BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712941.2.1
(1473 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK061821.1| Oryza sativa (japonica cultivar-group) cDNA... 872 0.0
dbj|AK099102.1| Oryza sativa (japonica cultivar-group) cDNA... 872 0.0
ref|XM_450905.1| Oryza sativa (japonica cultivar-group), mRNA 872 0.0
ref|XM_506666.1| PREDICTED Oryza sativa (japonica cultivar-... 872 0.0
gb|CB654216.1|CB654216 OSJNEc06B10.f OSJNEc Oryza sativa (j... 781 0.0
gb|CB679364.1|CB679364 OSJNEf02M13.f OSJNEf Oryza sativa (j... 700 0.0
gb|CA755985.1|CA755985 BR030032000_PLATE_E03_21_021.ab1 OA ... 424 e-116
gb|CB654217.1|CB654217 OSJNEc06B10.r OSJNEc Oryza sativa (j... 404 e-110
gb|CB655408.1|CB655408 OSJNEc08M22.r OSJNEc Oryza sativa (j... 373 e-100
gb|CB679365.1|CB679365 OSJNEf02M13.r OSJNEf Oryza sativa (j... 349 3e-093
gb|D39787.1|D39787 RICS1380A Rice shoot Oryza sativa (japon... 345 4e-092
gb|C27470.1|C27470 C27470 Rice callus cDNA Oryza sativa (ja... 309 2e-081
dbj|AP005904.3| Oryza sativa (japonica cultivar-group) geno... 240 2e-060
dbj|AP006453.3| Oryza sativa (japonica cultivar-group) geno... 240 2e-060
gb|AACV01019900.1| Oryza sativa (japonica cultivar-group) c... 240 2e-060
ref|NT_107083.1| Oryza sativa (japonica cultivar-group) 240 2e-060
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 240 2e-060
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 240 2e-060
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 240 2e-060
gb|AQ916049.1|AQ916049 nbeb0061A10r CUGI Rice BAC Library (... 238 7e-060
dbj|AP005430.1| Oryza sativa (japonica cultivar-group) chro... 125 7e-026
gb|AACV01019899.1| Oryza sativa (japonica cultivar-group) c... 125 7e-026
gb|AACV01020446.1| Oryza sativa (japonica cultivar-group) c... 46 0.054
dbj|AP005314.2| Oryza sativa (japonica cultivar-group) geno... 46 0.054
dbj|AP005092.3| Oryza sativa (japonica cultivar-group) geno... 46 0.054
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 46 0.054
>dbj|AK061821.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B11, full
insert sequence
Length = 1298
Score = 872 bits (440), Expect = 0.0
Identities = 816/940 (86%), Gaps = 1/940 (0%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 108 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 167
Query: 92 cacaaggccttcaaagggtttggatgtgacagtacaacagggataaacatacttactcat 151
||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||
Sbjct: 168 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 227
Query: 152 cgcgattcggggcagcgtggactcattcaacaggaatacagggtctatgtatcatgagga 211
|| || ||| ||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 228 cgtgactcgatgcaacgcgcgctcattcaacaggaatacagga-ctatgtattctgagga 286
Query: 212 actctcccaccgtatttcatctgaactcagtggaaaccacaagaaagctatgtcgctgtg 271
||||| | |||||| |||||||||||||||||| ||||||||||||| ||| ||| ||
Sbjct: 287 tctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatg 346
Query: 272 gattcttgatcctgctggacgtgatgcaactgttttgagagaagctctaaatggtgacac 331
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||
Sbjct: 347 gattcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatac 406
Query: 332 tatggatctgagagcagccactgagattatatgttccaggacaccatcacagttgcaaat 391
||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct: 407 tattgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaat 466
Query: 392 aatgaaacagacttattatgctagattcggtacttatcttgagcatgacattgctcacca 451
|||||||||||||||| |||| | ||| ||||||||||||||||| ||||||| ||| |
Sbjct: 467 aatgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcg 526
Query: 452 cacatccggtgatcaccagaagcttttacttgcatatatggggattccacgctatgaagg 511
|||||| || || || |||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct: 527 cacatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaagg 586
Query: 512 tcccgaggttgatcctacaattgtgacacatgatgcaaaggatttgtacaaagctggtga 571
||| |||||||||||||| || |||||||| ||||||||||| | || |||||||||||
Sbjct: 587 tcctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtga 646
Query: 572 gaaaaggctgggtacggacgagaagatttttatccgtgttttcactgaacgcagttgggc 631
|||||||||||| || || ||||||| || ||||| |||||||||||||||| |||||
Sbjct: 647 gaaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggc 706
Query: 632 acacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggt 691
|||| ||||||||||| | ||||||||||||||||||||||| ||| | | ||||||||
Sbjct: 707 acacatggcatctgttgcctctgcttaccatcatatgtatgatcggtcactggagaaggt 766
Query: 692 tatcaagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgc 751
| | ||||||||||| ||||||||||||||| |||| || | |||||||||||||||||
Sbjct: 767 tgtgaagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgc 826
Query: 752 ggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcac 811
|| || ||||| ||||||||||| ||| |||| || ||| ||||||||||| | |||||
Sbjct: 827 tgagaatccagccaagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcac 886
Query: 812 tgatgacatgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatat 871
|||||| | |||||||||||||| || || || ||||| ||||| ||||||||||||||
Sbjct: 887 tgatgatagtacacttataagggttgtagtaacaaggactgagatcgacatgcaatatat 946
Query: 872 caaggcagagtacttgaagaagtataagaagccattagctgaggctatcaactccgagac 931
|||||| ||||||| ||||| || || || |||||||||| |||||| | ||||||||
Sbjct: 947 caaggctgagtactacaagaaatacaaaaaatcattagctgaagctatccattccgagac 1006
Query: 932 atcaggaaactatcggacgttccttctttcacttgttggt 971
|||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 1007 ctcaggaaattatcgaacattcctcctttctctagttggt 1046
>dbj|AK099102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033F23, full
insert sequence
Length = 1296
Score = 872 bits (440), Expect = 0.0
