BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635788.2.1
(753 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK105598.1| Oryza sativa (japonica cultivar-group) cDNA... 430 e-118
gb|AC124144.2| Oryza sativa (japonica cultivar-group) chrom... 430 e-118
ref|XM_475645.1| Oryza sativa (japonica cultivar-group), p... 430 e-118
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 430 e-118
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 430 e-118
gb|AACV01010939.1| Oryza sativa (japonica cultivar-group) c... 408 e-111
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 408 e-111
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 408 e-111
dbj|AP002539.2| Oryza sativa (japonica cultivar-group) geno... 125 4e-026
dbj|AK108308.1| Oryza sativa (japonica cultivar-group) cDNA... 125 4e-026
dbj|AP002521.1| Oryza sativa (japonica cultivar-group) geno... 125 4e-026
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 125 4e-026
ref|XM_550213.1| Oryza sativa (japonica cultivar-group), mRNA 125 4e-026
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 125 4e-026
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 125 4e-026
gb|AQ872562.1|AQ872562 nbeb0051D10r CUGI Rice BAC Library (... 96 3e-017
gb|AACV01000238.1| Oryza sativa (japonica cultivar-group) c... 96 3e-017
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
gb|AU174266.1|AU174266 AU174266 Rice shoot Oryza sativa (ja... 94 1e-016
gb|AC118671.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AK058880.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
dbj|AK067497.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
dbj|AK109868.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
dbj|AK111283.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 ... 42 0.43
gb|AC121491.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AP004765.3| Oryza sativa (japonica cultivar-group) geno... 42 0.43
dbj|AP004001.3| Oryza sativa (japonica cultivar-group) geno... 42 0.43
gb|AC124143.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AP003333.4| Oryza sativa (japonica cultivar-group) geno... 42 0.43
dbj|AP003253.3| Oryza sativa (japonica cultivar-group) geno... 42 0.43
gb|AACV01001740.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01003920.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01006570.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01008115.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01012714.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01018845.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
ref|NM_192623.1| Oryza sativa (japonica cultivar-group), p... 42 0.43
ref|XM_464982.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.43
ref|XM_483328.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.43
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 42 0.43
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 42 0.43
ref|NT_107221.1| Oryza sativa (japonica cultivar-group) 42 0.43
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 42 0.43
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 42 0.43
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.43
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.43
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 42 0.43
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.43
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
>dbj|AK105598.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A03, full
insert sequence
Length = 1114
Score = 430 bits (217), Expect = e-118
Identities = 434/505 (85%), Gaps = 6/505 (1%)
Strand = Plus / Plus
Query: 167 cgcccaagaccatcacggcgatcctgagcaaggccgggcagttcaccaagttcctccagc 226
|||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 182 cgccgaagacgatcacggcgatcctgaccaaggccggtcagttcaccaagttcctccagc 241
Query: 227 tgctgcagtcgacgcgggaggcggagcagatcaccaaccagctcaagggcaagccgtc-- 284
| ||||||||||||| || | |||||||||| ||||||| ||||||| ||| ||||
Sbjct: 242 tactgcagtcgacgcaggccggcgagcagatcaacaaccagatcaaggggaaggcgtcgt 301
Query: 285 -caacggcgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccg 343
| |||||||||||| |||||||||||||| |||| ||| ||| | ||||||||| |||
Sbjct: 302 cctccggcgggctcaccgtgttcgcgccgccggacaacgcgttcgcggcgctccccaccg 361
Query: 344 gcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 403
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcaccctcaacaagctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 421
Query: 404 ccgcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggctg 463
