BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB656872.1|CB656872 OSJNEc11L04.r OSJNEc Oryza sativa (j... 272 1e-070
gb|CB669685.1|CB669685 OSJNEe02F21.f OSJNEe Oryza sativa (j... 272 1e-070
dbj|AK099681.1| Oryza sativa (japonica cultivar-group) cDNA... 272 1e-070
emb|AJ582955.1| Oryza sativa (japonica cultivar-group) part... 272 1e-070
ref|XM_482907.1| Oryza sativa (japonica cultivar-group), mRNA 272 1e-070
dbj|AP004162.1| Oryza sativa (japonica cultivar-group) chro... 176 6e-042
gb|AACV01018706.1| Oryza sativa (japonica cultivar-group) c... 176 6e-042
dbj|AP004457.2| Oryza sativa (japonica cultivar-group) geno... 176 6e-042
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 176 6e-042
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 176 6e-042
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 176 6e-042
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 176 6e-042
gb|CB643658.1|CB643658 OSJNEb04H13.r OSJNEb Oryza sativa (j... 149 1e-033
gb|CF303361.1|CF303361 ABF1--02-A21.g1 ABF3-overexpressing ... 145 2e-032
gb|AQ271924.1|AQ271924 nbxb0027A03f CUGI Rice BAC Library O... 103 7e-020
gb|AQ328306.1|AQ328306 nbxb0042F18f CUGI Rice BAC Library O... 103 7e-020
gb|CB669686.1|CB669686 OSJNEe02F21.r OSJNEe Oryza sativa (j... 86 2e-014
gb|CF325655.1|CF325655 JMT1--03-N05.g1 AtJMT-overexpressing... 86 2e-014
gb|AQ794738.1|AQ794738 nbxb0053H14r CUGI Rice BAC Library O... 38 3.4
gb|AC093489.2| Oryza sativa (japonica cultivar-group) chrom... 38 3.4
gb|AC148611.1| Oryza sativa (japonica cultivar-group) chrom... 38 3.4
gb|AACV01011055.1| Oryza sativa (japonica cultivar-group) c... 38 3.4
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 38 3.4
gb|AC093954.2| Oryza sativa (japonica cultivar-group) chrom... 38 3.4
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 38 3.4
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 38 3.4
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 38 3.4
>gb|CB656872.1|CB656872 OSJNEc11L04.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11L04 3', mRNA sequence
Length = 865
Score = 272 bits (137), Expect = 1e-070
Identities = 326/389 (83%)
Strand = Plus / Plus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 171 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 230
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 231 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 290
Query: 126 ccgagcactgcagattccaaggctcccagtgttaactggcccgatctcatataaatgctc 185
| ||||| ||||| ||||| || |||| ||||| ||| |||| |||| | ||||||||
Sbjct: 291 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 350
Query: 186 tctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccctttttgctg 245
|||| ||| ||||||||||| |||| || |||||||||||| || | || |||||||
Sbjct: 351 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 410
Query: 246 gaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaatgaatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || |||||||||
Sbjct: 411 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 470
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcgataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 471 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 530
Query: 366 ttgaaagaatcagatggaccatcatactt 394
||||||||||||||||| |||||||||||
Sbjct: 531 ttgaaagaatcagatgggccatcatactt 559
>gb|CB669685.1|CB669685 OSJNEe02F21.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02F21 5', mRNA sequence
Length = 863
Score = 272 bits (137), Expect = 1e-070
Identities = 326/389 (83%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 747 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 688
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 687 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 628
Query: 126 ccgagcactgcagattccaaggctcccagtgttaactggcccgatctcatataaatgctc 185
| ||||| ||||| ||||| || |||| ||||| ||| |||| |||| | ||||||||
Sbjct: 627 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 568
Query: 186 tctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccctttttgctg 245
|||| ||| ||||||||||| |||| || |||||||||||| || | || |||||||
Sbjct: 567 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 508
Query: 246 gaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaatgaatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || |||||||||
Sbjct: 507 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 448
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcgataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 447 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 388
Query: 366 ttgaaagaatcagatggaccatcatactt 394
||||||||||||||||| |||||||||||
Sbjct: 387 ttgaaagaatcagatgggccatcatactt 359
>dbj|AK099681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071F22, full
insert sequence
Length = 2097
Score = 272 bits (137), Expect = 1e-070
Identities = 326/389 (83%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 1545 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 1486
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 1485 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 1426
Query: 126 ccgagcactgcagattccaaggctcccagtgttaactggcccgatctcatataaatgctc 185
| ||||| ||||| ||||| || |||| ||||| ||| |||| |||| | ||||||||
Sbjct: 1425 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 1366
Query: 186 tctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccctttttgctg 245
|||| ||| ||||||||||| |||| || |||||||||||| || | || |||||||
Sbjct: 1365 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 1306
Query: 246 gaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaatgaatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || |||||||||
Sbjct: 1305 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 1246
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcgataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 1245 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 1186
Query: 366 ttgaaagaatcagatggaccatcatactt 394
||||||||||||||||| |||||||||||