Identities = 816/940 (86%), Gaps = 1/940 (0%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 106 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 165
Query: 92 cacaaggccttcaaagggtttggatgtgacagtacaacagggataaacatacttactcat 151
||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||
Sbjct: 166 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 225
Query: 152 cgcgattcggggcagcgtggactcattcaacaggaatacagggtctatgtatcatgagga 211
|| || ||| ||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 226 cgtgactcgatgcaacgcgcgctcattcaacaggaatacagga-ctatgtattctgagga 284
Query: 212 actctcccaccgtatttcatctgaactcagtggaaaccacaagaaagctatgtcgctgtg 271
||||| | |||||| |||||||||||||||||| ||||||||||||| ||| ||| ||
Sbjct: 285 tctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatg 344
Query: 272 gattcttgatcctgctggacgtgatgcaactgttttgagagaagctctaaatggtgacac 331
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||
Sbjct: 345 gattcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatac 404
Query: 332 tatggatctgagagcagccactgagattatatgttccaggacaccatcacagttgcaaat 391
||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct: 405 tattgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaat 464
Query: 392 aatgaaacagacttattatgctagattcggtacttatcttgagcatgacattgctcacca 451
|||||||||||||||| |||| | ||| ||||||||||||||||| ||||||| ||| |
Sbjct: 465 aatgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcg 524
Query: 452 cacatccggtgatcaccagaagcttttacttgcatatatggggattccacgctatgaagg 511
|||||| || || || |||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct: 525 cacatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaagg 584
Query: 512 tcccgaggttgatcctacaattgtgacacatgatgcaaaggatttgtacaaagctggtga 571
||| |||||||||||||| || |||||||| ||||||||||| | || |||||||||||
Sbjct: 585 tcctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtga 644
Query: 572 gaaaaggctgggtacggacgagaagatttttatccgtgttttcactgaacgcagttgggc 631
|||||||||||| || || ||||||| || ||||| |||||||||||||||| |||||
Sbjct: 645 gaaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggc 704
Query: 632 acacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggt 691
|||| ||||||||||| | ||||||||||||||||||||||| ||| | | ||||||||
Sbjct: 705 acacatggcatctgttgcctctgcttaccatcatatgtatgatcggtcactggagaaggt 764
Query: 692 tatcaagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgc 751
| | ||||||||||| ||||||||||||||| |||| || | |||||||||||||||||
Sbjct: 765 tgtgaagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgc 824
Query: 752 ggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcac 811
|| || ||||| ||||||||||| ||| |||| || ||| ||||||||||| | |||||
Sbjct: 825 tgagaatccagccaagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcac 884
Query: 812 tgatgacatgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatat 871
|||||| | |||||||||||||| || || || ||||| ||||| ||||||||||||||
Sbjct: 885 tgatgatagtacacttataagggttgtagtaacaaggactgagatcgacatgcaatatat 944
Query: 872 caaggcagagtacttgaagaagtataagaagccattagctgaggctatcaactccgagac 931
|||||| ||||||| ||||| || || || |||||||||| |||||| | ||||||||
Sbjct: 945 caaggctgagtactacaagaaatacaaaaaatcattagctgaagctatccattccgagac 1004
Query: 932 atcaggaaactatcggacgttccttctttcacttgttggt 971
|||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 1005 ctcaggaaattatcgaacattcctcctttctctagttggt 1044
>ref|XM_450905.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1296
Score = 872 bits (440), Expect = 0.0
Identities = 816/940 (86%), Gaps = 1/940 (0%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 106 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 165
Query: 92 cacaaggccttcaaagggtttggatgtgacagtacaacagggataaacatacttactcat 151
||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||
Sbjct: 166 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 225
Query: 152 cgcgattcggggcagcgtggactcattcaacaggaatacagggtctatgtatcatgagga 211
|| || ||| ||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 226 cgtgactcgatgcaacgcgcgctcattcaacaggaatacagga-ctatgtattctgagga 284
Query: 212 actctcccaccgtatttcatctgaactcagtggaaaccacaagaaagctatgtcgctgtg 271
||||| | |||||| |||||||||||||||||| ||||||||||||| ||| ||| ||
Sbjct: 285 tctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatg 344
Query: 272 gattcttgatcctgctggacgtgatgcaactgttttgagagaagctctaaatggtgacac 331
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||
Sbjct: 345 gattcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatac 404
Query: 332 tatggatctgagagcagccactgagattatatgttccaggacaccatcacagttgcaaat 391
||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct: 405 tattgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaat 464
Query: 392 aatgaaacagacttattatgctagattcggtacttatcttgagcatgacattgctcacca 451
|||||||||||||||| |||| | ||| ||||||||||||||||| ||||||| ||| |
Sbjct: 465 aatgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcg 524
Query: 452 cacatccggtgatcaccagaagcttttacttgcatatatggggattccacgctatgaagg 511
|||||| || || || |||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct: 525 cacatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaagg 584
Query: 512 tcccgaggttgatcctacaattgtgacacatgatgcaaaggatttgtacaaagctggtga 571
||| |||||||||||||| || |||||||| ||||||||||| | || |||||||||||
Sbjct: 585 tcctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtga 644
Query: 572 gaaaaggctgggtacggacgagaagatttttatccgtgttttcactgaacgcagttgggc 631
|||||||||||| || || ||||||| || ||||| |||||||||||||||| |||||
Sbjct: 645 gaaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggc 704
Query: 632 acacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggt 691
|||| ||||||||||| | ||||||||||||||||||||||| ||| | | ||||||||