||||| ||||||| |||||| |||| ||||||||||||||||| ||||||||||| |
Sbjct: 422 ccgcgctgctccccatggcgcagttcgacaccgtcagcaacccgctccggacgcaggccg 481
Query: 464 gcgacaccggcaggggcaagtacccgctcaacctcaccgcggacggctccagcgtcaacg 523
|||| |||| | |||||||||||||||||| ||||||| || |||||| |||| |||
Sbjct: 482 gcgagaccgccgccggcaagtacccgctcaacgtcaccgccgagggctcccgcgtgaaca 541
Query: 524 tctccacgggggtcgtcaacgccacgctcgacgccacgccgctttacgccggggacaggc 583
||||||| || |||||||||||||| ||||| || |||| ||| |||| ||| | |
Sbjct: 542 tctccaccggcgtcgtcaacgccaccgtcgacaaca---cgctctactccggcgaccgcc 598
Query: 584 tcgtcgtctaccaggtcagcaaggtgctgctgccgtgggcgctctacggcccgccggtcc 643
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct: 599 tcgtcgtctaccaggtcgacaaggtgctgctgccgtgggcgctctacggcccgcccgtgc 658
Query: 644 ccgcgccggccccttccccggcgga 668
|||||||||| || || ||||||||
Sbjct: 659 ccgcgccggcgccgtcgccggcgga 683
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0099P06, complete sequence
Length = 135117
Score = 430 bits (217), Expect = e-118
Identities = 434/505 (85%), Gaps = 6/505 (1%)
Strand = Plus / Minus
Query: 167 cgcccaagaccatcacggcgatcctgagcaaggccgggcagttcaccaagttcctccagc 226
|||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 78662 cgccgaagacgatcacggcgatcctgaccaaggccggtcagttcaccaagttcctccagc 78603
Query: 227 tgctgcagtcgacgcgggaggcggagcagatcaccaaccagctcaagggcaagccgtc-- 284
| ||||||||||||| || | |||||||||| ||||||| ||||||| ||| ||||
Sbjct: 78602 tactgcagtcgacgcaggccggcgagcagatcaacaaccagatcaaggggaaggcgtcgt 78543
Query: 285 -caacggcgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccg 343
| |||||||||||| |||||||||||||| |||| ||| ||| | ||||||||| |||
Sbjct: 78542 cctccggcgggctcaccgtgttcgcgccgccggacaacgcgttcgcggcgctccccaccg 78483
Query: 344 gcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 403
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78482 gcaccctcaacaagctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 78423
Query: 404 ccgcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggctg 463
||||| ||||||| |||||| |||| ||||||||||||||||| ||||||||||| |
Sbjct: 78422 ccgcgctgctccccatggcgcagttcgacaccgtcagcaacccgctccggacgcaggccg 78363
Query: 464 gcgacaccggcaggggcaagtacccgctcaacctcaccgcggacggctccagcgtcaacg 523
|||| |||| | |||||||||||||||||| ||||||| || |||||| |||| |||
Sbjct: 78362 gcgagaccgccgccggcaagtacccgctcaacgtcaccgccgagggctcccgcgtgaaca 78303
Query: 524 tctccacgggggtcgtcaacgccacgctcgacgccacgccgctttacgccggggacaggc 583
||||||| || |||||||||||||| ||||| || |||| ||| |||| ||| | |
Sbjct: 78302 tctccaccggcgtcgtcaacgccaccgtcgacaaca---cgctctactccggcgaccgcc 78246
Query: 584 tcgtcgtctaccaggtcagcaaggtgctgctgccgtgggcgctctacggcccgccggtcc 643
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct: 78245 tcgtcgtctaccaggtcgacaaggtgctgctgccgtgggcgctctacggcccgcccgtgc 78186
Query: 644 ccgcgccggccccttccccggcgga 668
|||||||||| || || ||||||||
Sbjct: 78185 ccgcgccggcgccgtcgccggcgga 78161
>ref|XM_475645.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 798
Score = 430 bits (217), Expect = e-118
Identities = 434/505 (85%), Gaps = 6/505 (1%)
Strand = Plus / Plus
Query: 167 cgcccaagaccatcacggcgatcctgagcaaggccgggcagttcaccaagttcctccagc 226
|||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 119 cgccgaagacgatcacggcgatcctgaccaaggccggtcagttcaccaagttcctccagc 178
Query: 227 tgctgcagtcgacgcgggaggcggagcagatcaccaaccagctcaagggcaagccgtc-- 284
| ||||||||||||| || | |||||||||| ||||||| ||||||| ||| ||||
Sbjct: 179 tactgcagtcgacgcaggccggcgagcagatcaacaaccagatcaaggggaaggcgtcgt 238
Query: 285 -caacggcgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccg 343
| |||||||||||| |||||||||||||| |||| ||| ||| | ||||||||| |||
Sbjct: 239 cctccggcgggctcaccgtgttcgcgccgccggacaacgcgttcgcggcgctccccaccg 298
Query: 344 gcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 403
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gcaccctcaacaagctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 358
Query: 404 ccgcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggctg 463
||||| ||||||| |||||| |||| ||||||||||||||||| ||||||||||| |
Sbjct: 359 ccgcgctgctccccatggcgcagttcgacaccgtcagcaacccgctccggacgcaggccg 418
Query: 464 gcgacaccggcaggggcaagtacccgctcaacctcaccgcggacggctccagcgtcaacg 523
|||| |||| | |||||||||||||||||| ||||||| || |||||| |||| |||
Sbjct: 419 gcgagaccgccgccggcaagtacccgctcaacgtcaccgccgagggctcccgcgtgaaca 478
Query: 524 tctccacgggggtcgtcaacgccacgctcgacgccacgccgctttacgccggggacaggc 583
||||||| || |||||||||||||| ||||| || |||| ||| |||| ||| | |
