BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ23f06.xg.2.1
(683 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB654216.1|CB654216 OSJNEc06B10.f OSJNEc Oryza sativa (j... 583 e-164
dbj|AK061821.1| Oryza sativa (japonica cultivar-group) cDNA... 583 e-164
dbj|AK099102.1| Oryza sativa (japonica cultivar-group) cDNA... 583 e-164
ref|XM_450905.1| Oryza sativa (japonica cultivar-group), mRNA 583 e-164
ref|XM_506666.1| PREDICTED Oryza sativa (japonica cultivar-... 583 e-164
gb|CB679364.1|CB679364 OSJNEf02M13.f OSJNEf Oryza sativa (j... 454 e-125
gb|D39787.1|D39787 RICS1380A Rice shoot Oryza sativa (japon... 268 4e-069
dbj|AP005904.3| Oryza sativa (japonica cultivar-group) geno... 250 8e-064
dbj|AP006453.3| Oryza sativa (japonica cultivar-group) geno... 250 8e-064
gb|AACV01019900.1| Oryza sativa (japonica cultivar-group) c... 250 8e-064
ref|NT_107083.1| Oryza sativa (japonica cultivar-group) 250 8e-064
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 250 8e-064
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 250 8e-064
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 250 8e-064
gb|AQ916049.1|AQ916049 nbeb0061A10r CUGI Rice BAC Library (... 242 2e-061
gb|CA755985.1|CA755985 BR030032000_PLATE_E03_21_021.ab1 OA ... 224 5e-056
gb|C27470.1|C27470 C27470 Rice callus cDNA Oryza sativa (ja... 198 3e-048
gb|CB654217.1|CB654217 OSJNEc06B10.r OSJNEc Oryza sativa (j... 157 9e-036
gb|CB655408.1|CB655408 OSJNEc08M22.r OSJNEc Oryza sativa (j... 117 8e-024
gb|CB679365.1|CB679365 OSJNEf02M13.r OSJNEf Oryza sativa (j... 88 7e-015
gb|AACV01019899.1| Oryza sativa (japonica cultivar-group) c... 78 7e-012
>gb|CB654216.1|CB654216 OSJNEc06B10.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc06B10 5', mRNA sequence
Length = 846
Score = 583 bits (294), Expect = e-164
Identities = 548/641 (85%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 53 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 112
Query: 103 caaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttactcat 162
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 113 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 172
Query: 163 cgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgaggaa 222
|| || || |||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 173 cgtgactcgatgcaacgcgcgctcattcaacaggaatacaggactatgtattctgaggat 232
Query: 223 ctctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgctgtgg 282
||||| | || || ||||||||||||| |||| ||||||||||||| ||| |||| |||
Sbjct: 233 ctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatgg 292
Query: 283 attcttgatcctgctggacgtgatncnactgttttgagagaagctctaagtggtgacact 342
|||||||||||||||||||| ||| | |||||||||||||||||||| |||||||| |||
Sbjct: 293 attcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatact 352
Query: 343 atggatctgagagcagccactgatattatatgttccaggacaccatcacagttgnaaata 402
|| || ||||||||||||||||| || |||||||||||||||||||| ||| || |||||
Sbjct: 353 attgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaata 412
Query: 403 atgaaacagacttattatgctagatttggtacttatcttgagcatgacattggtcaccac 462
||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||| | |
Sbjct: 413 atgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcgc 472
Query: 463 acatctggcgatcaccagnagcttttacttgcctatgtggggattccacgctacgaaggt 522
||||| ||||| || ||| |||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 473 acatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaaggt 532
Query: 523 cctgaggttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgag 582
||||||||||||||||| || | |||||| ||||||||||| | || ||||||||||||
Sbjct: 533 cctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtgag 592
Query: 583 naaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngctgggca 642
||||||| || || |||||| | || || ||||||| |||| ||||||||
Sbjct: 593 aaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggca 652
Query: 643 cacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
||| ||||||||| | ||||| ||||||||||||||||
Sbjct: 653 cacatggcatctgttgcctctgcttaccatcatatgtatga 693
>dbj|AK061821.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B11, full
insert sequence
Length = 1298
Score = 583 bits (294), Expect = e-164
Identities = 548/641 (85%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 108 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 167
Query: 103 caaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttactcat 162
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 168 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 227
Query: 163 cgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgaggaa 222
|| || || |||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 228 cgtgactcgatgcaacgcgcgctcattcaacaggaatacaggactatgtattctgaggat 287
Query: 223 ctctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgctgtgg 282
||||| | || || ||||||||||||| |||| ||||||||||||| ||| |||| |||
Sbjct: 288 ctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatgg 347
Query: 283 attcttgatcctgctggacgtgatncnactgttttgagagaagctctaagtggtgacact 342
|||||||||||||||||||| ||| | |||||||||||||||||||| |||||||| |||
Sbjct: 348 attcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatact 407
Query: 343 atggatctgagagcagccactgatattatatgttccaggacaccatcacagttgnaaata 402