Sbjct: 705 acacatggcatctgttgcctctgcttaccatcatatgtatgatcggtcactggagaaggt 764
Query: 692 tatcaagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgc 751
| | ||||||||||| ||||||||||||||| |||| || | |||||||||||||||||
Sbjct: 765 tgtgaagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgc 824
Query: 752 ggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcac 811
|| || ||||| ||||||||||| ||| |||| || ||| ||||||||||| | |||||
Sbjct: 825 tgagaatccagccaagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcac 884
Query: 812 tgatgacatgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatat 871
|||||| | |||||||||||||| || || || ||||| ||||| ||||||||||||||
Sbjct: 885 tgatgatagtacacttataagggttgtagtaacaaggactgagatcgacatgcaatatat 944
Query: 872 caaggcagagtacttgaagaagtataagaagccattagctgaggctatcaactccgagac 931
|||||| ||||||| ||||| || || || |||||||||| |||||| | ||||||||
Sbjct: 945 caaggctgagtactacaagaaatacaaaaaatcattagctgaagctatccattccgagac 1004
Query: 932 atcaggaaactatcggacgttccttctttcacttgttggt 971
|||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 1005 ctcaggaaattatcgaacattcctcctttctctagttggt 1044
>ref|XM_506666.1| PREDICTED Oryza sativa (japonica cultivar-group), B1339H09.19 mRNA
Length = 1298
Score = 872 bits (440), Expect = 0.0
Identities = 816/940 (86%), Gaps = 1/940 (0%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 108 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 167
Query: 92 cacaaggccttcaaagggtttggatgtgacagtacaacagggataaacatacttactcat 151
||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||
Sbjct: 168 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 227
Query: 152 cgcgattcggggcagcgtggactcattcaacaggaatacagggtctatgtatcatgagga 211
|| || ||| ||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 228 cgtgactcgatgcaacgcgcgctcattcaacaggaatacagga-ctatgtattctgagga 286
Query: 212 actctcccaccgtatttcatctgaactcagtggaaaccacaagaaagctatgtcgctgtg 271
||||| | |||||| |||||||||||||||||| ||||||||||||| ||| ||| ||
Sbjct: 287 tctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatg 346
Query: 272 gattcttgatcctgctggacgtgatgcaactgttttgagagaagctctaaatggtgacac 331
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||
Sbjct: 347 gattcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatac 406
Query: 332 tatggatctgagagcagccactgagattatatgttccaggacaccatcacagttgcaaat 391
||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct: 407 tattgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaat 466
Query: 392 aatgaaacagacttattatgctagattcggtacttatcttgagcatgacattgctcacca 451
|||||||||||||||| |||| | ||| ||||||||||||||||| ||||||| ||| |
Sbjct: 467 aatgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcg 526
Query: 452 cacatccggtgatcaccagaagcttttacttgcatatatggggattccacgctatgaagg 511
|||||| || || || |||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct: 527 cacatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaagg 586
Query: 512 tcccgaggttgatcctacaattgtgacacatgatgcaaaggatttgtacaaagctggtga 571
||| |||||||||||||| || |||||||| ||||||||||| | || |||||||||||
Sbjct: 587 tcctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtga 646
Query: 572 gaaaaggctgggtacggacgagaagatttttatccgtgttttcactgaacgcagttgggc 631
|||||||||||| || || ||||||| || ||||| |||||||||||||||| |||||
Sbjct: 647 gaaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggc 706
Query: 632 acacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggt 691
|||| ||||||||||| | ||||||||||||||||||||||| ||| | | ||||||||
Sbjct: 707 acacatggcatctgttgcctctgcttaccatcatatgtatgatcggtcactggagaaggt 766
Query: 692 tatcaagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgc 751
| | ||||||||||| ||||||||||||||| |||| || | |||||||||||||||||
Sbjct: 767 tgtgaagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgc 826
Query: 752 ggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcac 811
|| || ||||| ||||||||||| ||| |||| || ||| ||||||||||| | |||||
Sbjct: 827 tgagaatccagccaagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcac 886
Query: 812 tgatgacatgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatat 871
|||||| | |||||||||||||| || || || ||||| ||||| ||||||||||||||
Sbjct: 887 tgatgatagtacacttataagggttgtagtaacaaggactgagatcgacatgcaatatat 946
Query: 872 caaggcagagtacttgaagaagtataagaagccattagctgaggctatcaactccgagac 931
|||||| ||||||| ||||| || || || |||||||||| |||||| | ||||||||
Sbjct: 947 caaggctgagtactacaagaaatacaaaaaatcattagctgaagctatccattccgagac 1006
Query: 932 atcaggaaactatcggacgttccttctttcacttgttggt 971
|||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 1007 ctcaggaaattatcgaacattcctcctttctctagttggt 1046
>gb|CB654216.1|CB654216 OSJNEc06B10.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc06B10 5', mRNA sequence
Length = 846
Score = 781 bits (394), Expect = 0.0
Identities = 689/786 (87%), Gaps = 1/786 (0%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 53 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 112
Query: 92 cacaaggccttcaaagggtttggatgtgacagtacaacagggataaacatacttactcat 151
||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||
Sbjct: 113 cacaaggccttcaaagggtttggctgtgatagtacaacagttataaatatacttactcat 172
Query: 152 cgcgattcggggcagcgtggactcattcaacaggaatacagggtctatgtatcatgagga 211
|| || ||| ||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct: 173 cgtgactcgatgcaacgcgcgctcattcaacaggaatacagga-ctatgtattctgagga 231
Query: 212 actctcccaccgtatttcatctgaactcagtggaaaccacaagaaagctatgtcgctgtg 271
||||| | |||||| |||||||||||||||||| ||||||||||||| ||| ||| ||
Sbjct: 232 tctctctcgccgtatatcatctgaactcagtggacaccacaagaaagcaatgctgctatg 291
Query: 272 gattcttgatcctgctggacgtgatgcaactgttttgagagaagctctaaatggtgacac 331
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||
