|CF388037 RTDR1_17_A01.g1_A015 Loblolly pine r... 40 0.091
gb|AI812443.1|AI812443 11B5 Pine Lambda Zap Xylem library P... 38 0.36
>gb|AI813163.1|AI813163 23F8 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 595
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 258 gggttctgggactaccattccttcatcaccgcggcggccc 297
>gb|AL750857.1|AL750857 AL750857 RS Pinus pinaster cDNA clone RS01B04 similar to CHITINASE,
mRNA sequence
Length = 396
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 259 gggttctgggactaccattccttcatcaccgcggcggccc 298
>gb|AL750877.1|AL750877 AL750877 RS Pinus pinaster cDNA clone RS01D04 similar to CHITINASE,
mRNA sequence
Length = 394
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 259 gggttctgggactaccattccttcatcaccgcggcggccc 298
>gb|AL750904.1|AL750904 AL750904 RS Pinus pinaster cDNA clone RS01G04 similar to CHITINASE,
mRNA sequence
Length = 394
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 259 gggttctgggactaccattccttcatcaccgcggcggccc 298
>gb|BX254191.1|BX254191 BX254191 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP094F06 similar to ENDOCHITINASE PRECURSOR,
mRNA sequence
Length = 675
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 321 gggttctgggactaccattccttcatcaccgcggcggccc 360
>gb|BX254964.1|BX254964 BX254964 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP108C07 similar to ENDOCHITINASE PRECURSOR,
mRNA sequence
Length = 664
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 312 gggttctgggactaccattccttcatcaccgcggcggccc 351
>gb|BE758631.1|BE758631 NXCI_069_D01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_069_D01 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 536
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 318 gggttctgggactaccattccttcatcaccgcggcggccc 357
>gb|BE762004.1|BE762004 NXCI_075_H03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_075_H03 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 392
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 290 gggttctgggactaccattccttcatcaccgcggcggccc 329
>gb|BF010535.1|BF010535 NXCI_085_E11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_085_E11 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 393
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 317 gggttctgggactaccattccttcatcaccgcggcggccc 356
>gb|BF186439.1|BF186439 NXCI_137_D10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_137_D10 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 383
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 206 gggttctgggactaccattccttcatcaccgcggcggccc 245
>gb|BF220773.1|BF220773 NXCI_150_F03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_150_F03 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 519
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 238 gggttctgggactaccattccttcatcaccgcggcggccc 277
>gb|BF517069.1|BF517069 NXSI_008_G09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_008_G09 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 499
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 289 gggttctgggactaccattccttcatcaccgcggcggccc 328
>gb|BF517615.1|BF517615 NXSI_026_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_026_H08 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 487
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 206 gggttctgggactaccattccttcatcaccgcggcggccc 245
>gb|BF778627.1|BF778627 NXSI_088_H02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_088_H02 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 479
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 269 gggttctgggactaccattccttcatcaccgcggcggccc 308
>gb|BG040824.1|BG040824 NXSI_115_E10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_115_E10 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 379
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 244 gggttctgggactaccattccttcatcaccgcggcggccc 283
>gb|BG275841.1|BG275841 NXSI_148_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_148_E05 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 332 gggttctgggactaccattccttcatcaccgcggcggccc 371
>gb|BG318007.1|BG318007 NXPV_008_F08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_008_F08 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 588
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 332 gggttctgggactaccattccttcatcaccgcggcggccc 371
>gb|BQ635100.1|BQ635100 NXRV077_A06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV077_A06 5' similar to Arabidopsis thaliana
sequence At3g16920 basic chitinase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 690
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 329 gggttctgggactaccattccttcatcaccgcggcggccc 368
>gb|BQ655811.1|BQ655811 NXRV099_F03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV099_F03 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 329 gggttctgggactaccattccttcatcaccgcggcggccc 368