|| || ||||||||||||||||| || |||||||||||||||||||| ||| || |||||
Sbjct: 408 attgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaata 467
Query: 403 atgaaacagacttattatgctagatttggtacttatcttgagcatgacattggtcaccac 462
||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||| | |
Sbjct: 468 atgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcgc 527
Query: 463 acatctggcgatcaccagnagcttttacttgcctatgtggggattccacgctacgaaggt 522
||||| ||||| || ||| |||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 528 acatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaaggt 587
Query: 523 cctgaggttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgag 582
||||||||||||||||| || | |||||| ||||||||||| | || ||||||||||||
Sbjct: 588 cctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtgag 647
Query: 583 naaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngctgggca 642
||||||| || || |||||| | || || ||||||| |||| ||||||||
Sbjct: 648 aaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggca 707
Query: 643 cacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
||| ||||||||| | ||||| ||||||||||||||||
Sbjct: 708 cacatggcatctgttgcctctgcttaccatcatatgtatga 748
>dbj|AK099102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033F23, full
insert sequence
Length = 1296
Score = 583 bits (294), Expect = e-164
Identities = 548/641 (85%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 106 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 165
Query: 103 caaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttactcat 162
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 166 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 225
Query: 163 cgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgaggaa 222
|| || || |||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 226 cgtgactcgatgcaacgcgcgctcattcaacaggaatacaggactatgtattctgaggat 285
Query: 223 ctctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgctgtgg 282
||||| | || || ||||||||||||| |||| ||||||||||||| ||| |||| |||
Sbjct: 286 ctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatgg 345
Query: 283 attcttgatcctgctggacgtgatncnactgttttgagagaagctctaagtggtgacact 342
|||||||||||||||||||| ||| | |||||||||||||||||||| |||||||| |||
Sbjct: 346 attcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatact 405
Query: 343 atggatctgagagcagccactgatattatatgttccaggacaccatcacagttgnaaata 402
|| || ||||||||||||||||| || |||||||||||||||||||| ||| || |||||
Sbjct: 406 attgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaata 465
Query: 403 atgaaacagacttattatgctagatttggtacttatcttgagcatgacattggtcaccac 462
||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||| | |
Sbjct: 466 atgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcgc 525
Query: 463 acatctggcgatcaccagnagcttttacttgcctatgtggggattccacgctacgaaggt 522
||||| ||||| || ||| |||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 526 acatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaaggt 585
Query: 523 cctgaggttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgag 582
||||||||||||||||| || | |||||| ||||||||||| | || ||||||||||||
Sbjct: 586 cctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtgag 645
Query: 583 naaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngctgggca 642
||||||| || || |||||| | || || ||||||| |||| ||||||||
Sbjct: 646 aaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggca 705
Query: 643 cacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
||| ||||||||| | ||||| ||||||||||||||||
Sbjct: 706 cacatggcatctgttgcctctgcttaccatcatatgtatga 746
>ref|XM_450905.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1296
Score = 583 bits (294), Expect = e-164
Identities = 548/641 (85%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 106 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 165
Query: 103 caaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttactcat 162
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 166 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 225
Query: 163 cgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgaggaa 222
|| || || |||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 226 cgtgactcgatgcaacgcgcgctcattcaacaggaatacaggactatgtattctgaggat 285
Query: 223 ctctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgctgtgg 282
||||| | || || ||||||||||||| |||| ||||||||||||| ||| |||| |||
Sbjct: 286 ctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatgg 345
Query: 283 attcttgatcctgctggacgtgatncnactgttttgagagaagctctaagtggtgacact 342
|||||||||||||||||||| ||| | |||||||||||||||||||| |||||||| |||
Sbjct: 346 attcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatact 405
Query: 343 atggatctgagagcagccactgatattatatgttccaggacaccatcacagttgnaaata 402
|| || ||||||||||||||||| || |||||||||||||||||||| ||| || |||||
Sbjct: 406 attgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaata 465
Query: 403 atgaaacagacttattatgctagatttggtacttatcttgagcatgacattggtcaccac 462
||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||| | |
Sbjct: 466 atgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcgc 525
Query: 463 acatctggcgatcaccagnagcttttacttgcctatgtggggattccacgctacgaaggt 522
||||| ||||| || ||| |||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 526 acatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaaggt 585
