BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2169937.2.1
(891 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX680853.1|BX680853 BX680853 RS Pinus pinaster cDNA clon... 44 0.010
gb|BX681424.1|BX681424 BX681424 RS Pinus pinaster cDNA clon... 44 0.010
gb|CO167773.1|CO167773 FLD1_71_C06.b1_A029 Root flooded Pin... 44 0.010
gb|CO167843.1|CO167843 FLD1_71_C06.g1_A029 Root flooded Pin... 44 0.010
gb|CF397439.1|CF397439 RTDS3_3_A01.g1_A022 Drought-stressed... 42 0.038
gb|CF663618.1|CF663618 RTCNT1_4_C08.b1_A029 Root control Pi... 42 0.038
gb|CF668352.1|CF668352 RTCNT1_36_A11.b1_A029 Root control P... 42 0.038
gb|CF672949.1|CF672949 RTCNT1_75_C02.b1_A029 Root control P... 42 0.038
gb|CV035052.1|CV035052 RTNACL1_13_G04.b1_A029 Roots plus ad... 42 0.038
gb|CV035132.1|CV035132 RTNACL1_13_G04.g1_A029 Roots plus ad... 42 0.038
gb|CX649353.1|CX649353 COLD1_34_D09.g1_A029 Root cold Pinus... 42 0.038
gb|CX713337.1|CX713337 RTPQ1_8_B05.g1_A032 Roots treated wi... 42 0.038
gb|CX714920.1|CX714920 RTPQ1_28_F05.b1_A032 Roots treated w... 42 0.038
gb|DR010952.1|DR010952 HEAT1_2_H03.b1_A029 Root at 37 C for... 42 0.038
gb|DR014197.1|DR014197 HEAT1_24_A12.b1_A029 Root at 37 C fo... 42 0.038
gb|DR050276.1|DR050276 RTBOR1_22_H12.b1_A029 Roots plus add... 42 0.038
gb|DR054531.1|DR054531 RTCA1_18_A02.b1_A029 Roots minus cal... 42 0.038
gb|DR120739.1|DR120739 RTMG1_31_C12.g1_A029 Roots minus mag... 42 0.038
gb|DR160436.1|DR160436 RTFE1_6_A07.b1_A029 Roots minus iron... 42 0.038
gb|DR160510.1|DR160510 RTFE1_6_A07.g1_A029 Roots minus iron... 42 0.038
gb|DR162917.1|DR162917 RTFE1_22_G05.b1_A029 Roots minus iro... 42 0.038
gb|DR744292.1|DR744292 RTCU1_21_B03.g1_A029 Roots plus adde... 42 0.038
gb|CF393566.1|CF393566 RTDR3_15_E10.b1_A022 Loblolly pine r... 40 0.15
gb|CF393702.1|CF393702 RTDR3_15_E10.g1_A022 Loblolly pine r... 40 0.15
gb|CF470322.1|CF470322 RTDS1_18_A04.g1_A015 Drought-stresse... 40 0.15
gb|CF667351.1|CF667351 RTCNT1_29_D12.g1_A029 Root control P... 40 0.15
gb|CO366654.1|CO366654 RTK1_29_E12.b1_A029 Roots minus pota... 40 0.15
gb|CX649431.1|CX649431 COLD1_35_F02.b1_A029 Root cold Pinus... 40 0.15
gb|CX649514.1|CX649514 COLD1_35_F02.g1_A029 Root cold Pinus... 40 0.15
gb|DR079114.1|DR079114 RTFEPL1_9_E02.b1_A029 Roots plus add... 40 0.15
gb|DR180090.1|DR180090 RTMNUT1_26_H11.b1_A029 Roots minus m... 40 0.15
gb|DR180171.1|DR180171 RTMNUT1_26_H11.g1_A029 Roots minus m... 40 0.15
gb|DR385326.1|DR385326 RTHG1_8_B02.b1_A029 Roots plus added... 40 0.15
gb|DR742640.1|DR742640 RTCU1_5_C05.g2_A029 Roots plus added... 40 0.15
>gb|BX680853.1|BX680853 BX680853 RS Pinus pinaster cDNA clone RS49F03, mRNA sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 382 ctacaacaacctgttcgacgccatggtgga 411
|||||||||||||||||| ||| |||||||
Sbjct: 280 ctacaacaacctgttcgatgccttggtgga 309
>gb|BX681424.1|BX681424 BX681424 RS Pinus pinaster cDNA clone RS59A09, mRNA sequence
Length = 563
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 382 ctacaacaacctgttcgacgccatggtgga 411
|||||||||||||||||| ||| |||||||
Sbjct: 444 ctacaacaacctgttcgatgccttggtgga 473
>gb|CO167773.1|CO167773 FLD1_71_C06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_71_C06_A029 3', mRNA sequence
Length = 837
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 382 ctacaacaacctgttcgacgccatggtgga 411
|||||||||||||||||| ||| |||||||
Sbjct: 367 ctacaacaacctgttcgatgccttggtgga 396
>gb|CO167843.1|CO167843 FLD1_71_C06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_71_C06_A029 5', mRNA sequence
Length = 809
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 382 ctacaacaacctgttcgacgccatggtgga 411
|||||||||||||||||| ||| |||||||
Sbjct: 640 ctacaacaacctgttcgatgccttggtgga 669
>gb|CF397439.1|CF397439 RTDS3_3_A01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_A01_A022 5', mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 214 tcttcgctattttcaacgagaaccagaag 186
>gb|CF663618.1|CF663618 RTCNT1_4_C08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_C08_A029 3', mRNA sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 404 tcttcgctattttcaacgagaaccagaag 432
>gb|CF668352.1|CF668352 RTCNT1_36_A11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_A11_A029 3', mRNA sequence
Length = 725
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 446 tcttcgctattttcaacgagaaccagaag 474
>gb|CF672949.1|CF672949 RTCNT1_75_C02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_C02_A029 3', mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 373 tcttcgctattttcaacgagaaccagaag 401
>gb|CV035052.1|CV035052 RTNACL1_13_G04.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G04_A029 3', mRNA sequence
Length = 564
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 286 tcttcgctattttcaacgagaaccagaag 314
>gb|CV035132.1|CV035132 RTNACL1_13_G04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G04_A029 5', mRNA sequence
Length = 563
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 266 tcttcgctattttcaacgagaaccagaag 294
>gb|CX649353.1|CX649353 COLD1_34_D09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_D09_A029 5', mRNA sequence
Length = 641
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 550 tcttcgctattttcaacgagaaccagaag 578
>gb|CX713337.1|CX713337 RTPQ1_8_B05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B05_A032 5', mRNA sequence
Length = 616
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 249 tcttcgctattttcaacgagaaccagaag 221