Sbjct: 1185 ttgaaagaatcagatgggccatcatactt 1157
>emb|AJ582955.1| Oryza sativa (japonica cultivar-group) partial mRNA for glycoprotein
3-alpha-L-fucosyltransferase (FUT11 gene)
Length = 1419
Score = 272 bits (137), Expect = 1e-070
Identities = 326/389 (83%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 1328 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 1269
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 1268 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 1209
Query: 126 ccgagcactgcagattccaaggctcccagtgttaactggcccgatctcatataaatgctc 185
| ||||| ||||| ||||| || |||| ||||| ||| |||| |||| | ||||||||
Sbjct: 1208 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 1149
Query: 186 tctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccctttttgctg 245
|||| ||| ||||||||||| |||| || |||||||||||| || | || |||||||
Sbjct: 1148 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 1089
Query: 246 gaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaatgaatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || |||||||||
Sbjct: 1088 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 1029
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcgataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 1028 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 969
Query: 366 ttgaaagaatcagatggaccatcatactt 394
||||||||||||||||| |||||||||||
Sbjct: 968 ttgaaagaatcagatgggccatcatactt 940
>ref|XM_482907.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2097
Score = 272 bits (137), Expect = 1e-070
Identities = 326/389 (83%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 1546 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 1487
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 1486 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 1427
Query: 126 ccgagcactgcagattccaaggctcccagtgttaactggcccgatctcatataaatgctc 185
| ||||| ||||| ||||| || |||| ||||| ||| |||| |||| | ||||||||
Sbjct: 1426 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 1367
Query: 186 tctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccctttttgctg 245
|||| ||| ||||||||||| |||| || |||||||||||| || | || |||||||
Sbjct: 1366 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 1307
Query: 246 gaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaatgaatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || |||||||||
Sbjct: 1306 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 1247
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcgataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 1246 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 1187
Query: 366 ttgaaagaatcagatggaccatcatactt 394
||||||||||||||||| |||||||||||
Sbjct: 1186 ttgaaagaatcagatgggccatcatactt 1158
>dbj|AP004162.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1320_D12,
*** SEQUENCING IN PROGRESS ***
Length = 89134
Score = 176 bits (89), Expect = 6e-042
Identities = 185/217 (85%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccct 237
|||||||||||| ||| ||||||||||| |||| || |||||||||||| || | ||
Sbjct: 21255 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 21196
Query: 238 ttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaat 297
||||||| ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 21195 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 21136
Query: 298 gaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcga 357
||||||| || || | |||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 21135 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 21076
Query: 358 taagagctttgaaagaatcagatggaccatcatactt 394
|||| || ||||||||||||||||| |||||||||||
Sbjct: 21075 taagggccttgaaagaatcagatgggccatcatactt 21039
Score = 103 bits (52), Expect = 7e-020
Identities = 118/140 (84%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 22863 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 22804
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 22803 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 22744
Query: 126 ccgagcactgcagattccaa 145
| ||||| ||||| |||||
Sbjct: 22743 gcaagcacagcagactccaa 22724
>gb|AACV01018706.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018706, whole
genome shotgun sequence
Length = 24223
Score = 176 bits (89), Expect = 6e-042
Identities = 185/217 (85%)
Strand = Plus / Plus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccct 237
|||||||||||| ||| ||||||||||| |||| || |||||||||||| || | ||
Sbjct: 12787 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 12846
Query: 238 ttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaat 297
||||||| ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 12847 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 12906
Query: 298 gaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcga 357
||||||| || || | |||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 12907 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 12966
Query: 358 taagagctttgaaagaatcagatggaccatcatactt 394
|||| || ||||||||||||||||| |||||||||||
Sbjct: 12967 taagggccttgaaagaatcagatgggccatcatactt 13003
Score = 103 bits (52), Expect = 7e-020
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 11179 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 11238
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 11239 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 11298
Query: 126 ccgagcactgcagattccaa 145
| ||||| ||||| |||||
Sbjct: 11299 gcaagcacagcagactccaa 11318
>dbj|AP004457.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0013B04
Length = 141319
Score = 176 bits (89), Expect = 6e-042
Identities = 185/217 (85%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccct 237
|||||||||||| ||| ||||||||||| |||| || |||||||||||| || | ||
Sbjct: 71431 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 71372
Query: 238 ttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaat 297
||||||| ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 71371 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 71312