Query: 523 cctgaggttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgag 582
||||||||||||||||| || | |||||| ||||||||||| | || ||||||||||||
Sbjct: 586 cctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtgag 645
Query: 583 naaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngctgggca 642
||||||| || || |||||| | || || ||||||| |||| ||||||||
Sbjct: 646 aaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggca 705
Query: 643 cacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
||| ||||||||| | ||||| ||||||||||||||||
Sbjct: 706 cacatggcatctgttgcctctgcttaccatcatatgtatga 746
>ref|XM_506666.1| PREDICTED Oryza sativa (japonica cultivar-group), B1339H09.19 mRNA
Length = 1298
Score = 583 bits (294), Expect = e-164
Identities = 548/641 (85%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 108 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 167
Query: 103 caaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttactcat 162
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 168 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 227
Query: 163 cgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgaggaa 222
|| || || |||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 228 cgtgactcgatgcaacgcgcgctcattcaacaggaatacaggactatgtattctgaggat 287
Query: 223 ctctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgctgtgg 282
||||| | || || ||||||||||||| |||| ||||||||||||| ||| |||| |||
Sbjct: 288 ctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatgg 347
Query: 283 attcttgatcctgctggacgtgatncnactgttttgagagaagctctaagtggtgacact 342
|||||||||||||||||||| ||| | |||||||||||||||||||| |||||||| |||
Sbjct: 348 attcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatact 407
Query: 343 atggatctgagagcagccactgatattatatgttccaggacaccatcacagttgnaaata 402
|| || ||||||||||||||||| || |||||||||||||||||||| ||| || |||||
Sbjct: 408 attgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaata 467
Query: 403 atgaaacagacttattatgctagatttggtacttatcttgagcatgacattggtcaccac 462
||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||| | |
Sbjct: 468 atgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcgc 527
Query: 463 acatctggcgatcaccagnagcttttacttgcctatgtggggattccacgctacgaaggt 522
||||| ||||| || ||| |||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 528 acatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaaggt 587
Query: 523 cctgaggttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgag 582
||||||||||||||||| || | |||||| ||||||||||| | || ||||||||||||
Sbjct: 588 cctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtgag 647
Query: 583 naaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngctgggca 642
||||||| || || |||||| | || || ||||||| |||| ||||||||
Sbjct: 648 aaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggca 707
Query: 643 cacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
||| ||||||||| | ||||| ||||||||||||||||
Sbjct: 708 cacatggcatctgttgcctctgcttaccatcatatgtatga 748
>gb|CB679364.1|CB679364 OSJNEf02M13.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M13 5', mRNA sequence
Length = 782
Score = 454 bits (229), Expect = e-125
Identities = 426/500 (85%)
Strand = Plus / Plus
Query: 184 ctcattcaacaggaatacagggctatgtatcatgaggaactctcccatcgcatttcatct 243
||||||||||||||||||||| |||||||| |||||| ||||| | || || ||||||
Sbjct: 11 ctcattcaacaggaatacaggactatgtattctgaggatctctctcgccgtatatcatct 70
Query: 244 gaactcaatggaaaccacaagaaagctatgttgctgtggattcttgatcctgctggacgt 303
||||||| |||| ||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 71 gaactcagtggacaccacaagaaagcaatgctgctatggattcttgatcctgctggacga 130
Query: 304 gatncnactgttttgagagaagctctaagtggtgacactatggatctgagagcagccact 363
||| | |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 131 gatgcaactgttttgagagaagctctgagtggtgatactattgacctgagagcagccact 190
Query: 364 gatattatatgttccaggacaccatcacagttgnaaataatgaaacagacttattatgct 423
|| || |||||||||||||||||||| ||| || |||||||||||||||||||| ||||
Sbjct: 191 gagataatatgttccaggacaccatcgcagctgcaaataatgaaacagacttatcatgca 250
Query: 424 agatttggtacttatcttgagcatgacattggtcaccacacatctggcgatcaccagnag 483
| ||||||||||||||||||||| ||||||||||| | |||||| ||||| || ||| ||
Sbjct: 251 aaatttggtacttatcttgagcacgacattggtcagcgcacatcaggcgaccatcagaag 310
Query: 484 cttttacttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctaccatt 543
|| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 311 ctcttgcttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactata 370
Query: 544 gngacacatgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgag 603
| |||||| ||||||||||| | || |||||||||||| ||||||| || || ||||||
Sbjct: 371 gtgacacacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgag 430
Query: 604 nnnnnntnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtct 663
| || || ||||||| |||| ||||||||||| ||||||||| | |||
Sbjct: 431 aagaccttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctct 490
Query: 664 gcnnaccatcatatgtatga 683
|| ||||||||||||||||
Sbjct: 491 gcttaccatcatatgtatga 510
>gb|D39787.1|D39787 RICS1380A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 361
Score = 268 bits (135), Expect = 4e-069
Identities = 224/255 (87%)
Strand = Plus / Plus
Query: 349 ctgagagcagccactgatattatatgttccaggacaccatcacagttgnaaataatgaaa 408
