BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635646.2.1
(573 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK063693.1| Oryza sativa (japonica cultivar-group) cDNA... 222 2e-055
dbj|AP004341.2| Oryza sativa (japonica cultivar-group) geno... 222 2e-055
gb|AACV01016819.1| Oryza sativa (japonica cultivar-group) c... 222 2e-055
ref|XM_479191.1| Oryza sativa (japonica cultivar-group), mRNA 222 2e-055
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 222 2e-055
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 222 2e-055
gb|AU184844.1|AU184844 AU184844 Rice cDNA from young root O... 92 4e-016
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 42 0.32
dbj|AP003634.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
gb|AACV01014899.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
dbj|AP003621.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 42 0.32
>dbj|AK063693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F11, full
insert sequence
Length = 709
Score = 222 bits (112), Expect = 2e-055
Identities = 223/260 (85%)
Strand = Plus / Plus
Query: 8 ctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctgag 67
||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||
Sbjct: 246 ctccccaagatcgactggcccgcgctcgtcgccgccacccaggccctcggcctcccggag 305
Query: 68 ctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacgtc 127
||||||||||||| || ||| |||| | ||| ||| |||||| |||||||||| || |
Sbjct: 306 ctcctccccgaggcgccccccaccgacgccgagctctccgccgagggcgccgccgccgac 365
Query: 128 gagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagggc 187
||||| ||||| |||||||| |||||| ||||||||||||| | || || ||||||||
Sbjct: 366 gagggcagcgcgctccgccgcctccaccgcgcgctcctcgagatccacatcgaggagggc 425
Query: 188 tccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaacatg 247
|||||||||||||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct: 426 gccctcgtctgccccgacaccgaccgctgcttccccatctccaggggcgtccccaacatg 485
Query: 248 atgctccacgaggacgaggt 267
| |||||||||||||||||
Sbjct: 486 ctcctccacgaggacgaggt 505
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0524E08
Length = 154696
Score = 222 bits (112), Expect = 2e-055
Identities = 223/260 (85%)
Strand = Plus / Minus
Query: 8 ctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctgag 67
||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||
Sbjct: 38568 ctccccaagatcgactggcccgcgctcgtcgccgccacccaggccctcggcctcccggag 38509
Query: 68 ctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacgtc 127
||||||||||||| || ||| |||| | ||| ||| |||||| |||||||||| || |
Sbjct: 38508 ctcctccccgaggcgccccccaccgacgccgagctctccgccgagggcgccgccgccgac 38449
Query: 128 gagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagggc 187
||||| ||||| |||||||| |||||| ||||||||||||| | || || ||||||||
Sbjct: 38448 gagggcagcgcgctccgccgcctccaccgcgcgctcctcgagatccacatcgaggagggc 38389
Query: 188 tccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaacatg 247
|||||||||||||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct: 38388 gccctcgtctgccccgacaccgaccgctgcttccccatctccaggggcgtccccaacatg 38329
Query: 248 atgctccacgaggacgaggt 267
| |||||||||||||||||
Sbjct: 38328 ctcctccacgaggacgaggt 38309
>gb|AACV01016819.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016819, whole
genome shotgun sequence
Length = 47105
Score = 222 bits (112), Expect = 2e-055
Identities = 223/260 (85%)
Strand = Plus / Plus
Query: 8 ctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctgag 67
||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||
Sbjct: 26760 ctccccaagatcgactggcccgcgctcgtcgccgccacccaggccctcggcctcccggag 26819
Query: 68 ctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacgtc 127
||||||||||||| || ||| |||| | ||| ||| |||||| |||||||||| || |
Sbjct: 26820 ctcctccccgaggcgccccccaccgacgccgagctctccgccgagggcgccgccgccgac 26879
Query: 128 gagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagggc 187
||||| ||||| |||||||| |||||| ||||||||||||| | || || ||||||||
Sbjct: 26880 gagggcagcgcgctccgccgcctccaccgcgcgctcctcgagatccacatcgaggagggc 26939
Query: 188 tccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaacatg 247