Sbjct: 479 tctccaccggcgtcgtcaacgccaccgtcgacaaca---cgctctactccggcgaccgcc 535
Query: 584 tcgtcgtctaccaggtcagcaaggtgctgctgccgtgggcgctctacggcccgccggtcc 643
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct: 536 tcgtcgtctaccaggtcgacaaggtgctgctgccgtgggcgctctacggcccgcccgtgc 595
Query: 644 ccgcgccggccccttccccggcgga 668
|||||||||| || || ||||||||
Sbjct: 596 ccgcgccggcgccgtcgccggcgga 620
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 430 bits (217), Expect = e-118
Identities = 434/505 (85%), Gaps = 6/505 (1%)
Strand = Plus / Minus
Query: 167 cgcccaagaccatcacggcgatcctgagcaaggccgggcagttcaccaagttcctccagc 226
|||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 2746703 cgccgaagacgatcacggcgatcctgaccaaggccggtcagttcaccaagttcctccagc 2746644
Query: 227 tgctgcagtcgacgcgggaggcggagcagatcaccaaccagctcaagggcaagccgtc-- 284
| ||||||||||||| || | |||||||||| ||||||| ||||||| ||| ||||
Sbjct: 2746643 tactgcagtcgacgcaggccggcgagcagatcaacaaccagatcaaggggaaggcgtcgt 2746584
Query: 285 -caacggcgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccg 343
| |||||||||||| |||||||||||||| |||| ||| ||| | ||||||||| |||
Sbjct: 2746583 cctccggcgggctcaccgtgttcgcgccgccggacaacgcgttcgcggcgctccccaccg 2746524
Query: 344 gcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 403
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2746523 gcaccctcaacaagctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 2746464
Query: 404 ccgcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggctg 463
||||| ||||||| |||||| |||| ||||||||||||||||| ||||||||||| |
Sbjct: 2746463 ccgcgctgctccccatggcgcagttcgacaccgtcagcaacccgctccggacgcaggccg 2746404
Query: 464 gcgacaccggcaggggcaagtacccgctcaacctcaccgcggacggctccagcgtcaacg 523
|||| |||| | |||||||||||||||||| ||||||| || |||||| |||| |||
Sbjct: 2746403 gcgagaccgccgccggcaagtacccgctcaacgtcaccgccgagggctcccgcgtgaaca 2746344
Query: 524 tctccacgggggtcgtcaacgccacgctcgacgccacgccgctttacgccggggacaggc 583
||||||| || |||||||||||||| ||||| || |||| ||| |||| ||| | |
Sbjct: 2746343 tctccaccggcgtcgtcaacgccaccgtcgacaaca---cgctctactccggcgaccgcc 2746287
Query: 584 tcgtcgtctaccaggtcagcaaggtgctgctgccgtgggcgctctacggcccgccggtcc 643
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct: 2746286 tcgtcgtctaccaggtcgacaaggtgctgctgccgtgggcgctctacggcccgcccgtgc 2746227
Query: 644 ccgcgccggccccttccccggcgga 668
|||||||||| || || ||||||||
Sbjct: 2746226 ccgcgccggcgccgtcgccggcgga 2746202
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 430 bits (217), Expect = e-118
Identities = 434/505 (85%), Gaps = 6/505 (1%)
Strand = Plus / Minus
Query: 167 cgcccaagaccatcacggcgatcctgagcaaggccgggcagttcaccaagttcctccagc 226
|||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 3656315 cgccgaagacgatcacggcgatcctgaccaaggccggtcagttcaccaagttcctccagc 3656256
Query: 227 tgctgcagtcgacgcgggaggcggagcagatcaccaaccagctcaagggcaagccgtc-- 284
| ||||||||||||| || | |||||||||| ||||||| ||||||| ||| ||||
Sbjct: 3656255 tactgcagtcgacgcaggccggcgagcagatcaacaaccagatcaaggggaaggcgtcgt 3656196
Query: 285 -caacggcgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccg 343
| |||||||||||| |||||||||||||| |||| ||| ||| | ||||||||| |||
Sbjct: 3656195 cctccggcgggctcaccgtgttcgcgccgccggacaacgcgttcgcggcgctccccaccg 3656136
Query: 344 gcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 403
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3656135 gcaccctcaacaagctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 3656076
Query: 404 ccgcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggctg 463
||||| ||||||| |||||| |||| ||||||||||||||||| ||||||||||| |
Sbjct: 3656075 ccgcgctgctccccatggcgcagttcgacaccgtcagcaacccgctccggacgcaggccg 3656016
Query: 464 gcgacaccggcaggggcaagtacccgctcaacctcaccgcggacggctccagcgtcaacg 523
|||| |||| | |||||||||||||||||| ||||||| || |||||| |||| |||
Sbjct: 3656015 gcgagaccgccgccggcaagtacccgctcaacgtcaccgccgagggctcccgcgtgaaca 3655956
Query: 524 tctccacgggggtcgtcaacgccacgctcgacgccacgccgctttacgccggggacaggc 583
||||||| || |||||||||||||| ||||| || |||| ||| |||| ||| | |
Sbjct: 3655955 tctccaccggcgtcgtcaacgccaccgtcgacaaca---cgctctactccggcgaccgcc 3655899
Query: 584 tcgtcgtctaccaggtcagcaaggtgctgctgccgtgggcgctctacggcccgccggtcc 643
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct: 3655898 tcgtcgtctaccaggtcgacaaggtgctgctgccgtgggcgctctacggcccgcccgtgc 3655839
Query: 644 ccgcgccggccccttccccggcgga 668
|||||||||| || || ||||||||
Sbjct: 3655838 ccgcgccggcgccgtcgccggcgga 3655814
Score = 42.1 bits (21), Expect = 0.43
