BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.3
(885 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF277846.2|AF277846 Pinus taeda clone 51k4f microsatelli... 42 0.038
gb|CR394451.1|CR394451 CR394451 RN Pinus pinaster cDNA clon... 40 0.15
>gb|AF277846.2|AF277846 Pinus taeda clone 51k4f microsatellite PtTX3002 sequence
Length = 386
Score = 42.1 bits (21), Expect = 0.038
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggagg 614
||||||||||||||||| |||||||
Sbjct: 291 ggaggaggagaagaggaggaggagg 315
>gb|CR394451.1|CR394451 CR394451 RN Pinus pinaster cDNA clone RN79D09, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 593 ggaggagaagaggaagaggaggaa 616
|||| |||||||||||||||||||
Sbjct: 206 ggagaagaagaggaagaggaggaa 229
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 118,087
Number of Sequences: 355925
Number of extensions: 118087
Number of successful extensions: 39928
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39925
Number of HSP's gapped (non-prelim): 3
length of query: 885
length of database: 217,277,237
effective HSP length: 19
effective length of query: 866
effective length of database: 210,514,662
effective search space: 182305697292
effective search space used: 182305697292
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)