>gb|CX714920.1|CX714920 RTPQ1_28_F05.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_28_F05_A032 3', mRNA sequence
Length = 466
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 247 tcttcgctattttcaacgagaaccagaag 275
>gb|DR010952.1|DR010952 HEAT1_2_H03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_2_H03_A029 3', mRNA sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 403 tcttcgctattttcaacgagaaccagaag 431
>gb|DR014197.1|DR014197 HEAT1_24_A12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A12_A029 3', mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 318 tcttcgctattttcaacgagaaccagaag 346
>gb|DR050276.1|DR050276 RTBOR1_22_H12.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_22_H12_A029 3', mRNA sequence
Length = 834
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 602 tcttcgctattttcaacgagaaccagaag 630
>gb|DR054531.1|DR054531 RTCA1_18_A02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_A02_A029 3', mRNA sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 401 tcttcgctattttcaacgagaaccagaag 429
>gb|DR120739.1|DR120739 RTMG1_31_C12.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_31_C12_A029 5', mRNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 256 tcttcgctattttcaacgagaaccagaag 228
>gb|DR160436.1|DR160436 RTFE1_6_A07.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_6_A07_A029 3', mRNA sequence
Length = 873
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 664 tcttcgctattttcaacgagaaccagaag 692
>gb|DR160510.1|DR160510 RTFE1_6_A07.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_6_A07_A029 5', mRNA sequence
Length = 921
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 716 tcttcgctattttcaacgagaaccagaag 744
>gb|DR162917.1|DR162917 RTFE1_22_G05.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_22_G05_A029 3', mRNA sequence
Length = 263
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 47 tcttcgctattttcaacgagaaccagaag 75
>gb|DR744292.1|DR744292 RTCU1_21_B03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_B03_A029 5', mRNA sequence
Length = 794
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 597 tcttcgccatgttcaacgagaaccagaag 625
||||||| || ||||||||||||||||||
Sbjct: 186 tcttcgctattttcaacgagaaccagaag 158
>gb|CF393566.1|CF393566 RTDR3_15_E10.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_15_E10_A022 3', mRNA
sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 75 aactacaacaacttgttcgatgccatgg 102
>gb|CF393702.1|CF393702 RTDR3_15_E10.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_15_E10_A022 5', mRNA
sequence
Length = 841
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 733 aactacaacaacttgttcgatgccatgg 760
>gb|CF470322.1|CF470322 RTDS1_18_A04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_18_A04_A015 5', mRNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 722 aactacaacaacttgttcgatgccatgg 749
>gb|CF667351.1|CF667351 RTCNT1_29_D12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_D12_A029 5', mRNA sequence
Length = 811
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 697 aactacaacaacttgttcgatgccatgg 724
>gb|CO366654.1|CO366654 RTK1_29_E12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_E12_A029 3', mRNA sequence
Length = 809
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 293 aactacaacaacttgttcgatgccatgg 320
>gb|CX649431.1|CX649431 COLD1_35_F02.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_F02_A029 3', mRNA sequence
Length = 780
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 264 aactacaacaacttgttcgatgccatgg 291
>gb|CX649514.1|CX649514 COLD1_35_F02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_F02_A029 5', mRNA sequence
Length = 730
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 693 aactacaacaacttgttcgatgccatgg 720
>gb|DR079114.1|DR079114 RTFEPL1_9_E02.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_E02_A029 3', mRNA sequence
Length = 799
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 269 aactacaacaacttgttcgatgccatgg 296
>gb|DR180090.1|DR180090 RTMNUT1_26_H11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_26_H11_A029 3', mRNA sequence
Length = 822
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 294 aactacaacaacttgttcgatgccatgg 321
>gb|DR180171.1|DR180171 RTMNUT1_26_H11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_26_H11_A029 5', mRNA sequence
Length = 810
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 518 aactacaacaacttgttcgatgccatgg 545
>gb|DR385326.1|DR385326 RTHG1_8_B02.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_B02_A029 3', mRNA sequence
Length = 821
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 113 aactacaacaacttgttcgatgccatgg 86
>gb|DR742640.1|DR742640 RTCU1_5_C05.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_5_C05_A029 5', mRNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 aactacaacaacctgttcgacgccatgg 407
|||||||||||| ||||||| |||||||
Sbjct: 511 aactacaacaacttgttcgatgccatgg 538
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,924
Number of Sequences: 355925
Number of extensions: 62924
Number of successful extensions: 19776
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19731
Number of HSP's gapped (non-prelim): 45
length of query: 891
length of database: 217,277,237
effective HSP length: 19
effective length of query: 872
effective length of database: 210,514,662
effective search space: 183568785264
effective search space used: 183568785264
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)