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 517 gtcaacgtctccacgggggtcgtcaacgccacgctcg 553
|||||||||||||| || |||||| || |||||||||
Sbjct: 27827521 gtcaacgtctccaccggcgtcgtcgacaccacgctcg 27827557
>gb|AACV01010939.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010939, whole
genome shotgun sequence
Length = 15079
Score = 408 bits (206), Expect = e-111
Identities = 433/506 (85%), Gaps = 7/506 (1%)
Strand = Plus / Minus
Query: 167 cgcccaagaccatcacggcgatcctgagcaaggccgggcagttcaccaagttcctccagc 226
|||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 1562 cgccgaagacgatcacggcgatcctgaccaaggccggtcagttcaccaagttcctccagc 1503
Query: 227 tgctgcagtcgacgcgggaggcggagcagatcaccaaccagctcaagggcaagccgtc-- 284
| ||||||||||||| || | |||||||||| ||||||| ||||||| ||| ||||
Sbjct: 1502 tactgcagtcgacgcaggccggcgagcagatcaacaaccagatcaaggggaaggcgtcgt 1443
Query: 285 -caacggcgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccg 343
| |||||||||||| |||||||||||||| |||| ||| ||| | ||||||||| |||
Sbjct: 1442 cctccggcgggctcaccgtgttcgcgccgccggacaacgcgttcgcggcgctccccaccg 1383
Query: 344 gcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 403
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1382 gcaccctcaacaagctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 1323
Query: 404 cc-gcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggct 462
|| ||| ||||||| |||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 1322 ccggcgctgctccccatggcgcagttcgacaccgtcagcaacccgctccggacgcaggcc 1263
Query: 463 ggcgacaccggcaggggcaagtacccgctcaacctcaccgcggacggctccagcgtcaac 522
||||| |||| | |||||||||||||||||| ||||||| || |||||| |||| |||
Sbjct: 1262 ggcgagaccgccgccggcaagtacccgctcaacgtcaccgccgagggctcccgcgtgaac 1203
Query: 523 gtctccacgggggtcgtcaacgccacgctcgacgccacgccgctttacgccggggacagg 582
||||||| || |||||||||||||| ||||| || |||| ||| |||| ||| |
Sbjct: 1202 atctccaccggcgtcgtcaacgccaccgtcgacaaca---cgctctactccggcgaccgc 1146
Query: 583 ctcgtcgtctaccaggtcagcaaggtgctgctgccgtgggcgctctacggcccgccggtc 642
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct: 1145 ctcgtcgtctaccaggtcgacaaggtgctgctgccgtgggcgctttacggcccgcccgtg 1086
Query: 643 cccgcgccggccccttccccggcgga 668
||||||||||| || || ||||||||
Sbjct: 1085 cccgcgccggcgccgtcgccggcgga 1060
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 408 bits (206), Expect = e-111
Identities = 433/506 (85%), Gaps = 7/506 (1%)
Strand = Plus / Minus
Query: 167 cgcccaagaccatcacggcgatcctgagcaaggccgggcagttcaccaagttcctccagc 226
|||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 3651237 cgccgaagacgatcacggcgatcctgaccaaggccggtcagttcaccaagttcctccagc 3651178
Query: 227 tgctgcagtcgacgcgggaggcggagcagatcaccaaccagctcaagggcaagccgtc-- 284
| ||||||||||||| || | |||||||||| ||||||| ||||||| ||| ||||
Sbjct: 3651177 tactgcagtcgacgcaggccggcgagcagatcaacaaccagatcaaggggaaggcgtcgt 3651118
Query: 285 -caacggcgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccg 343
| |||||||||||| |||||||||||||| |||| ||| ||| | ||||||||| |||
Sbjct: 3651117 cctccggcgggctcaccgtgttcgcgccgccggacaacgcgttcgcggcgctccccaccg 3651058
Query: 344 gcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 403
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3651057 gcaccctcaacaagctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 3650998
Query: 404 cc-gcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggct 462
|| ||| ||||||| |||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 3650997 ccggcgctgctccccatggcgcagttcgacaccgtcagcaacccgctccggacgcaggcc 3650938
Query: 463 ggcgacaccggcaggggcaagtacccgctcaacctcaccgcggacggctccagcgtcaac 522
||||| |||| | |||||||||||||||||| ||||||| || |||||| |||| |||
Sbjct: 3650937 ggcgagaccgccgccggcaagtacccgctcaacgtcaccgccgagggctcccgcgtgaac 3650878
Query: 523 gtctccacgggggtcgtcaacgccacgctcgacgccacgccgctttacgccggggacagg 582
||||||| || |||||||||||||| ||||| || |||| ||| |||| ||| |
Sbjct: 3650877 atctccaccggcgtcgtcaacgccaccgtcgacaaca---cgctctactccggcgaccgc 3650821
Query: 583 ctcgtcgtctaccaggtcagcaaggtgctgctgccgtgggcgctctacggcccgccggtc 642
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct: 3650820 ctcgtcgtctaccaggtcgacaaggtgctgctgccgtgggcgctttacggcccgcccgtg 3650761
Query: 643 cccgcgccggccccttccccggcgga 668
||||||||||| || || ||||||||
Sbjct: 3650760 cccgcgccggcgccgtcgccggcgga 3650735
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 408 bits (206), Expect = e-111
Identities = 433/506 (85%), Gaps = 7/506 (1%)
Strand = Plus / Minus
Query: 167 cgcccaagaccatcacggcgatcctgagcaaggccgggcagttcaccaagttcctccagc 226