||||||||||||||||| || |||||||||||||||||||| ||| || |||||||||||
Sbjct: 4 ctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaataatgaaa 63
Query: 409 cagacttattatgctagatttggtacttatcttgagcatgacattggtcaccacacatct 468
||||||||| |||| | ||||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 64 cagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcgcacatca 123
Query: 469 ggcgatcaccagnagcttttacttgcctatgtggggattccacgctacgaaggtcctgag 528
||||| || ||| |||| || ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 124 ggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaaggtcctgag 183
Query: 529 gttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgagnaaagg 588
||||||||||| || | |||||| ||||||||||| | || |||||||||||| |||||
Sbjct: 184 gttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtgagaaaagg 243
Query: 589 ctcggtacggatgag 603
|| || || ||||||
Sbjct: 244 ctgggcactgatgag 258
Score = 65.9 bits (33), Expect = 3e-008
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 622 ttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtat 681
||||||| |||| ||||||||||| ||||||||| | ||||| ||||||||||||||
Sbjct: 279 ttcactgaacgcagctgggcacacatggcatctgttgcctctgcttaccatcatatgtat 338
Query: 682 ga 683
||
Sbjct: 339 ga 340
>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1040D06
Length = 155034
Score = 250 bits (126), Expect = 8e-064
Identities = 189/211 (89%)
Strand = Plus / Plus
Query: 263 agaaagctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagag 322
||||||| ||| |||| ||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 52082 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 52141
Query: 323 aagctctaagtggtgacactatggatctgagagcagccactgatattatatgttccagga 382
||||||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||
Sbjct: 52142 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 52201
Query: 383 caccatcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttg 442
||||||| ||| || |||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 52202 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 52261
Query: 443 agcatgacattggtcaccacacatctggcga 473
|||| ||||||||||| | |||||| |||||
Sbjct: 52262 agcacgacattggtcagcgcacatcaggcga 52292
Score = 141 bits (71), Expect = 6e-031
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 490 cttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctaccattgngaca 549
||||| |||||||||||||||||||| ||||||||||||||||||||||| || | ||||
Sbjct: 52806 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 52865
Query: 550 catgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnn 609
|| ||||||||||| | || |||||||||||| ||||||| || || ||||||
Sbjct: 52866 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 52925
Query: 610 tnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnac 669
| || || ||||||| |||| ||||||||||| ||||||||| | ||||| ||
Sbjct: 52926 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 52985
Query: 670 catcatatgtatga 683
||||||||||||||
Sbjct: 52986 catcatatgtatga 52999
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 117 agggtttggctgtgacagtacaacagtgataaacatacttactcatcgcgattcagtgca 176
||||||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||
Sbjct: 51705 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 51764
Query: 177 gcgtggactcattcaacaggaatacagggctatgtatcatgaggaactctcccatcgcat 236
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | || ||
Sbjct: 51765 acgcgcgctcattcaacaggaatacaggactatgtattctgaggatctctctcgccgtat 51824
Query: 237 ttcatctgaactcaatggaaaccacaag 264
||||||||||||| |||| ||||||||
Sbjct: 51825 atcatctgaactcagtggacaccacaag 51852
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 50111 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 50170
Query: 103 caaaaggccttcaaagg 119
|| ||||||||||||||
Sbjct: 50171 cacaaggccttcaaagg 50187
>dbj|AP006453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1339H09
Length = 131136
Score = 250 bits (126), Expect = 8e-064
Identities = 189/211 (89%)
Strand = Plus / Plus
Query: 263 agaaagctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagag 322
||||||| ||| |||| ||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 91384 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 91443
Query: 323 aagctctaagtggtgacactatggatctgagagcagccactgatattatatgttccagga 382
||||||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||
Sbjct: 91444 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 91503
Query: 383 caccatcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttg 442
||||||| ||| || |||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 91504 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 91563
Query: 443 agcatgacattggtcaccacacatctggcga 473
|||| ||||||||||| | |||||| |||||
Sbjct: 91564 agcacgacattggtcagcgcacatcaggcga 91594
Score = 141 bits (71), Expect = 6e-031
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 490 cttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctaccattgngaca 549
||||| |||||||||||||||||||| ||||||||||||||||||||||| || | ||||
Sbjct: 92108 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 92167
Query: 550 catgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnn 609
|| ||||||||||| | || |||||||||||| ||||||| || || ||||||
Sbjct: 92168 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 92227