Query: 298 gaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcga 357
||||||| || || | |||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 71311 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 71252
Query: 358 taagagctttgaaagaatcagatggaccatcatactt 394
|||| || ||||||||||||||||| |||||||||||
Sbjct: 71251 taagggccttgaaagaatcagatgggccatcatactt 71215
Score = 103 bits (52), Expect = 7e-020
Identities = 118/140 (84%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 73039 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 72980
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 72979 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 72920
Query: 126 ccgagcactgcagattccaa 145
| ||||| ||||| |||||
Sbjct: 72919 gcaagcacagcagactccaa 72900
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 176 bits (89), Expect = 6e-042
Identities = 185/217 (85%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccct 237
|||||||||||| ||| ||||||||||| |||| || |||||||||||| || | ||
Sbjct: 23033993 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 23033934
Query: 238 ttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaat 297
||||||| ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 23033933 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 23033874
Query: 298 gaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcga 357
||||||| || || | |||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 23033873 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 23033814
Query: 358 taagagctttgaaagaatcagatggaccatcatactt 394
|||| || ||||||||||||||||| |||||||||||
Sbjct: 23033813 taagggccttgaaagaatcagatgggccatcatactt 23033777
Score = 103 bits (52), Expect = 7e-020
Identities = 118/140 (84%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 23035601 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 23035542
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 23035541 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 23035482
Query: 126 ccgagcactgcagattccaa 145
| ||||| ||||| |||||
Sbjct: 23035481 gcaagcacagcagactccaa 23035462
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 176 bits (89), Expect = 6e-042
Identities = 185/217 (85%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccct 237
|||||||||||| ||| ||||||||||| |||| || |||||||||||| || | ||
Sbjct: 14509958 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 14509899
Query: 238 ttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaat 297
||||||| ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 14509898 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 14509839
Query: 298 gaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcga 357
||||||| || || | |||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 14509838 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 14509779
Query: 358 taagagctttgaaagaatcagatggaccatcatactt 394
|||| || ||||||||||||||||| |||||||||||
Sbjct: 14509778 taagggccttgaaagaatcagatgggccatcatactt 14509742
Score = 103 bits (52), Expect = 7e-020
Identities = 118/140 (84%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 14511566 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 14511507
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 14511506 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 14511447
Query: 126 ccgagcactgcagattccaa 145
| ||||| ||||| |||||
Sbjct: 14511446 gcaagcacagcagactccaa 14511427
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 176 bits (89), Expect = 6e-042
Identities = 185/217 (85%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccct 237
|||||||||||| ||| ||||||||||| |||| || |||||||||||| || | ||
Sbjct: 22111964 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 22111905
Query: 238 ttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaat 297
||||||| ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 22111904 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 22111845
Query: 298 gaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcga 357
||||||| || || | |||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 22111844 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 22111785
Query: 358 taagagctttgaaagaatcagatggaccatcatactt 394
|||| || ||||||||||||||||| |||||||||||
Sbjct: 22111784 taagggccttgaaagaatcagatgggccatcatactt 22111748
Score = 103 bits (52), Expect = 7e-020
Identities = 118/140 (84%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 22113572 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 22113513
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 22113512 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 22113453
Query: 126 ccgagcactgcagattccaa 145
| ||||| ||||| |||||
Sbjct: 22113452 gcaagcacagcagactccaa 22113433
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 176 bits (89), Expect = 6e-042
Identities = 185/217 (85%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtcccct 237
|||||||||||| ||| ||||||||||| |||| || |||||||||||| || | ||
Sbjct: 23272080 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 23272021
Query: 238 ttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaat 297
||||||| ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 23272020 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 23271961
Query: 298 gaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcga 357
||||||| || || | |||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 23271960 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 23271901
Query: 358 taagagctttgaaagaatcagatggaccatcatactt 394
|||| || ||||||||||||||||| |||||||||||
Sbjct: 23271900 taagggccttgaaagaatcagatgggccatcatactt 23271864
Score = 103 bits (52), Expect = 7e-020
Identities = 118/140 (84%)
Strand = Plus / Minus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 23273688 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 23273629
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 23273628 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 23273569