|||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 3651237 cgccgaagacgatcacggcgatcctgaccaaggccggtcagttcaccaagttcctccagc 3651178
Query: 227 tgctgcagtcgacgcgggaggcggagcagatcaccaaccagctcaagggcaagccgtc-- 284
| ||||||||||||| || | |||||||||| ||||||| ||||||| ||| ||||
Sbjct: 3651177 tactgcagtcgacgcaggccggcgagcagatcaacaaccagatcaaggggaaggcgtcgt 3651118
Query: 285 -caacggcgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccg 343
| |||||||||||| |||||||||||||| |||| ||| ||| | ||||||||| |||
Sbjct: 3651117 cctccggcgggctcaccgtgttcgcgccgccggacaacgcgttcgcggcgctccccaccg 3651058
Query: 344 gcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 403
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3651057 gcaccctcaacaagctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 3650998
Query: 404 cc-gcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggct 462
|| ||| ||||||| |||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 3650997 ccggcgctgctccccatggcgcagttcgacaccgtcagcaacccgctccggacgcaggcc 3650938
Query: 463 ggcgacaccggcaggggcaagtacccgctcaacctcaccgcggacggctccagcgtcaac 522
||||| |||| | |||||||||||||||||| ||||||| || |||||| |||| |||
Sbjct: 3650937 ggcgagaccgccgccggcaagtacccgctcaacgtcaccgccgagggctcccgcgtgaac 3650878
Query: 523 gtctccacgggggtcgtcaacgccacgctcgacgccacgccgctttacgccggggacagg 582
||||||| || |||||||||||||| ||||| || |||| ||| |||| ||| |
Sbjct: 3650877 atctccaccggcgtcgtcaacgccaccgtcgacaaca---cgctctactccggcgaccgc 3650821
Query: 583 ctcgtcgtctaccaggtcagcaaggtgctgctgccgtgggcgctctacggcccgccggtc 642
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct: 3650820 ctcgtcgtctaccaggtcgacaaggtgctgctgccgtgggcgctttacggcccgcccgtg 3650761
Query: 643 cccgcgccggccccttccccggcgga 668
||||||||||| || || ||||||||
Sbjct: 3650760 cccgcgccggcgccgtcgccggcgga 3650735
Score = 42.1 bits (21), Expect = 0.43
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 517 gtcaacgtctccacgggggtcgtcaacgccacgctcg 553
|||||||||||||| || |||||| || |||||||||
Sbjct: 27576488 gtcaacgtctccaccggcgtcgtcgacaccacgctcg 27576524
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0433F09
Length = 150150
Score = 125 bits (63), Expect = 4e-026
Identities = 144/171 (84%)
Strand = Plus / Minus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||||| ||||||||||||||| | |||| ||| ||| | |||||||| ||||||||||
Sbjct: 65173 cgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgct 65114
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || |||||||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct: 65113 caactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgctgtccacgct 65054
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
| ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 65053 gatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 65003
>dbj|AK108308.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F08, full
insert sequence
Length = 746
Score = 125 bits (63), Expect = 4e-026
Identities = 144/171 (84%)
Strand = Plus / Plus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||||| ||||||||||||||| | |||| ||| ||| | |||||||| ||||||||||
Sbjct: 28 cgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgct 87
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || |||||||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct: 88 caactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgctgtccacgct 147
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
| ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 148 gatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 198
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0041E11
Length = 146335
Score = 125 bits (63), Expect = 4e-026
Identities = 144/171 (84%)
Strand = Plus / Minus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||||| ||||||||||||||| | |||| ||| ||| | |||||||| ||||||||||
Sbjct: 40921 cgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgct 40862
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || |||||||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct: 40861 caactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgctgtccacgct 40802
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
| ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 40801 gatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 40751
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 125 bits (63), Expect = 4e-026
Identities = 144/171 (84%)
Strand = Plus / Minus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||||| ||||||||||||||| | |||| ||| ||| | |||||||| ||||||||||