|||||||||||||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct: 26940 gccctcgtctgccccgacaccgaccgctgcttccccatctccaggggcgtccccaacatg 26999
Query: 248 atgctccacgaggacgaggt 267
| |||||||||||||||||
Sbjct: 27000 ctcctccacgaggacgaggt 27019
>ref|XM_479191.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 709
Score = 222 bits (112), Expect = 2e-055
Identities = 223/260 (85%)
Strand = Plus / Plus
Query: 8 ctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctgag 67
||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||
Sbjct: 246 ctccccaagatcgactggcccgcgctcgtcgccgccacccaggccctcggcctcccggag 305
Query: 68 ctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacgtc 127
||||||||||||| || ||| |||| | ||| ||| |||||| |||||||||| || |
Sbjct: 306 ctcctccccgaggcgccccccaccgacgccgagctctccgccgagggcgccgccgccgac 365
Query: 128 gagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagggc 187
||||| ||||| |||||||| |||||| ||||||||||||| | || || ||||||||
Sbjct: 366 gagggcagcgcgctccgccgcctccaccgcgcgctcctcgagatccacatcgaggagggc 425
Query: 188 tccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaacatg 247
|||||||||||||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct: 426 gccctcgtctgccccgacaccgaccgctgcttccccatctccaggggcgtccccaacatg 485
Query: 248 atgctccacgaggacgaggt 267
| |||||||||||||||||
Sbjct: 486 ctcctccacgaggacgaggt 505
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 222 bits (112), Expect = 2e-055
Identities = 223/260 (85%)
Strand = Plus / Minus
Query: 8 ctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctgag 67
||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||
Sbjct: 13334411 ctccccaagatcgactggcccgcgctcgtcgccgccacccaggccctcggcctcccggag 13334352
Query: 68 ctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacgtc 127
||||||||||||| || ||| |||| | ||| ||| |||||| |||||||||| || |
Sbjct: 13334351 ctcctccccgaggcgccccccaccgacgccgagctctccgccgagggcgccgccgccgac 13334292
Query: 128 gagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagggc 187
||||| ||||| |||||||| |||||| ||||||||||||| | || || ||||||||
Sbjct: 13334291 gagggcagcgcgctccgccgcctccaccgcgcgctcctcgagatccacatcgaggagggc 13334232
Query: 188 tccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaacatg 247
|||||||||||||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct: 13334231 gccctcgtctgccccgacaccgaccgctgcttccccatctccaggggcgtccccaacatg 13334172
Query: 248 atgctccacgaggacgaggt 267
| |||||||||||||||||
Sbjct: 13334171 ctcctccacgaggacgaggt 13334152
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 222 bits (112), Expect = 2e-055
Identities = 223/260 (85%)
Strand = Plus / Minus
Query: 8 ctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctgag 67
||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||
Sbjct: 11179027 ctccccaagatcgactggcccgcgctcgtcgccgccacccaggccctcggcctcccggag 11178968
Query: 68 ctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacgtc 127
||||||||||||| || ||| |||| | ||| ||| |||||| |||||||||| || |
Sbjct: 11178967 ctcctccccgaggcgccccccaccgacgccgagctctccgccgagggcgccgccgccgac 11178908
Query: 128 gagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagggc 187
||||| ||||| |||||||| |||||| ||||||||||||| | || || ||||||||
Sbjct: 11178907 gagggcagcgcgctccgccgcctccaccgcgcgctcctcgagatccacatcgaggagggc 11178848
Query: 188 tccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaacatg 247
|||||||||||||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct: 11178847 gccctcgtctgccccgacaccgaccgctgcttccccatctccaggggcgtccccaacatg 11178788
Query: 248 atgctccacgaggacgaggt 267
| |||||||||||||||||
Sbjct: 11178787 ctcctccacgaggacgaggt 11178768
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 222 bits (112), Expect = 2e-055
Identities = 223/260 (85%)
Strand = Plus / Minus
Query: 8 ctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctgag 67
||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||
Sbjct: 24578466 ctccccaagatcgactggcccgcgctcgtcgccgccacccaggccctcggcctcccggag 24578407
Query: 68 ctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacgtc 127
||||||||||||| || ||| |||| | ||| ||| |||||| |||||||||| || |
Sbjct: 24578406 ctcctccccgaggcgccccccaccgacgccgagctctccgccgagggcgccgccgccgac 24578347