Query: 126 ccgagcactgcagattccaa 145
| ||||| ||||| |||||
Sbjct: 23273568 gcaagcacagcagactccaa 23273549
>gb|CB643658.1|CB643658 OSJNEb04H13.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04H13 3', mRNA sequence
Length = 861
Score = 149 bits (75), Expect = 1e-033
Identities = 183/219 (83%)
Strand = Plus / Plus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||||| |||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 621 gcctgacattgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 680
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 681 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 740
Query: 126 ccgagcactgcagattccaaggctcccagtgttaactggcccgatctcatataaatgctc 185
| ||||| ||||| ||||| || |||| ||||| ||| |||| |||| | ||||||||
Sbjct: 741 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 800
Query: 186 tctgacttaaaccgccctctctctcggataaacaagtgg 224
|||| ||| ||||||||||| |||| || ||||||||||
Sbjct: 801 tctgtcttgaaccgccctctttctctgacaaacaagtgg 839
>gb|CF303361.1|CF303361 ABF1--02-A21.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-A21, mRNA sequence
Length = 588
Score = 145 bits (73), Expect = 2e-032
Identities = 136/157 (86%)
Strand = Plus / Minus
Query: 238 ttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaaat 297
||||||| ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 574 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 515
Query: 298 gaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcga 357
||||||| || || | |||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 514 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 455
Query: 358 taagagctttgaaagaatcagatggaccatcatactt 394
|||| || ||||||||||||||||| |||||||||||
Sbjct: 454 taagggccttgaaagaatcagatgggccatcatactt 418
>gb|AQ271924.1|AQ271924 nbxb0027A03f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0027A03f, DNA sequence
Length = 604
Score = 103 bits (52), Expect = 7e-020
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 67 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 126
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 127 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 186
Query: 126 ccgagcactgcagattccaa 145
| ||||| ||||| |||||
Sbjct: 187 gcaagcacagcagactccaa 206
>gb|AQ328306.1|AQ328306 nbxb0042F18f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0042F18f, DNA sequence
Length = 616
Score = 103 bits (52), Expect = 7e-020
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 67 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 126
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
|||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 127 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 186
Query: 126 ccgagcactgcagattccaa 145
| ||||| ||||| |||||
Sbjct: 187 gcaagcacagcagactccaa 206
>gb|CB669686.1|CB669686 OSJNEe02F21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02F21 3', mRNA sequence
Length = 771
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 661 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 720
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgag 112
|||||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 721 ctaatacttggtggtctttcatccttccacacaggaacatgattgag 767
>gb|CF325655.1|CF325655 JMT1--03-N05.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-N05, mRNA sequence
Length = 378
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 6 gcctgacgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacct 65
||||| |||||||| || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 266 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 325
Query: 66 ctaatactcggtggcctttcatccttccatacaggaacgtggttgag 112
|||||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 326 ctaatacttggtggtctttcatccttccacacaggaacatgattgag 372
>gb|AQ794738.1|AQ794738 nbxb0053H14r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0053H14r, DNA sequence
Length = 407
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagtc 281
|||||||||||||||||||
Sbjct: 189 atttgtaaattttggagtc 171
>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10,
complete sequence
Length = 102275
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagtc 281
|||||||||||||||||||
Sbjct: 26436 atttgtaaattttggagtc 26418
>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10,
complete sequence
Length = 153366
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagtc 281
|||||||||||||||||||
Sbjct: 27596 atttgtaaattttggagtc 27578
>gb|AACV01011055.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011055, whole
genome shotgun sequence
Length = 14326
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagtc 281
|||||||||||||||||||
Sbjct: 6492 atttgtaaattttggagtc 6474
>ref|NT_107223.1| Oryza sativa (japonica cultivar-group)
Length = 1494033
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagtc 281
|||||||||||||||||||
Sbjct: 1418194 atttgtaaattttggagtc 1418176
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12,
complete sequence
Length = 88725
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagtc 281
|||||||||||||||||||
Sbjct: 77623 atttgtaaattttggagtc 77605
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagtc 281
|||||||||||||||||||
Sbjct: 5219073 atttgtaaattttggagtc 5219055
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagtc 281
|||||||||||||||||||
Sbjct: 5219073 atttgtaaattttggagtc 5219055
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagtc 281
|||||||||||||||||||
Sbjct: 5340922 atttgtaaattttggagtc 5340904
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 613,452
Number of Sequences: 438736
Number of extensions: 613452
Number of successful extensions: 11185
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10999
Number of HSP's gapped (non-prelim): 174
length of query: 394
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 374
effective length of database: 2,791,645,196
effective search space: 1044075303304
effective search space used: 1044075303304
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)