Sbjct: 3094935 cgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgct 3094876
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || |||||||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct: 3094875 caactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgctgtccacgct 3094816
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
| ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 3094815 gatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 3094765
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 730 gcggcggggacgacgacggcg 750
|||||||||||||||||||||
Sbjct: 23426762 gcggcggggacgacgacggcg 23426782
>ref|XM_550213.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 810
Score = 125 bits (63), Expect = 4e-026
Identities = 144/171 (84%)
Strand = Plus / Plus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||||| ||||||||||||||| | |||| ||| ||| | |||||||| ||||||||||
Sbjct: 270 cgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgct 329
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || |||||||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct: 330 caactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgctgtccacgct 389
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
| ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 390 gatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 440
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 125 bits (63), Expect = 4e-026
Identities = 144/171 (84%)
Strand = Plus / Minus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||||| ||||||||||||||| | |||| ||| ||| | |||||||| ||||||||||
Sbjct: 3094935 cgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgct 3094876
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || |||||||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct: 3094875 caactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgctgtccacgct 3094816
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
| ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 3094815 gatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 3094765
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 125 bits (63), Expect = 4e-026
Identities = 144/171 (84%)
Strand = Plus / Minus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||||| ||||||||||||||| | |||| ||| ||| | |||||||| ||||||||||
Sbjct: 3097133 cgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgct 3097074
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || |||||||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct: 3097073 caactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgctgtccacgct 3097014
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
| ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 3097013 gatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 3096963
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 730 gcggcggggacgacgacggcg 750
|||||||||||||||||||||
Sbjct: 23348045 gcggcggggacgacgacggcg 23348065
>gb|AQ872562.1|AQ872562 nbeb0051D10r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0051D10r, DNA sequence
Length = 740
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||||| ||||||||||||||| | |||| ||| ||| | |||||||| ||||||||||
Sbjct: 439 cgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgct 498
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgt 398
|||||| || |||||||||||||| | ||||||||||||| ||||||
Sbjct: 499 caactcgctgtccgaccagcagaaaaactcgctggtgcagtaccacgt 546
>gb|AACV01000238.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000238, whole
genome shotgun sequence
Length = 20621
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 342 cggcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgt 401
||||||||||||||| || |||||||||||||||| ||||||||||||| |||||| |
Sbjct: 20601 cggcacgctcaactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgct 20542
Query: 402 gtccgcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
|||| || | ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 20541 gtccacgctgatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 20482
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 342 cggcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgt 401
||||||||||||||| || |||||||||||||||| ||||||||||||| |||||| |
Sbjct: 3169503 cggcacgctcaactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgct 3169444
Query: 402 gtccgcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
|||| || | ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 3169443 gtccacgctgatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 3169384