Query: 128 gagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagggc 187
||||| ||||| |||||||| |||||| ||||||||||||| | || || ||||||||
Sbjct: 24578346 gagggcagcgcgctccgccgcctccaccgcgcgctcctcgagatccacatcgaggagggc 24578287
Query: 188 tccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaacatg 247
|||||||||||||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct: 24578286 gccctcgtctgccccgacaccgaccgctgcttccccatctccaggggcgtccccaacatg 24578227
Query: 248 atgctccacgaggacgaggt 267
| |||||||||||||||||
Sbjct: 24578226 ctcctccacgaggacgaggt 24578207
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 222 bits (112), Expect = 2e-055
Identities = 223/260 (85%)
Strand = Plus / Minus
Query: 8 ctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctgag 67
||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||
Sbjct: 25721406 ctccccaagatcgactggcccgcgctcgtcgccgccacccaggccctcggcctcccggag 25721347
Query: 68 ctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacgtc 127
||||||||||||| || ||| |||| | ||| ||| |||||| |||||||||| || |
Sbjct: 25721346 ctcctccccgaggcgccccccaccgacgccgagctctccgccgagggcgccgccgccgac 25721287
Query: 128 gagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagggc 187
||||| ||||| |||||||| |||||| ||||||||||||| | || || ||||||||
Sbjct: 25721286 gagggcagcgcgctccgccgcctccaccgcgcgctcctcgagatccacatcgaggagggc 25721227
Query: 188 tccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaacatg 247
|||||||||||||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct: 25721226 gccctcgtctgccccgacaccgaccgctgcttccccatctccaggggcgtccccaacatg 25721167
Query: 248 atgctccacgaggacgaggt 267
| |||||||||||||||||
Sbjct: 25721166 ctcctccacgaggacgaggt 25721147
>gb|AU184844.1|AU184844 AU184844 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10348, mRNA sequence
Length = 427
Score = 91.7 bits (46), Expect = 4e-016
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 8 ctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctgag 67
||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||
Sbjct: 355 ctccccaagatcgactggcccgcgctcgtcgccgccacccaggccctcggcctcccggag 414
Query: 68 ctcctccccgagg 80
||||| |||||||
Sbjct: 415 ctcctncccgagg 427
>ref|NT_107234.1| Oryza sativa (japonica cultivar-group)
Length = 1126496
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tggcgcgcgctcgtcgccgccaccc 47
|||| ||||||||||||||||||||
Sbjct: 605296 tggctcgcgctcgtcgccgccaccc 605320
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0655A07
Length = 172473
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tggcgcgcgctcgtcgccgccaccc 47
|||| ||||||||||||||||||||
Sbjct: 19758 tggctcgcgctcgtcgccgccaccc 19782
>gb|AACV01014899.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014899, whole
genome shotgun sequence
Length = 48705
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 23 tggcgcgcgctcgtcgccgccaccc 47
|||| ||||||||||||||||||||
Sbjct: 30019 tggctcgcgctcgtcgccgccaccc 29995
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0621D05
Length = 180250
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tggcgcgcgctcgtcgccgccaccc 47
|||| ||||||||||||||||||||
Sbjct: 166133 tggctcgcgctcgtcgccgccaccc 166157
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tggcgcgcgctcgtcgccgccaccc 47
|||| ||||||||||||||||||||
Sbjct: 10900097 tggctcgcgctcgtcgccgccaccc 10900121
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tggcgcgcgctcgtcgccgccaccc 47
|||| ||||||||||||||||||||
Sbjct: 28598834 tggctcgcgctcgtcgccgccaccc 28598858
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tggcgcgcgctcgtcgccgccaccc 47
|||| ||||||||||||||||||||
Sbjct: 29455252 tggctcgcgctcgtcgccgccaccc 29455276
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 975,806
Number of Sequences: 438736
Number of extensions: 975806
Number of successful extensions: 29753
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29399
Number of HSP's gapped (non-prelim): 354
length of query: 573
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 552
effective length of database: 2,791,206,460
effective search space: 1540745965920
effective search space used: 1540745965920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)