BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3197099.2.1
(631 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9... 70 1e-010
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 70 1e-010
gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine ro... 70 1e-010
gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine r... 70 1e-010
gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control P... 70 1e-010
gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clon... 70 1e-010
gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus pota... 70 1e-010
gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus pota... 70 1e-010
gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus pota... 70 1e-010
gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus pota... 70 1e-010
gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus pota... 70 1e-010
gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus pota... 70 1e-010
gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus pota... 70 1e-010
gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch... 70 1e-010
gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch... 70 1e-010
gb|DR053203.1|DR053203 RTCA1_9_D06.g1_A029 Roots minus calc... 70 1e-010
gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus adde... 70 1e-010
gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus adde... 70 1e-010
gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus ph... 70 1e-010
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 68 5e-010
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 68 5e-010
gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Plani... 64 7e-009
gb|DR177283.1|DR177283 RTMNUT1_4_H01.b1_A029 Roots minus mi... 54 7e-006
gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response R... 52 3e-005
gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clon... 40 0.11
gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pin... 40 0.11
gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pin... 40 0.11
gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch... 40 0.11
gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus ni... 40 0.11
gb|DR093250.1|DR093250 STRR1_7_C02.b1_A033 Stem Response Re... 38 0.42
>gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9201r, mRNA sequence
Length = 580
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 254 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 195
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 194 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 148
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 216 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 157
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 156 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 110
>gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 3', mRNA
sequence
Length = 645
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 165 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 106
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 105 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 59
>gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_E12_A022 5', mRNA
sequence
Length = 748
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 712 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 653
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 652 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 606
>gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D08_A029 5', mRNA sequence
Length = 797
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 673 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 614
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 613 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 567
>gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clone RS34D06, mRNA sequence
Length = 646
Score = 69.9 bits (35), Expect = 1e-010
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| |||||||||
Sbjct: 463 gctgtgaatttgttttcatcccaaagnacatgataatgggcaggcctactagttccctgg 404
Query: 585 attccagcatgactacagaggt 606
|| |||||||| || |||||||
Sbjct: 403 ataccagcatggctgcagaggt 382
>gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_E06_A029 3', mRNA sequence
Length = 900
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 337 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 278
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 277 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 231
>gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 3', mRNA sequence
Length = 755
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 187 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 128
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 127 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 81
>gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 5', mRNA sequence
Length = 845
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 438 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 379
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 378 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 332
>gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 3', mRNA sequence
Length = 871
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 292 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 233
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 232 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 186
>gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 5', mRNA sequence
Length = 831
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 609 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 550
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 549 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 503
>gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 3', mRNA sequence
Length = 823
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 249 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 190
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 189 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 143
>gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 5', mRNA sequence
Length = 779
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 746 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 687
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 686 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 640
>gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 3', mRNA sequence
Length = 759
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 196 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 137
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 136 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 90
>gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 5', mRNA sequence
Length = 626
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 381 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 322
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 321 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 275
>gb|DR053203.1|DR053203 RTCA1_9_D06.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_D06_A029 5', mRNA sequence
Length = 708
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 704 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 645
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 644 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 598
>gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 3', mRNA sequence
Length = 741
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 173 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 114
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 113 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 67
>gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 5', mRNA sequence
Length = 796
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 415 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 356
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 355 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 309
>gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_E04_A029 5', mRNA sequence
Length = 924
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 571 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 512
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|| |||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 511 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggca 465
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 67.9 bits (34), Expect = 5e-010
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 540 tcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagcatgacta 599
|||||||| || ||||| | ||||| ||||| || |||||||| || |||||||||||
Sbjct: 319 tcatcccacagaacatgataatgagctggcctgcttgttccctgaataccagcatgactg 260
Query: 600 cagaggtagaaatcaaactccgttgg 625
|| ||||||||||||||||| |||||
Sbjct: 259 caaaggtagaaatcaaactctgttgg 234
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 67.9 bits (34), Expect = 5e-010
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 540 tcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagcatgacta 599
|||||||| || ||||| | ||||| ||||| || |||||||| || |||||||||||
Sbjct: 278 tcatcccacagaacatgataatgagctggcctgcttgttccctgaataccagcatgactg 219
Query: 600 cagaggtagaaatcaaactccgttgg 625
|| ||||||||||||||||| |||||
Sbjct: 218 caaaggtagaaatcaaactcggttgg 193
>gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_C07 5' similar to Arabidopsis
thaliana sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 332
Score = 63.9 bits (32), Expect = 7e-009
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 97 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 38
Query: 585 attccagcatgactacagaggtagaaatcaaa 616
|| |||||||| || |||||||| || |||||
Sbjct: 37 ataccagcatggctgcagaggtaaaagtcaaa 6
>gb|DR177283.1|DR177283 RTMNUT1_4_H01.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_H01_A029 3', mRNA sequence
Length = 637
Score = 54.0 bits (27), Expect = 7e-006
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| || ||||| | || ||||||||||| ||||||||
Sbjct: 76 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 17
Query: 585 attccagcatg 595
|| ||||||||
Sbjct: 16 ataccagcatg 6
>gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 5', mRNA sequence
Length = 870
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgg 625
||||||||||| || ||||||||||||||||| |||||
Sbjct: 867 ccagcatgactgcaaaggtagaaatcaaactctgttgg 830
>gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clone RS66B04, mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.11
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 537 ttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagcatga 596
||||||||| ||| |||| | ||||||| ||| |||| || |||| |||||||||||
Sbjct: 302 ttctcatcctggagtacattgtagtgagctggcttactagtgccctttattccagcatgg 243
Query: 597 ctacagag 604
||||||||
Sbjct: 242 ctacagag 235
>gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 3', mRNA sequence
Length = 818
Score = 40.1 bits (20), Expect = 0.11
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 537 ttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagcatga 596
||||||||| ||| |||| | ||||||| ||| |||| || |||| |||||||||||
Sbjct: 248 ttctcatcctggagtacattgtagtgagctggcttactagtgccctttattccagcatgg 189
Query: 597 ctacagag 604
||||||||
Sbjct: 188 ctacagag 181
>gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 5', mRNA sequence
Length = 844
Score = 40.1 bits (20), Expect = 0.11
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 537 ttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagcatga 596
||||||||| ||| |||| | ||||||| ||| |||| || |||| |||||||||||
Sbjct: 531 ttctcatcctggagtacattgtagtgagctggcttactagtgccctttattccagcatgg 472
Query: 597 ctacagag 604
||||||||
Sbjct: 471 ctacagag 464
>gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_D07_A034 5', mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.11
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 537 ttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagcatga 596
||||||||| ||| |||| | ||||||| ||| |||| || |||| |||||||||||
Sbjct: 331 ttctcatcctggagtacattgtagtgagctggcttactagtgccctttattccagcatgg 272
Query: 597 ctacagag 604
||||||||
Sbjct: 271 ctacagag 264
>gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_H03_A029 5', mRNA sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.11
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 537 ttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagcatga 596
||||||||| ||| |||| | ||||||| ||| |||| || |||| |||||||||||
Sbjct: 466 ttctcatcctggagtacattgtagtgagctggcttactagtgccctttattccagcatgg 525
Query: 597 ctacagag 604
||||||||
Sbjct: 526 ctacagag 533
>gb|DR093250.1|DR093250 STRR1_7_C02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_C02_A033 3', mRNA sequence
Length = 864
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 308 caccttctccttcacagca 326
|||||||||||||||||||
Sbjct: 693 caccttctccttcacagca 711
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,837
Number of Sequences: 355925
Number of extensions: 70837
Number of successful extensions: 21308
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21231
Number of HSP's gapped (non-prelim): 77
length of query: 631
length of database: 217,277,237
effective HSP length: 19
effective length of query: 612
effective length of database: 210,514,662
effective search space: 128834973144
effective search space used: 128834973144
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)