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 342 cggcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgt 401
||||||||||||||| || |||||||||||||||| ||||||||||||| |||||| |
Sbjct: 3169503 cggcacgctcaactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgct 3169444
Query: 402 gtccgcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
|||| || | ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 3169443 gtccacgctgatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 3169384
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 730 gcggcggggacgacgacggcg 750
|||||||||||||||||||||
Sbjct: 22893706 gcggcggggacgacgacggcg 22893726
>gb|AU174266.1|AU174266 AU174266 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2583, mRNA sequence
Length = 473
Score = 93.7 bits (47), Expect = 1e-016
Identities = 86/99 (86%)
Strand = Plus / Plus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||||| ||||||||||||||| | |||| ||| ||| | |||||||| ||||||||||
Sbjct: 375 cgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgct 434
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgca 389
|||||| || |||||||||||||||| |||||||||||
Sbjct: 435 caactcgctgtccgaccagcagaagaactcgctggtgca 473
>gb|AC118671.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0050D18, *** SEQUENCING IN PROGRESS ***, 10
unordered pieces
Length = 117605
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 66 cctcgccgccgcccttctcctcgccgtcg 94
||||||||||||||| ||| |||||||||
Sbjct: 72837 cctcgccgccgccctcctcgtcgccgtcg 72865
>dbj|AK058880.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B05,
full insert sequence
Length = 1363
Score = 42.1 bits (21), Expect = 0.43
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 64 cgcctcgccgccgcccttctcctcgccgtcgtc 96
||||||||||||||||| |||||| |||||||
Sbjct: 67 cgcctcgccgccgccctcctcctcctcgtcgtc 99
>dbj|AK067497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110O11, full
insert sequence
Length = 738
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 66 cctcgccgccgcccttctcctcgccgtcg 94
||||||||||||||| ||| |||||||||
Sbjct: 150 cctcgccgccgccctcctcgtcgccgtcg 178
>dbj|AK109868.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A07, full
insert sequence
Length = 2369
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 64 cgcctcgccgccgcccttctc 84
|||||||||||||||||||||
Sbjct: 371 cgcctcgccgccgcccttctc 351
>dbj|AK111283.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H06, full
insert sequence
Length = 987
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 105 gagagcaagaagaagaagaag 125
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
sequence
Length = 144487
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 29681 gagagcaagaagaagaagaag 29701
>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0050D18, complete sequence
Length = 126350
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 66 cctcgccgccgcccttctcctcgccgtcg 94
||||||||||||||| ||| |||||||||
Sbjct: 69317 cctcgccgccgccctcctcgtcgccgtcg 69289
>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0711H09
Length = 185858
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 64 cgcctcgccgccgcccttctc 84
|||||||||||||||||||||
Sbjct: 122676 cgcctcgccgccgcccttctc 122656
>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1115_D03
Length = 169378
Score = 42.1 bits (21), Expect = 0.43
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 64 cgcctcgccgccgcccttctcctcgccgtcgtc 96
||||||||||||||||| |||||| |||||||
Sbjct: 97612 cgcctcgccgccgccctcctcctcctcgtcgtc 97644
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0053D02, complete sequence
Length = 157106
Score = 42.1 bits (21), Expect = 0.43
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 517 gtcaacgtctccacgggggtcgtcaacgccacgctcg 553
|||||||||||||| || |||||| || |||||||||
Sbjct: 57938 gtcaacgtctccaccggcgtcgtcgacaccacgctcg 57974
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1103C09
Length = 163996
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 730 gcggcggggacgacgacggcg 750
|||||||||||||||||||||
Sbjct: 73743 gcggcggggacgacgacggcg 73763
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0451D05
Length = 148381
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 730 gcggcggggacgacgacggcg 750
|||||||||||||||||||||
Sbjct: 134787 gcggcggggacgacgacggcg 134807
>gb|AACV01001740.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001740, whole
genome shotgun sequence
Length = 14905