Query: 610 tnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnac 669
| || || ||||||| |||| ||||||||||| ||||||||| | ||||| ||
Sbjct: 92228 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 92287
Query: 670 catcatatgtatga 683
||||||||||||||
Sbjct: 92288 catcatatgtatga 92301
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 117 agggtttggctgtgacagtacaacagtgataaacatacttactcatcgcgattcagtgca 176
||||||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||
Sbjct: 91007 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 91066
Query: 177 gcgtggactcattcaacaggaatacagggctatgtatcatgaggaactctcccatcgcat 236
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | || ||
Sbjct: 91067 acgcgcgctcattcaacaggaatacaggactatgtattctgaggatctctctcgccgtat 91126
Query: 237 ttcatctgaactcaatggaaaccacaag 264
||||||||||||| |||| ||||||||
Sbjct: 91127 atcatctgaactcagtggacaccacaag 91154
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 89413 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 89472
Query: 103 caaaaggccttcaaagg 119
|| ||||||||||||||
Sbjct: 89473 cacaaggccttcaaagg 89489
>gb|AACV01019900.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019900, whole
genome shotgun sequence
Length = 5795
Score = 250 bits (126), Expect = 8e-064
Identities = 189/211 (89%)
Strand = Plus / Minus
Query: 263 agaaagctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagag 322
||||||| ||| |||| ||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 3884 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 3825
Query: 323 aagctctaagtggtgacactatggatctgagagcagccactgatattatatgttccagga 382
||||||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||
Sbjct: 3824 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 3765
Query: 383 caccatcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttg 442
||||||| ||| || |||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 3764 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 3705
Query: 443 agcatgacattggtcaccacacatctggcga 473
|||| ||||||||||| | |||||| |||||
Sbjct: 3704 agcacgacattggtcagcgcacatcaggcga 3674
Score = 141 bits (71), Expect = 6e-031
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 490 cttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctaccattgngaca 549
||||| |||||||||||||||||||| ||||||||||||||||||||||| || | ||||
Sbjct: 3160 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 3101
Query: 550 catgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnn 609
|| ||||||||||| | || |||||||||||| ||||||| || || ||||||
Sbjct: 3100 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 3041
Query: 610 tnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnac 669
| || || ||||||| |||| ||||||||||| ||||||||| | ||||| ||
Sbjct: 3040 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 2981
Query: 670 catcatatgtatga 683
||||||||||||||
Sbjct: 2980 catcatatgtatga 2967
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 117 agggtttggctgtgacagtacaacagtgataaacatacttactcatcgcgattcagtgca 176
||||||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||
Sbjct: 4261 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 4202
Query: 177 gcgtggactcattcaacaggaatacagggctatgtatcatgaggaactctcccatcgcat 236
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | || ||
Sbjct: 4201 acgcgcgctcattcaacaggaatacaggactatgtattctgaggatctctctcgccgtat 4142
Query: 237 ttcatctgaactcaatggaaaccacaag 264
||||||||||||| |||| ||||||||
Sbjct: 4141 atcatctgaactcagtggacaccacaag 4114
>ref|NT_107083.1| Oryza sativa (japonica cultivar-group)
Length = 598321
Score = 250 bits (126), Expect = 8e-064
Identities = 189/211 (89%)
Strand = Plus / Plus
Query: 263 agaaagctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagag 322
||||||| ||| |||| ||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 101954 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 102013
Query: 323 aagctctaagtggtgacactatggatctgagagcagccactgatattatatgttccagga 382
||||||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||
Sbjct: 102014 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 102073
Query: 383 caccatcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttg 442
||||||| ||| || |||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 102074 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 102133
Query: 443 agcatgacattggtcaccacacatctggcga 473
|||| ||||||||||| | |||||| |||||
Sbjct: 102134 agcacgacattggtcagcgcacatcaggcga 102164
Score = 141 bits (71), Expect = 6e-031
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 490 cttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctaccattgngaca 549
||||| |||||||||||||||||||| ||||||||||||||||||||||| || | ||||
Sbjct: 102678 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 102737
Query: 550 catgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnn 609
|| ||||||||||| | || |||||||||||| ||||||| || || ||||||
Sbjct: 102738 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 102797
Query: 610 tnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnac 669
| || || ||||||| |||| ||||||||||| ||||||||| | ||||| ||
Sbjct: 102798 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 102857
Query: 670 catcatatgtatga 683
||||||||||||||
Sbjct: 102858 catcatatgtatga 102871
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 117 agggtttggctgtgacagtacaacagtgataaacatacttactcatcgcgattcagtgca 176