Sbjct: 292 gattcttgatcctgctggacgagatgcaactgttttgagagaagctctgagtggtgatac 351
Query: 332 tatggatctgagagcagccactgagattatatgttccaggacaccatcacagttgcaaat 391
||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct: 352 tattgacctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaat 411
Query: 392 aatgaaacagacttattatgctagattcggtacttatcttgagcatgacattgctcacca 451
|||||||||||||||| |||| | ||| ||||||||||||||||| ||||||| ||| |
Sbjct: 412 aatgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcg 471
Query: 452 cacatccggtgatcaccagaagcttttacttgcatatatggggattccacgctatgaagg 511
|||||| || || || |||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct: 472 cacatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaagg 531
Query: 512 tcccgaggttgatcctacaattgtgacacatgatgcaaaggatttgtacaaagctggtga 571
||| |||||||||||||| || |||||||| ||||||||||| | || |||||||||||
Sbjct: 532 tcctgaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtga 591
Query: 572 gaaaaggctgggtacggacgagaagatttttatccgtgttttcactgaacgcagttgggc 631
|||||||||||| || || ||||||| || ||||| |||||||||||||||| |||||
Sbjct: 592 gaaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggc 651
Query: 632 acacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggt 691
|||| ||||||||||| | ||||||||||||||||||||||| ||| | | ||||||||
Sbjct: 652 acacatggcatctgttgcctctgcttaccatcatatgtatgatcggtcactggagaaggt 711
Query: 692 tatcaagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgc 751
| | ||||||||||| ||||||||||||||| |||| || | |||||||||||||||||
Sbjct: 712 tgtgaagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgc 771
Query: 752 ggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcac 811
|| || ||||| ||||||||||| ||| |||| || ||| ||||||||||| | |||||
Sbjct: 772 tgagaatccagccaagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcac 831
Query: 812 tgatga 817
||||||
Sbjct: 832 tgatga 837
>gb|CB679364.1|CB679364 OSJNEf02M13.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M13 5', mRNA sequence
Length = 782
Score = 700 bits (353), Expect = 0.0
Identities = 669/773 (86%), Gaps = 1/773 (0%)
Strand = Plus / Plus
Query: 173 ctcattcaacaggaatacagggtctatgtatcatgaggaactctcccaccgtatttcatc 232
||||||||||||||||||||| |||||||| |||||| ||||| | |||||| |||||
Sbjct: 11 ctcattcaacaggaatacagga-ctatgtattctgaggatctctctcgccgtatatcatc 69
Query: 233 tgaactcagtggaaaccacaagaaagctatgtcgctgtggattcttgatcctgctggacg 292
||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct: 70 tgaactcagtggacaccacaagaaagcaatgctgctatggattcttgatcctgctggacg 129
Query: 293 tgatgcaactgttttgagagaagctctaaatggtgacactatggatctgagagcagccac 352
|||||||||||||||||||||||||| | |||||| ||||| || ||||||||||||||
Sbjct: 130 agatgcaactgttttgagagaagctctgagtggtgatactattgacctgagagcagccac 189
Query: 353 tgagattatatgttccaggacaccatcacagttgcaaataatgaaacagacttattatgc 412
|||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 190 tgagataatatgttccaggacaccatcgcagctgcaaataatgaaacagacttatcatgc 249
Query: 413 tagattcggtacttatcttgagcatgacattgctcaccacacatccggtgatcaccagaa 472
| ||| ||||||||||||||||| ||||||| ||| | |||||| || || || |||||
Sbjct: 250 aaaatttggtacttatcttgagcacgacattggtcagcgcacatcaggcgaccatcagaa 309
Query: 473 gcttttacttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaat 532
||| || ||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 310 gctcttgcttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactat 369
Query: 533 tgtgacacatgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacga 592
|||||||| ||||||||||| | || ||||||||||||||||||||||| || || ||
Sbjct: 370 agtgacacacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatga 429
Query: 593 gaagatttttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttc 652
||||| || ||||| |||||||||||||||| ||||||||| ||||||||||| | ||
Sbjct: 430 gaagaccttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctc 489
Query: 653 tgcttaccatcatatgtatgaccggaaattagagaaggttatcaagagcgaaacttctgg 712
||||||||||||||||||||| ||| | | ||||||||| | ||||||||||| |||||
Sbjct: 490 tgcttaccatcatatgtatgatcggtcactggagaaggttgtgaagagcgaaacatctgg 549
Query: 713 aaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcaaagtattt 772
|||||||||| |||| || | ||||||||||||||||| || || ||||| ||||||||
Sbjct: 550 aaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagccaagtattt 609
Query: 773 tgctaagctcttacgaaaggccatgaaaggtttaggcactgatgacatgacacttataag 832
||| ||| |||| || ||| ||||||||||| | ||||||||||| | |||||||||||
Sbjct: 610 tgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtacacttataag 669
Query: 833 ggtggtggtgacgaggaccgagattgacatgcaatatatcaaggcagagtacttgaagaa 892
||| || || || ||||| ||||| |||||||||||||||||||| ||||||| |||||
Sbjct: 670 ggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtactacaagaa 729
Query: 893 gtataagaagccattagctgaggctatcaactccgagacatcaggaaactatc 945
|| || || |||||||||| |||||| | |||||||| |||||||| ||||
Sbjct: 730 atacaaaaaatcattagctgaagctatccattccgagacctcaggaaattatc 782
>gb|CA755985.1|CA755985 BR030032000_PLATE_E03_21_021.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030032000_PLATE_E03_21_021.ab1 similar to annexin-like
protein [Medicago sativa], mRNA sequence
Length = 605
Score = 424 bits (214), Expect = e-116
Identities = 480/571 (84%)
Strand = Plus / Plus
Query: 385 tgcaaataatgaaacagacttattatgctagattcggtacttatcttgagcatgacattg 444
||||||||||||||||||||||| |||| | ||| ||||||||||||||||| |||||||
Sbjct: 6 tgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttgagcacgacattg 65
Query: 445 ctcaccacacatccggtgatcaccagaagcttttacttgcatatatggggattccacgct 504
||| | |||||| || || || |||||||| || ||||| ||| |||||||||||||||
Sbjct: 66 gtcagcgcacatcaggcgaccatcagaagctcttgcttgcttatgtggggattccacgct 125
