BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696537.2.1
(592 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX251301.1|BX251301 BX251301 Pinus pinaster differenciat... 40 0.100
gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compr... 40 0.100
gb|CF390389.1|CF390389 RTDR2_19_E10.b1_A021 Loblolly pine r... 40 0.100
gb|CF390785.1|CF390785 RTDR2_17_H10.g1_A021 Loblolly pine r... 40 0.100
gb|CO162341.1|CO162341 FLD1_34_E09.g1_A029 Root flooded Pin... 40 0.100
gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pin... 40 0.100
gb|CO162943.1|CO162943 FLD1_38_A12.g1_A029 Root flooded Pin... 40 0.100
gb|CO164009.1|CO164009 FLD1_45_E07.b1_A029 Root flooded Pin... 40 0.100
gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pin... 40 0.100
gb|CO164159.1|CO164159 FLD1_46_E06.b1_A029 Root flooded Pin... 40 0.100
gb|CO164233.1|CO164233 FLD1_46_E06.g1_A029 Root flooded Pin... 40 0.100
gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus... 40 0.100
gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus... 40 0.100
gb|CX714248.1|CX714248 RTPQ1_19_F08.g1_A032 Roots treated w... 40 0.100
gb|DR024599.1|DR024599 STRS1_66_C04.b1_A034 Shoot tip pitch... 40 0.100
gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch... 40 0.100
gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added... 40 0.100
gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added... 40 0.100
gb|DR691682.1|DR691682 EST1081769 Normalized pine embryo li... 40 0.100
gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo li... 40 0.100
>gb|BX251301.1|BX251301 BX251301 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP047H07, mRNA sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 626 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 583
>gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_D12 5' similar to Arabidopsis
thaliana sequence At5g22920 PGPD14 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 299 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 256
>gb|CF390389.1|CF390389 RTDR2_19_E10.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_E10_A021 3', mRNA
sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 58 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 101
>gb|CF390785.1|CF390785 RTDR2_17_H10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_H10_A021 5', mRNA
sequence
Length = 798
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 545 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 502
>gb|CO162341.1|CO162341 FLD1_34_E09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_E09_A029 5', mRNA sequence
Length = 858
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 681 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 638
>gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A12_A029 3', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 177 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 134
>gb|CO162943.1|CO162943 FLD1_38_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A12_A029 5', mRNA sequence
Length = 804
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 667 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 624
>gb|CO164009.1|CO164009 FLD1_45_E07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_E07_A029 3', mRNA sequence
Length = 909
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 234 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 277
>gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_E07_A029 5', mRNA sequence
Length = 886
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 709 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 752
>gb|CO164159.1|CO164159 FLD1_46_E06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_E06_A029 3', mRNA sequence
Length = 911
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 236 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 279
>gb|CO164233.1|CO164233 FLD1_46_E06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_E06_A029 5', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 707 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 750
>gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_C03_A029 5', mRNA sequence
Length = 699
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 419 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 376
>gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_H01_A029 3', mRNA sequence
Length = 753
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 514 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 557
>gb|CX714248.1|CX714248 RTPQ1_19_F08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_19_F08_A032 5', mRNA sequence
Length = 693
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 567 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 524
>gb|DR024599.1|DR024599 STRS1_66_C04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C04_A034 3', mRNA sequence
Length = 762
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 97 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 54
>gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C04_A034 5', mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 253 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 210
>gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 3', mRNA sequence
Length = 844
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 206 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 163
>gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 5', mRNA sequence
Length = 749
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 375 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 332
>gb|DR691682.1|DR691682 EST1081769 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADB54 3' end, mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 479 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 436
>gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX65 3' end, mRNA sequence
Length = 844
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 548 gagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||||||||| |||||| | || |||||||||||||| |||||
Sbjct: 442 gagtcgaataaatactcaaaacacacagggcagttgtggtgcat 399
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,513
Number of Sequences: 355925
Number of extensions: 56513
Number of successful extensions: 15021
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14992
Number of HSP's gapped (non-prelim): 29
length of query: 592
length of database: 217,277,237
effective HSP length: 19
effective length of query: 573
effective length of database: 210,514,662
effective search space: 120624901326
effective search space used: 120624901326
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)