>gb|BQ696488.1|BQ696488 NXPV_041_H02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_041_H02 5' similar to Arabidopsis
thaliana sequence At3g16920 basic chitinase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 650
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 332 gggttctgggactaccattccttcatcaccgcggcggccc 371
>gb|BQ697039.1|BQ697039 NXPV_048_E07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_048_E07 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 416
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 332 gggttctgggactaccattccttcatcaccgcggcggccc 371
>gb|BQ697330.1|BQ697330 NXPV_055_H08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_055_H08 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 391
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 136 gggttctgggactaccattccttcatcaccgcggcggccc 175
>gb|BQ700446.1|BQ700446 NXRV105_G08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_G08 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 560
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 340 gggttctgggactaccattccttcatcaccgcggcggccc 379
>gb|BQ700447.1|BQ700447 NXRV105_G09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_G09 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 575
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 332 gggttctgggactaccattccttcatcaccgcggcggccc 371
>gb|BQ702490.1|BQ702490 NXSI_129_C03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_C03 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 269 gggttctgggactaccattccttcatcaccgcggcggccc 308
>gb|BQ703196.1|BQ703196 NXSI_137_G10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_137_G10 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 238 gggttctgggactaccattccttcatcaccgcggcggccc 277
>gb|CD026313.1|CD026313 NXSI_143_F02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_143_F02 5' similar to Arabidopsis thaliana
sequence At3g16920 basic chitinase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 120
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 63 gggttctgggactaccattccttcatcaccgcggcggccc 102
>gb|CF401783.1|CF401783 RTWW1_15_A10.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_15_A10_A015 3', mRNA sequence
Length = 670
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 401 gggttctgggactaccattccttcatcaccgcggcggccc 362
>gb|CF478512.1|CF478512 RTWW3_20_B12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_B12_A022 5', mRNA sequence
Length = 746
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 279 gggttctgggactaccattccttcatcaccgcggcggccc 318
>gb|DR010816.1|DR010816 HEAT1_1_B04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_1_B04_A029 5', mRNA sequence
Length = 794
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 309 gggttctgggactaccattccttcatcaccgcggcggccc 348
>gb|DR070639.1|DR070639 RTDK1_14_E02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_14_E02_A029 5', mRNA sequence
Length = 870
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 326 gggttctgggactaccattccttcatcaccgcggcggccc 365
>gb|DR080452.1|DR080452 RTFEPL1_22_F07.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_22_F07_A029 5', mRNA sequence
Length = 754
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 306 gggttctgggactaccattccttcatcaccgcggcggccc 345
>gb|DR090165.1|DR090165 RTAL1_13_D02.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_13_D02_A029 3', mRNA sequence
Length = 899
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 627 gggttctgggactaccattccttcatcaccgcggcggccc 588
>gb|DR165586.1|DR165586 RTPHOS1_6_C02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_6_C02_A029 3', mRNA sequence
Length = 946
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 839 gggttctgggactaccattccttcatcaccgcggcggccc 800
>gb|DR167668.1|DR167668 RTPHOS1_20_G04.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_G04_A029 3', mRNA sequence
Length = 769
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcggccc 470
||||||||||||||||| ||||||||||||| |||||||
Sbjct: 704 gggttctgggactaccattccttcatcaccgcggcggccc 665
>gb|AI725265.1|AI725265 1131 PtIFG2 Pinus taeda cDNA clone 9175r, mRNA sequence
Length = 611
Score = 50.1 bits (25), Expect = 9e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcgg 467
||||||||||||||||| ||||||||||||| ||||
Sbjct: 273 gggttctgggactaccattccttcatcaccgcggcgg 309
>gb|BE996939.1|BE996939 NXCI_102_F08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_102_F08 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 50.1 bits (25), Expect = 9e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgccgcgg 467
||||||||||||||||| ||||||||||||| ||||
Sbjct: 238 gggttctgggactaccattccttcatcaccgcggcgg 274
>gb|BF186003.1|BF186003 NXCI_132_A01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_132_A01 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 391