Query: 505 atgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatttgtacaaag 564
|||||||||| |||||||||||||| || |||||||| |||||| |||| | || ||||
Sbjct: 126 atgaaggtcctgaggttgatcctactatagtgacacacgatgcanaggacctctataaag 185
Query: 565 ctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttcactgaacgca 624
||||||||||||||||||| || || ||||||| || ||||| |||||||||||||||
Sbjct: 186 ctggtgagaaaaggctgggcactgatgagaagaccttcatccgcattttcactgaacgca 245
Query: 625 gttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaattag 684
| ||||||||| ||||||||||| | ||||||||||||||||||||||| ||| | | |
Sbjct: 246 gctgggcacacatggcatctgttgcctctgcttaccatcatatgtatgatcggtcactgg 305
Query: 685 agaaggttatcaagagcgaaacttctggaaactttgaatttgcacttttgactatcctca 744
|||||||| | ||||||||||| ||||||||||||||| |||| || | ||||||||||
Sbjct: 306 agaaggttgtgaagagcgaaacatctggaaactttgaacttgctctgctaactatcctca 365
Query: 745 gatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtt 804
||||||| || || ||||| ||||||||||| || |||| || ||| |||||||||||
Sbjct: 366 gatgcgctgagaatccagccaagtattttgcanaggtcttgcggaagtccatgaaaggta 425
Query: 805 taggcactgatgacatgacacttataagggtggtggtgacgaggaccgagattgacatgc 864
| ||||||||||| | |||||||| ||||| || || || ||||| ||||| |||||||
Sbjct: 426 tgggcactgatgatagtacacttatnagggttgtagtaacaaggactgagatcgacatgc 485
Query: 865 aatatatcaaggcagagtacttgaagaagtataagaagccattagctgaggctatcaact 924
|||||||||||| ||||||| |||| || || || |||||||||| |||||| | |
Sbjct: 486 natatatcaaggctgagtactacnagaaatacaaaaaatcattagctgaagctatccatt 545
Query: 925 ccgagacatcaggaaactatcggacgttcct 955
||||||| ||| || | ||||| || |||||
Sbjct: 546 ccgagacctcanganattatcgaacattcct 576
>gb|CB654217.1|CB654217 OSJNEc06B10.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc06B10 3', mRNA sequence
Length = 657
Score = 404 bits (204), Expect = e-110
Identities = 429/504 (85%)
Strand = Plus / Minus
Query: 468 cagaagcttttacttgcatatatggggattccacgctatgaaggtcccgaggttgatcct 527
|||||||| || ||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 630 cagaagctcttgcttgcttatgtggggattccacgctatgaaggtcctgaggttgatcct 571
Query: 528 acaattgtgacacatgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacg 587
|| || |||||||| ||||||||||| | || ||||||||||||||||||||||| ||
Sbjct: 570 actatagtgacacacgatgcaaaggacctctataaagctggtgagaaaaggctgggcact 511
Query: 588 gacgagaagatttttatccgtgttttcactgaacgcagttgggcacacttggcatctgtt 647
|| ||||||| || ||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct: 510 gatgagaagaccttcatccgcattttcactgaacgcagctgggcacacatggcatctgtt 451
Query: 648 tcttctgcttaccatcatatgtatgaccggaaattagagaaggttatcaagagcgaaact 707
| ||||||||||||||||||||||| ||| | | ||||||||| | |||||||||||
Sbjct: 450 gcctctgcttaccatcatatgtatgatcggtcactggagaaggttgtgaagagcgaaaca 391
Query: 708 tctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcaaag 767
||||||||||||||| |||| || | ||||||||||||||||| || || ||||| |||
Sbjct: 390 tctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagccaag 331
Query: 768 tattttgctaagctcttacgaaaggccatgaaaggtttaggcactgatgacatgacactt 827
|||||||| ||| |||| || ||| ||||||||||| | ||||||||||| | ||||||
Sbjct: 330 tattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtacactt 271
Query: 828 ataagggtggtggtgacgaggaccgagattgacatgcaatatatcaaggcagagtacttg 887
|||||||| || || || ||||| ||||| |||||||||||||||||||| |||||||
Sbjct: 270 ataagggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtactac 211
Query: 888 aagaagtataagaagccattagctgaggctatcaactccgagacatcaggaaactatcgg 947
||||| || || || |||||||||| |||||| | |||||||| |||||||| |||||
Sbjct: 210 aagaaatacaaaaaatcattagctgaagctatccattccgagacctcaggaaattatcga 151
Query: 948 acgttccttctttcacttgttggt 971
|| ||||| ||||| || ||||||
Sbjct: 150 acattcctcctttctctagttggt 127
>gb|CB655408.1|CB655408 OSJNEc08M22.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08M22 3', mRNA sequence
Length = 785
Score = 373 bits (188), Expect = e-100
Identities = 401/472 (84%)
Strand = Plus / Minus
Query: 490 tggggattccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaa 549
|||||||||||||||||||||||| |||||||||| ||| || |||||||| |||||||
Sbjct: 783 tggggattccacgctatgaaggtcgtgaggttgatcttactatagtgacacacgatgcaa 724
Query: 550 aggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtg 609
|||| | || ||||||||||||||||||||||| || || ||||||| || |||||
Sbjct: 723 aggacctctataaagctggtgagaaaaggctgggcactgatgagaagaccttcatccgca 664
Query: 610 ttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgt 669
|||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||||
Sbjct: 663 ttttcactgaacgcagctgggcacacatggcatctgttgcctctgcttaccatcatatgt 604
Query: 670 atgaccggaaattagagaaggttatcaagagcgaaacttctggaaactttgaatttgcac 729
|||| ||| | | ||||||||| | ||||||||||| ||||||||||||||| |||| |
Sbjct: 603 atgatcggtcactggagaaggttgtgaagagcgaaacatctggaaactttgaacttgctc 544
Query: 730 ttttgactatcctcagatgcgcggaaaacccagcaaagtattttgctaagctcttacgaa 789
| | ||||||||||||||||| || || ||||| ||||||||||| ||| |||| || |
Sbjct: 543 tgctaactatcctcagatgcgctgagaatccagccaagtattttgcaaaggtcttgcgga 484
Query: 790 aggccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgagga 849
|| ||||||||||| | ||||||||||| | |||||||||||||| || || || ||||
Sbjct: 483 agtccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaagga 424
Query: 850 ccgagattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattag 909
| ||||| |||||||||||||||||||| ||||||| ||||| || || || ||||||
Sbjct: 423 ctgagatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattag 364
Query: 910 ctgaggctatcaactccgagacatcaggaaactatcggacgttccttctttc 961
|||| |||||| | |||||||| |||||||| ||||| || ||||| |||||
Sbjct: 363 ctgaagctatccattccgagacctcaggaaattatcgaacattcctcctttc 312
