BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336950.2.1
(645 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO159687.1|CO159687 FLD1_15_D08.b1_A029 Root flooded Pin... 38 0.43
gb|AY974152.1| Pinus resinosa p-396-2 mRNA, partial sequence 38 0.43
>gb|CO159687.1|CO159687 FLD1_15_D08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_D08_A029 3', mRNA sequence
Length = 706
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7 agagcttgttagtgaaact 25
|||||||||||||||||||
Sbjct: 181 agagcttgttagtgaaact 199
>gb|AY974152.1| Pinus resinosa p-396-2 mRNA, partial sequence
Length = 310
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 276 ctccagcttcaaaccctct 294
|||||||||||||||||||
Sbjct: 163 ctccagcttcaaaccctct 145
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,291
Number of Sequences: 355925
Number of extensions: 73291
Number of successful extensions: 18888
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18886
Number of HSP's gapped (non-prelim): 2
length of query: 645
length of database: 217,277,237
effective HSP length: 19
effective length of query: 626
effective length of database: 210,514,662
effective search space: 131782178412
effective search space used: 131782178412
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)