BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO197922.1|CO197922 GEO1_10_C03.b1_A029 Root gravitropis... 40 0.10
gb|DR050886.1|DR050886 RTBOR1_26_G03.b1_A029 Roots plus add... 40 0.10
gb|DR095033.1|DR095033 STRR1_18_H06.b1_A033 Stem Response R... 40 0.10
>gb|CO197922.1|CO197922 GEO1_10_C03.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_10_C03_A029 3', mRNA sequence
Length = 693
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 250 gacgcggcggcagatggtga 269
||||||||||||||||||||
Sbjct: 3 gacgcggcggcagatggtga 22
>gb|DR050886.1|DR050886 RTBOR1_26_G03.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_26_G03_A029 3', mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 250 gacgcggcggcagatggtga 269
||||||||||||||||||||
Sbjct: 3 gacgcggcggcagatggtga 22
>gb|DR095033.1|DR095033 STRR1_18_H06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_H06_A033 3', mRNA sequence
Length = 840
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 250 gacgcggcggcagatggtga 269
||||||||||||||||||||
Sbjct: 153 gacgcggcggcagatggtga 172
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,032
Number of Sequences: 355925
Number of extensions: 50032
Number of successful extensions: 16205
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16202
Number of HSP's gapped (non-prelim): 3
length of query: 617
length of database: 217,277,237
effective HSP length: 19
effective length of query: 598
effective length of database: 210,514,662
effective search space: 125887767876
effective search space used: 125887767876
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)