>gb|CB679365.1|CB679365 OSJNEf02M13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M13 3', mRNA sequence
Length = 767
Score = 349 bits (176), Expect = 3e-093
Identities = 386/456 (84%)
Strand = Plus / Minus
Query: 516 gaggttgatcctacaattgtgacacatgatgcaaaggatttgtacaaagctggtgagaaa 575
|||||||||||||| || |||||||| ||||||||||| | || |||||||||||||||
Sbjct: 766 gaggttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtgagaaa 707
Query: 576 aggctgggtacggacgagaagatttttatccgtgttttcactgaacgcagttgggcacac 635
|||||||| || || ||||||| || ||||| |||||||||||||||| |||||||||
Sbjct: 706 aggctgggcactgatgagaagaccttcatccgcattttcactgaacgcagctgggcacac 647
Query: 636 ttggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggttatc 695
||||||||||| | ||||||||||||||||||||||| ||| | | ||||||||| |
Sbjct: 646 atggcatctgttgcctctgcttaccatcatatgtatgatcggtcactggagaaggttgtg 587
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||||||||| ||||||||||||||| |||| || | ||||||||||||||||| ||
Sbjct: 586 aagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgctgag 527
Query: 756 aacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcactgat 815
|| ||||| ||||||||||| ||| |||| || ||| ||||||||||| | |||||||||
Sbjct: 526 aatccagccaagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgat 467
Query: 816 gacatgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaag 875
|| | |||||||||||||| || || || ||||| ||||| ||||||||||||||||||
Sbjct: 466 gatagtacacttataagggttgtagtaacaaggactgagatcgacatgcaatatatcaag 407
Query: 876 gcagagtacttgaagaagtataagaagccattagctgaggctatcaactccgagacatca 935
|| ||||||| ||||| || || || |||||||||| |||||| | |||||||| |||
Sbjct: 406 gctgagtactacaagaaatacaaaaaatcattagctgaagctatccattccgagacctca 347
Query: 936 ggaaactatcggacgttccttctttcacttgttggt 971
||||| ||||| || ||||| ||||| || ||||||
Sbjct: 346 ggaaattatcgaacattcctcctttctctagttggt 311
>gb|D39787.1|D39787 RICS1380A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 361
Score = 345 bits (174), Expect = 4e-092
Identities = 297/337 (88%), Gaps = 2/337 (0%)
Strand = Plus / Plus
Query: 339 ctgagagcagccactgagattatatgttccaggacaccatcacagttgcaaataatgaaa 398
|||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct: 4 ctgagagcagccactgagataatatgttccaggacaccatcgcagctgcaaataatgaaa 63
Query: 399 cagacttattatgctagattcggtacttatcttgagcatgacattgctcaccacacatcc 458
||||||||| |||| | ||| ||||||||||||||||| ||||||| ||| | ||||||
Sbjct: 64 cagacttatcatgcaaaatttggtacttatcttgagcacgacattggtcagcgcacatca 123
Query: 459 ggtgatcaccagaagcttttacttgcatatatggggattccacgctatgaaggtcccgag 518
|| || || |||||||| || ||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 124 ggcgaccatcagaagctcttgcttgcttatgtggggattccacgctatgaaggtcctgag 183
Query: 519 gttgatcctacaattgtgacacatgatgcaaaggatttgtacaaagctggtgagaaaagg 578
||||||||||| || |||||||| ||||||||||| | || ||||||||||||||||||
Sbjct: 184 gttgatcctactatagtgacacacgatgcaaaggacctctataaagctggtgagaaaagg 243
Query: 579 ctgggtacggacgagaaga--tttttatccgtgttttcactgaacgcagttgggcacact 636
||||| || || ||||||| ||| ||||| |||||||||||||||| |||||||||
Sbjct: 244 ctgggcactgatgagaagacctttcaatccgcattttcactgaacgcagctgggcacaca 303
Query: 637 tggcatctgtttcttctgcttaccatcatatgtatga 673
||||||||||| | |||||||||||||||||||||||
Sbjct: 304 tggcatctgttgcctctgcttaccatcatatgtatga 340
>gb|C27470.1|C27470 C27470 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51961_1A, mRNA sequence
Length = 395
Score = 309 bits (156), Expect = 2e-081
Identities = 328/385 (85%), Gaps = 1/385 (0%)
Strand = Plus / Plus
Query: 420 ggtacttatcttgagcatgacattgctcaccacacatccggtgatcaccagaagctttta 479
||||||||||||||||| ||||||| ||| | |||||| || || || |||||||| ||
Sbjct: 6 ggtacttatcttgagcacgacattggtcagcgcacatcaggcgaccatcagaagctcttg 65
Query: 480 cttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaattgtgaca 539
||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 66 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 125
Query: 540 catgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatt 599
|| ||||||||||| | || ||||||||||||||||||||||| || || |||||||
Sbjct: 126 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 185
Query: 600 tttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttac 659
|| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct: 186 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 245
Query: 660 catcatatgtatgaccggaaattagagaaggttatcaagagcgaaacttctggaaacttt 719
|||||||||||||| ||| | | ||||||||| | ||||||||||| ||||||||||||
Sbjct: 246 catcatatgtatgatcggtcactggagaaggttgtgaagagcgaaacatctggaaacttt 305
Query: 720 gaatttgcacttttgactatcctcagatgcgcggaaaacccagcaaagtattttgctaag 779
||| |||| || | ||||||||||||||||| || || ||||| |||| |||| | |||
Sbjct: 306 gaacttgctctgctaactatcctcagatgcgctgagaatccagccaagtnttttncaaag 365
Query: 780 ctcttac-gaaaggccatgaaaggt 803
|||| | | ||| |||||||||||
Sbjct: 366 gtcttncgggaagtccatgaaaggt 390
>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1040D06
Length = 155034
Score = 240 bits (121), Expect = 2e-060
Identities = 184/205 (89%)
Strand = Plus / Plus
Query: 253 agaaagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagag 312
||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 52082 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 52141
Query: 313 aagctctaaatggtgacactatggatctgagagcagccactgagattatatgttccagga 372
||||||| | |||||| ||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 52142 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 52201
Query: 373 caccatcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttg 432
||||||| ||| ||||||||||||||||||||||| |||| | ||| |||||||||||||
Sbjct: 52202 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 52261
Query: 433 agcatgacattgctcaccacacatc 457