Score = 50.1 bits (25), Expect = 9e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 434 ttctgggactaccaggccttcatcaccgccgcggccc 470
|||||||||||||| ||||||||||||| |||||||
Sbjct: 310 ttctgggactaccattccttcatcaccgcggcggccc 346
>gb|BF186181.1|BF186181 NXCI_131_B08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_131_B08 5' similar to Arabidopsis
thaliana sequence At3g16920 basic chitinase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 215
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgc 462
||||||||||||||||| |||||||||||||
Sbjct: 159 gggttctgggactaccattccttcatcaccgc 190
>gb|BF221065.1|BF221065 NXCI_162_H04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_H04 5' similar to Arabidopsis
thaliana sequence At3g16920 basic chitinase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 267
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgc 462
||||||||||||||||| |||||||||||||
Sbjct: 235 gggttctgggactaccattccttcatcaccgc 266
>gb|BF221232.1|BF221232 NXCI_156_C07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_156_C07 5' similar to Arabidopsis
thaliana sequence At3g16920 basic chitinase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 399
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgc 462
||||||||||||||||| |||||||||||||
Sbjct: 332 gggttctgggactaccattccttcatcaccgc 363
>gb|BF221245.1|BF221245 NXCI_156_D12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_156_D12 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 365
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgc 462
||||||||||||||||| |||||||||||||
Sbjct: 235 gggttctgggactaccattccttcatcaccgc 266
>gb|BF518034.1|BF518034 NXSI_030_C04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_030_C04 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 416
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgc 462
||||||||||||||||| |||||||||||||
Sbjct: 332 gggttctgggactaccattccttcatcaccgc 363
>gb|BF777250.1|BF777250 NXSI_066_H12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_066_H12 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 420
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgc 462
||||||||||||||||| |||||||||||||
Sbjct: 315 gggttctgggactaccattccttcatcaccgc 346
>gb|BF778951.1|BF778951 NXSI_091_C09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_091_C09 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 440
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgc 462
||||||||||||||||| |||||||||||||
Sbjct: 292 gggttctgggactaccattccttcatcaccgc 323
>gb|BG275330.1|BG275330 NXSI_142_E06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_142_E06 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 456
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcaccgc 462
||||||||||||||||| |||||||||||||
Sbjct: 238 gggttctgggactaccattccttcatcaccgc 269
>gb|BF610464.1|BF610464 NXSI_058_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_058_G07 5' similar to Arabidopsis thaliana
sequence At3g16920 basic chitinase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 364
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 432 ggttctgggactaccaggccttcatcaccgc 462
|||||||||||||||| |||||||||||||
Sbjct: 333 ggttctgggactaccattccttcatcaccgc 363
>gb|BE582162.1|BE582162 NXCI_023_C10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_023_C10 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 315
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 431 gggttctgggactaccaggccttcatcacc 460
||||||||||||||||| |||||||||||
Sbjct: 235 gggttctgggactaccattccttcatcacc 264
>gb|BE762225.1|BE762225 NXCI_083_F12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_083_F12 5' similar to Arabidopsis
thaliana sequence At3g16920 basic chitinase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 379
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 433 gttctgggactaccaggccttcatcaccgc 462
||||||||||||||| |||||||||||||
Sbjct: 322 gttctgggactaccattccttcatcaccgc 351
>gb|BF010882.1|BF010882 NXCI_094_B11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_094_B11 5' similar to Arabidopsis
thaliana sequence At3g16920 basic chitinase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 266
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 433 gttctgggactaccaggccttcatcaccgc 462
||||||||||||||| |||||||||||||
Sbjct: 237 gttctgggactaccattccttcatcaccgc 266
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,896
Number of Sequences: 355925
Number of extensions: 62896
Number of successful extensions: 15747
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15690
Number of HSP's gapped (non-prelim): 57
length of query: 542
length of database: 217,277,237
effective HSP length: 19
effective length of query: 523
effective length of database: 210,514,662
effective search space: 110099168226
effective search space used: 110099168226
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)