||||||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||
Sbjct: 101577 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 101636
Query: 177 gcgtggactcattcaacaggaatacagggctatgtatcatgaggaactctcccatcgcat 236
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | || ||
Sbjct: 101637 acgcgcgctcattcaacaggaatacaggactatgtattctgaggatctctctcgccgtat 101696
Query: 237 ttcatctgaactcaatggaaaccacaag 264
||||||||||||| |||| ||||||||
Sbjct: 101697 atcatctgaactcagtggacaccacaag 101724
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 99983 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 100042
Query: 103 caaaaggccttcaaagg 119
|| ||||||||||||||
Sbjct: 100043 cacaaggccttcaaagg 100059
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 250 bits (126), Expect = 8e-064
Identities = 189/211 (89%)
Strand = Plus / Plus
Query: 263 agaaagctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagag 322
||||||| ||| |||| ||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 3043674 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 3043733
Query: 323 aagctctaagtggtgacactatggatctgagagcagccactgatattatatgttccagga 382
||||||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||
Sbjct: 3043734 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 3043793
Query: 383 caccatcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttg 442
||||||| ||| || |||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 3043794 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 3043853
Query: 443 agcatgacattggtcaccacacatctggcga 473
|||| ||||||||||| | |||||| |||||
Sbjct: 3043854 agcacgacattggtcagcgcacatcaggcga 3043884
Score = 141 bits (71), Expect = 6e-031
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 490 cttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctaccattgngaca 549
||||| |||||||||||||||||||| ||||||||||||||||||||||| || | ||||
Sbjct: 3044398 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 3044457
Query: 550 catgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnn 609
|| ||||||||||| | || |||||||||||| ||||||| || || ||||||
Sbjct: 3044458 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 3044517
Query: 610 tnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnac 669
| || || ||||||| |||| ||||||||||| ||||||||| | ||||| ||
Sbjct: 3044518 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 3044577
Query: 670 catcatatgtatga 683
||||||||||||||
Sbjct: 3044578 catcatatgtatga 3044591
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 117 agggtttggctgtgacagtacaacagtgataaacatacttactcatcgcgattcagtgca 176
||||||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||
Sbjct: 3043297 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 3043356
Query: 177 gcgtggactcattcaacaggaatacagggctatgtatcatgaggaactctcccatcgcat 236
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | || ||
Sbjct: 3043357 acgcgcgctcattcaacaggaatacaggactatgtattctgaggatctctctcgccgtat 3043416
Query: 237 ttcatctgaactcaatggaaaccacaag 264
||||||||||||| |||| ||||||||
Sbjct: 3043417 atcatctgaactcagtggacaccacaag 3043444
Score = 77.8 bits (39), Expect = 7e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||||
Sbjct: 3041588 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccattgacctc 3041647
Query: 103 caaaaggccttcaaa 117
|| ||||||||||||
Sbjct: 3041648 cacaaggccttcaaa 3041662
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 250 bits (126), Expect = 8e-064
Identities = 189/211 (89%)
Strand = Plus / Plus
Query: 263 agaaagctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagag 322
||||||| ||| |||| ||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 12517485 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 12517544
Query: 323 aagctctaagtggtgacactatggatctgagagcagccactgatattatatgttccagga 382
||||||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||
Sbjct: 12517545 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 12517604
Query: 383 caccatcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttg 442
||||||| ||| || |||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 12517605 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 12517664
Query: 443 agcatgacattggtcaccacacatctggcga 473
|||| ||||||||||| | |||||| |||||
Sbjct: 12517665 agcacgacattggtcagcgcacatcaggcga 12517695
Score = 141 bits (71), Expect = 6e-031
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 490 cttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctaccattgngaca 549
||||| |||||||||||||||||||| ||||||||||||||||||||||| || | ||||
Sbjct: 12518209 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 12518268
Query: 550 catgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnn 609
|| ||||||||||| | || |||||||||||| ||||||| || || ||||||
Sbjct: 12518269 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 12518328
Query: 610 tnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnac 669
| || || ||||||| |||| ||||||||||| ||||||||| | ||||| ||
Sbjct: 12518329 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 12518388
Query: 670 catcatatgtatga 683
||||||||||||||
Sbjct: 12518389 catcatatgtatga 12518402
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 117 agggtttggctgtgacagtacaacagtgataaacatacttactcatcgcgattcagtgca 176
||||||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||