|||| ||||||| ||| | ||||||
Sbjct: 52262 agcacgacattggtcagcgcacatc 52286
Score = 210 bits (106), Expect = 2e-051
Identities = 172/194 (88%)
Strand = Plus / Plus
Query: 480 cttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaattgtgaca 539
||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 52806 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 52865
Query: 540 catgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatt 599
|| ||||||||||| | || ||||||||||||||||||||||| || || |||||||
Sbjct: 52866 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 52925
Query: 600 tttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttac 659
|| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct: 52926 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 52985
Query: 660 catcatatgtatga 673
||||||||||||||
Sbjct: 52986 catcatatgtatga 52999
Score = 137 bits (69), Expect = 2e-029
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 50111 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 50170
Query: 92 cacaaggccttcaaagg 108
|||||||||||||||||
Sbjct: 50171 cacaaggccttcaaagg 50187
Score = 125 bits (63), Expect = 7e-026
Identities = 150/179 (83%)
Strand = Plus / Plus
Query: 793 ccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccg 852
||||||||||| | ||||||||||| | |||||||||||||| || || || ||||| |
Sbjct: 54434 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 54493
Query: 853 agattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctg 912
|||| |||||||||||||||||||| ||||||| ||||| || || || |||||||||
Sbjct: 54494 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 54553
Query: 913 aggctatcaactccgagacatcaggaaactatcggacgttccttctttcacttgttggt 971
| |||||| | |||||||| |||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 54554 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 54612
Score = 113 bits (57), Expect = 3e-022
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 106 agggtttggatgtgacagtacaacagggataaacatacttactcatcgcgattcggggca 165
||||||||| ||||| |||||||||| ||||| |||||||||||||| || ||| |||
Sbjct: 51705 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 51764
Query: 166 gcgtggactcattcaacaggaatacagggtctatgtatcatgaggaactctcccaccgta 225
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | |||||
Sbjct: 51765 acgcgcgctcattcaacaggaatacagga-ctatgtattctgaggatctctctcgccgta 51823
Query: 226 tttcatctgaactcagtggaaaccacaag 254
| |||||||||||||||||| ||||||||
Sbjct: 51824 tatcatctgaactcagtggacaccacaag 51852
Score = 79.8 bits (40), Expect = 4e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||||||||| ||||||||||||||| |||| || | ||||||||||||||||| ||
Sbjct: 53109 aagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgctgag 53168
Query: 756 aacccagcaaagtattttgc 775
|| ||||| |||||||||||
Sbjct: 53169 aatccagccaagtattttgc 53188
>dbj|AP006453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1339H09
Length = 131136
Score = 240 bits (121), Expect = 2e-060
Identities = 184/205 (89%)
Strand = Plus / Plus
Query: 253 agaaagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagag 312
||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 91384 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 91443
Query: 313 aagctctaaatggtgacactatggatctgagagcagccactgagattatatgttccagga 372
||||||| | |||||| ||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 91444 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 91503
Query: 373 caccatcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttg 432
||||||| ||| ||||||||||||||||||||||| |||| | ||| |||||||||||||
Sbjct: 91504 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 91563
Query: 433 agcatgacattgctcaccacacatc 457
|||| ||||||| ||| | ||||||
Sbjct: 91564 agcacgacattggtcagcgcacatc 91588
Score = 210 bits (106), Expect = 2e-051
Identities = 172/194 (88%)
Strand = Plus / Plus
Query: 480 cttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaattgtgaca 539
||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 92108 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 92167
Query: 540 catgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatt 599
|| ||||||||||| | || ||||||||||||||||||||||| || || |||||||
Sbjct: 92168 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 92227
Query: 600 tttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttac 659
|| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct: 92228 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 92287
Query: 660 catcatatgtatga 673
||||||||||||||
Sbjct: 92288 catcatatgtatga 92301
Score = 137 bits (69), Expect = 2e-029
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 89413 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 89472
Query: 92 cacaaggccttcaaagg 108
|||||||||||||||||
Sbjct: 89473 cacaaggccttcaaagg 89489
Score = 125 bits (63), Expect = 7e-026
Identities = 150/179 (83%)
Strand = Plus / Plus
Query: 793 ccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccg 852
||||||||||| | ||||||||||| | |||||||||||||| || || || ||||| |
Sbjct: 93736 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 93795
Query: 853 agattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctg 912
|||| |||||||||||||||||||| ||||||| ||||| || || || |||||||||
Sbjct: 93796 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 93855
Query: 913 aggctatcaactccgagacatcaggaaactatcggacgttccttctttcacttgttggt 971
| |||||| | |||||||| |||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 93856 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 93914
Score = 113 bits (57), Expect = 3e-022
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 106 agggtttggatgtgacagtacaacagggataaacatacttactcatcgcgattcggggca 165