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 730 gcggcggggacgacgacggcg 750
|||||||||||||||||||||
Sbjct: 9720 gcggcggggacgacgacggcg 9740
>gb|AACV01003920.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003920, whole
genome shotgun sequence
Length = 3553
Score = 42.1 bits (21), Expect = 0.43
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 64 cgcctcgccgccgcccttctcctcgccgtcgtc 96
||||||||||||||||| |||||| |||||||
Sbjct: 1587 cgcctcgccgccgccctcctcctcctcgtcgtc 1619
>gb|AACV01006570.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006570,
whole genome shotgun sequence
Length = 1972
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 66 cctcgccgccgcccttctcctcgccgtcg 94
||||||||||||||| ||| |||||||||
Sbjct: 164 cctcgccgccgccctcctcgtcgccgtcg 136
>gb|AACV01008115.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008115, whole
genome shotgun sequence
Length = 32704
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 5241 gagagcaagaagaagaagaag 5221
>gb|AACV01012714.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012714, whole
genome shotgun sequence
Length = 22278
Score = 42.1 bits (21), Expect = 0.43
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 517 gtcaacgtctccacgggggtcgtcaacgccacgctcg 553
|||||||||||||| || |||||| || |||||||||
Sbjct: 19554 gtcaacgtctccaccggcgtcgtcgacaccacgctcg 19590
>gb|AACV01018845.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018845, whole
genome shotgun sequence
Length = 37594
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 cgcctcgccgccgcccttctc 84
|||||||||||||||||||||
Sbjct: 6694 cgcctcgccgccgcccttctc 6714
>ref|NM_192623.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1509
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 730 gcggcggggacgacgacggcg 750
|||||||||||||||||||||
Sbjct: 89 gcggcggggacgacgacggcg 109
>ref|XM_464982.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1363
Score = 42.1 bits (21), Expect = 0.43
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 64 cgcctcgccgccgcccttctcctcgccgtcgtc 96
||||||||||||||||| |||||| |||||||
Sbjct: 67 cgcctcgccgccgccctcctcctcctcgtcgtc 99
>ref|XM_483328.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2369
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 64 cgcctcgccgccgcccttctc 84
|||||||||||||||||||||
Sbjct: 371 cgcctcgccgccgcccttctc 351
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 730 gcggcggggacgacgacggcg 750
|||||||||||||||||||||
Sbjct: 6344994 gcggcggggacgacgacggcg 6345014
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 2394258 gagagcaagaagaagaagaag 2394238
>ref|NT_107221.1| Oryza sativa (japonica cultivar-group)
Length = 824362
Score = 42.1 bits (21), Expect = 0.43
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 517 gtcaacgtctccacgggggtcgtcaacgccacgctcg 553
|||||||||||||| || |||||| || |||||||||
Sbjct: 423651 gtcaacgtctccaccggcgtcgtcgacaccacgctcg 423687
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 66 cctcgccgccgcccttctcctcgccgtcg 94
||||||||||||||| ||| |||||||||
Sbjct: 4057124 cctcgccgccgccctcctcgtcgccgtcg 4057096
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 42.1 bits (21), Expect = 0.43
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 64 cgcctcgccgccgcccttctcctcgccgtcgtc 96
||||||||||||||||| |||||| |||||||
Sbjct: 4791083 cgcctcgccgccgccctcctcctcctcgtcgtc 4791115
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 64 cgcctcgccgccgcccttctc 84
|||||||||||||||||||||
Sbjct: 25253273 cgcctcgccgccgcccttctc 25253253
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 64 cgcctcgccgccgcccttctc 84
|||||||||||||||||||||
Sbjct: 16744110 cgcctcgccgccgcccttctc 16744090
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 42.1 bits (21), Expect = 0.43
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 517 gtcaacgtctccacgggggtcgtcaacgccacgctcg 553
|||||||||||||| || |||||| || |||||||||
Sbjct: 10276175 gtcaacgtctccaccggcgtcgtcgacaccacgctcg 10276211
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 6936737 gagagcaagaagaagaagaag 6936717
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,808,875
Number of Sequences: 438736
Number of extensions: 1808875
Number of successful extensions: 61447
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57394
Number of HSP's gapped (non-prelim): 4036
length of query: 753
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 732
effective length of database: 2,791,206,460
effective search space: 2043163128720
effective search space used: 2043163128720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)