Sbjct: 12517108 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 12517167
Query: 177 gcgtggactcattcaacaggaatacagggctatgtatcatgaggaactctcccatcgcat 236
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | || ||
Sbjct: 12517168 acgcgcgctcattcaacaggaatacaggactatgtattctgaggatctctctcgccgtat 12517227
Query: 237 ttcatctgaactcaatggaaaccacaag 264
||||||||||||| |||| ||||||||
Sbjct: 12517228 atcatctgaactcagtggacaccacaag 12517255
Score = 77.8 bits (39), Expect = 7e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||||
Sbjct: 12515399 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccattgacctc 12515458
Query: 103 caaaaggccttcaaa 117
|| ||||||||||||
Sbjct: 12515459 cacaaggccttcaaa 12515473
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 250 bits (126), Expect = 8e-064
Identities = 189/211 (89%)
Strand = Plus / Plus
Query: 263 agaaagctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagag 322
||||||| ||| |||| ||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 13653968 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 13654027
Query: 323 aagctctaagtggtgacactatggatctgagagcagccactgatattatatgttccagga 382
||||||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||
Sbjct: 13654028 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 13654087
Query: 383 caccatcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttg 442
||||||| ||| || |||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 13654088 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 13654147
Query: 443 agcatgacattggtcaccacacatctggcga 473
|||| ||||||||||| | |||||| |||||
Sbjct: 13654148 agcacgacattggtcagcgcacatcaggcga 13654178
Score = 141 bits (71), Expect = 6e-031
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 490 cttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctaccattgngaca 549
||||| |||||||||||||||||||| ||||||||||||||||||||||| || | ||||
Sbjct: 13654692 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 13654751
Query: 550 catgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnn 609
|| ||||||||||| | || |||||||||||| ||||||| || || ||||||
Sbjct: 13654752 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 13654811
Query: 610 tnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnac 669
| || || ||||||| |||| ||||||||||| ||||||||| | ||||| ||
Sbjct: 13654812 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 13654871
Query: 670 catcatatgtatga 683
||||||||||||||
Sbjct: 13654872 catcatatgtatga 13654885
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 117 agggtttggctgtgacagtacaacagtgataaacatacttactcatcgcgattcagtgca 176
||||||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||
Sbjct: 13653591 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 13653650
Query: 177 gcgtggactcattcaacaggaatacagggctatgtatcatgaggaactctcccatcgcat 236
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | || ||
Sbjct: 13653651 acgcgcgctcattcaacaggaatacaggactatgtattctgaggatctctctcgccgtat 13653710
Query: 237 ttcatctgaactcaatggaaaccacaag 264
||||||||||||| |||| ||||||||
Sbjct: 13653711 atcatctgaactcagtggacaccacaag 13653738
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 13651997 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 13652056
Query: 103 caaaaggccttcaaagg 119
|| ||||||||||||||
Sbjct: 13652057 cacaaggccttcaaagg 13652073
>gb|AQ916049.1|AQ916049 nbeb0061A10r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0061A10r, DNA sequence
Length = 466
Score = 242 bits (122), Expect = 2e-061
Identities = 176/195 (90%)
Strand = Plus / Plus
Query: 263 agaaagctatgttgctgtggattcttgatcctgctggacgtgatncnactgttttgagag 322
||||||| ||| |||| ||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 272 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 331
Query: 323 aagctctaagtggtgacactatggatctgagagcagccactgatattatatgttccagga 382
||||||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||
Sbjct: 332 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 391
Query: 383 caccatcacagttgnaaataatgaaacagacttattatgctagatttggtacttatcttg 442
||||||| ||| || |||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 392 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 451
Query: 443 agcatgacattggtc 457
|||| ||||||||||
Sbjct: 452 agcacgacattggtc 466
>gb|CA755985.1|CA755985 BR030032000_PLATE_E03_21_021.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030032000_PLATE_E03_21_021.ab1 similar to annexin-like
protein [Medicago sativa], mRNA sequence
Length = 605
Score = 224 bits (113), Expect = 5e-056
Identities = 237/286 (82%)
Strand = Plus / Plus
Query: 398 aaataatgaaacagacttattatgctagatttggtacttatcttgagcatgacattggtc 457
|||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||
Sbjct: 9 aaataatgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtc 68
Query: 458 accacacatctggcgatcaccagnagcttttacttgcctatgtggggattccacgctacg 517
| | |||||| ||||| || ||| |||| || ||||| |||||||||||||||||||| |
Sbjct: 69 agcgcacatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatg 128
Query: 518 aaggtcctgaggttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctg 577
|||||||||||||||||||||| || | |||||| |||||| |||| | || |||||||
Sbjct: 129 aaggtcctgaggttgatcctactatagtgacacacgatgcanaggacctctataaagctg 188
Query: 578 gtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngct 637
||||| ||||||| || || |||||| | || || ||||||| |||| |||
Sbjct: 189 gtgagaaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagct 248
Query: 638 gggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
|||||||| ||||||||| | ||||| ||||||||||||||||
Sbjct: 249 gggcacacatggcatctgttgcctctgcttaccatcatatgtatga 294
>gb|C27470.1|C27470 C27470 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51961_1A, mRNA sequence
Length = 395
Score = 198 bits (100), Expect = 3e-048
Identities = 213/258 (82%)
Strand = Plus / Plus
Query: 426 atttggtacttatcttgagcatgacattggtcaccacacatctggcgatcaccagnagct 485
||||||||||||||||||||| ||||||||||| | |||||| ||||| || ||| ||||
Sbjct: 2 atttggtacttatcttgagcacgacattggtcagcgcacatcaggcgaccatcagaagct 61
Query: 486 tttacttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctaccattgn 545
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct: 62 cttgcttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagt 121
Query: 546 gacacatgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnn 605
|||||| ||||||||||| | || |||||||||||| ||||||| || || ||||||
Sbjct: 122 gacacacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaa 181
Query: 606 nnnntnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgc 665
| || || ||||||| |||| ||||||||||| ||||||||| | |||||
Sbjct: 182 gaccttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgc 241
Query: 666 nnaccatcatatgtatga 683
||||||||||||||||
Sbjct: 242 ttaccatcatatgtatga 259
>gb|CB654217.1|CB654217 OSJNEc06B10.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc06B10 3', mRNA sequence
Length = 657
Score = 157 bits (79), Expect = 9e-036
Identities = 189/233 (81%)
Strand = Plus / Minus
Query: 451 attggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggattcca 510
|||||||| | |||||| ||||| || ||| |||| || ||||| |||||||||||||||
Sbjct: 657 attggtcagcgcacatcaggcgaccatcagaagctcttgcttgcttatgtggggattcca 598
Query: 511 cgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggatttgtac 570
||||| ||||||||||||||||||||||| || | |||||| ||||||||||| | ||
Sbjct: 597 cgctatgaaggtcctgaggttgatcctactatagtgacacacgatgcaaaggacctctat 538
Query: 571 aaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgna 630
|||||||||||| ||||||| || || |||||| | || || ||||||| |
Sbjct: 537 aaagctggtgagaaaaggctgggcactgatgagaagaccttcatccgcattttcactgaa 478
Query: 631 cgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatatgtatga 683
||| ||||||||||| ||||||||| | ||||| ||||||||||||||||
Sbjct: 477 cgcagctgggcacacatggcatctgttgcctctgcttaccatcatatgtatga 425
>gb|CB655408.1|CB655408 OSJNEc08M22.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08M22 3', mRNA sequence
Length = 785
Score = 117 bits (59), Expect = 8e-024
Identities = 149/186 (80%)
Strand = Plus / Minus
Query: 498 tgtggggattccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgc 557
|||||||||||||||||| ||||||| ||||||||||| ||| || | |||||| |||||
Sbjct: 785 tgtggggattccacgctatgaaggtcgtgaggttgatcttactatagtgacacacgatgc 726
Query: 558 aaaggatttgtacaaagctggtgagnaaaggctcggtacggatgagnnnnnntnnatnng 617
|||||| | || |||||||||||| ||||||| || || |||||| | || |
Sbjct: 725 aaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagaccttcatccg 666
Query: 618 cgnnttcactgnacgcngctgggcacacntggcatctgnntcgtctgcnnaccatcatat 677
| ||||||| |||| ||||||||||| ||||||||| | ||||| ||||||||||
Sbjct: 665 cattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttaccatcatat 606
Query: 678 gtatga 683
||||||
Sbjct: 605 gtatga 600
>gb|CB679365.1|CB679365 OSJNEf02M13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M13 3', mRNA sequence
Length = 767
Score = 87.7 bits (44), Expect = 7e-015
Identities = 125/159 (78%)
Strand = Plus / Minus
Query: 525 tgaggttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgagna 584
||||||||||||||| || | |||||| ||||||||||| | || |||||||||||| |
Sbjct: 767 tgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtgagaa 708
Query: 585 aaggctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngctgggcaca 644
|||||| || || |||||| | || || ||||||| |||| ||||||||||
Sbjct: 707 aaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggcaca 648
Query: 645 cntggcatctgnntcgtctgcnnaccatcatatgtatga 683
| ||||||||| | ||||| ||||||||||||||||
Sbjct: 647 catggcatctgttgcctctgcttaccatcatatgtatga 609
>gb|AACV01019899.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019899, whole
genome shotgun sequence
Length = 5085
Score = 77.8 bits (39), Expect = 7e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 43 atggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcgacctc 102
||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||||
Sbjct: 5011 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccattgacctc 5070
Query: 103 caaaaggccttcaaa 117
|| ||||||||||||
Sbjct: 5071 cacaaggccttcaaa 5085
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 805,599
Number of Sequences: 438736
Number of extensions: 805599
Number of successful extensions: 4973
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4881
Number of HSP's gapped (non-prelim): 68
length of query: 683
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 662
effective length of database: 2,791,206,460
effective search space: 1847778676520
effective search space used: 1847778676520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)