||||||||| ||||| |||||||||| ||||| |||||||||||||| || ||| |||
Sbjct: 91007 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 91066
Query: 166 gcgtggactcattcaacaggaatacagggtctatgtatcatgaggaactctcccaccgta 225
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | |||||
Sbjct: 91067 acgcgcgctcattcaacaggaatacagga-ctatgtattctgaggatctctctcgccgta 91125
Query: 226 tttcatctgaactcagtggaaaccacaag 254
| |||||||||||||||||| ||||||||
Sbjct: 91126 tatcatctgaactcagtggacaccacaag 91154
Score = 79.8 bits (40), Expect = 4e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||||||||| ||||||||||||||| |||| || | ||||||||||||||||| ||
Sbjct: 92411 aagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgctgag 92470
Query: 756 aacccagcaaagtattttgc 775
|| ||||| |||||||||||
Sbjct: 92471 aatccagccaagtattttgc 92490
>gb|AACV01019900.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019900, whole
genome shotgun sequence
Length = 5795
Score = 240 bits (121), Expect = 2e-060
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 253 agaaagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagag 312
||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3884 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 3825
Query: 313 aagctctaaatggtgacactatggatctgagagcagccactgagattatatgttccagga 372
||||||| | |||||| ||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 3824 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 3765
Query: 373 caccatcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttg 432
||||||| ||| ||||||||||||||||||||||| |||| | ||| |||||||||||||
Sbjct: 3764 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 3705
Query: 433 agcatgacattgctcaccacacatc 457
|||| ||||||| ||| | ||||||
Sbjct: 3704 agcacgacattggtcagcgcacatc 3680
Score = 210 bits (106), Expect = 2e-051
Identities = 172/194 (88%)
Strand = Plus / Minus
Query: 480 cttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaattgtgaca 539
||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 3160 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 3101
Query: 540 catgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatt 599
|| ||||||||||| | || ||||||||||||||||||||||| || || |||||||
Sbjct: 3100 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 3041
Query: 600 tttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttac 659
|| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct: 3040 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 2981
Query: 660 catcatatgtatga 673
||||||||||||||
Sbjct: 2980 catcatatgtatga 2967
Score = 125 bits (63), Expect = 7e-026
Identities = 150/179 (83%)
Strand = Plus / Minus
Query: 793 ccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccg 852
||||||||||| | ||||||||||| | |||||||||||||| || || || ||||| |
Sbjct: 1532 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 1473
Query: 853 agattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctg 912
|||| |||||||||||||||||||| ||||||| ||||| || || || |||||||||
Sbjct: 1472 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 1413
Query: 913 aggctatcaactccgagacatcaggaaactatcggacgttccttctttcacttgttggt 971
| |||||| | |||||||| |||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 1412 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 1354
Score = 113 bits (57), Expect = 3e-022
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 106 agggtttggatgtgacagtacaacagggataaacatacttactcatcgcgattcggggca 165
||||||||| ||||| |||||||||| ||||| |||||||||||||| || ||| |||
Sbjct: 4261 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 4202
Query: 166 gcgtggactcattcaacaggaatacagggtctatgtatcatgaggaactctcccaccgta 225
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | |||||
Sbjct: 4201 acgcgcgctcattcaacaggaatacagga-ctatgtattctgaggatctctctcgccgta 4143
Query: 226 tttcatctgaactcagtggaaaccacaag 254
| |||||||||||||||||| ||||||||
Sbjct: 4142 tatcatctgaactcagtggacaccacaag 4114
Score = 79.8 bits (40), Expect = 4e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||||||||| ||||||||||||||| |||| || | ||||||||||||||||| ||
Sbjct: 2857 aagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgctgag 2798
Query: 756 aacccagcaaagtattttgc 775
|| ||||| |||||||||||
Sbjct: 2797 aatccagccaagtattttgc 2778
>ref|NT_107083.1| Oryza sativa (japonica cultivar-group)
Length = 598321
Score = 240 bits (121), Expect = 2e-060
Identities = 184/205 (89%)
Strand = Plus / Plus
Query: 253 agaaagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagag 312
||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 101954 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 102013
Query: 313 aagctctaaatggtgacactatggatctgagagcagccactgagattatatgttccagga 372
||||||| | |||||| ||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 102014 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 102073
Query: 373 caccatcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttg 432
||||||| ||| ||||||||||||||||||||||| |||| | ||| |||||||||||||
Sbjct: 102074 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 102133
Query: 433 agcatgacattgctcaccacacatc 457
|||| ||||||| ||| | ||||||
Sbjct: 102134 agcacgacattggtcagcgcacatc 102158
Score = 210 bits (106), Expect = 2e-051
Identities = 172/194 (88%)
Strand = Plus / Plus
Query: 480 cttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaattgtgaca 539
||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 102678 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 102737
Query: 540 catgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatt 599
|| ||||||||||| | || ||||||||||||||||||||||| || || |||||||
Sbjct: 102738 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 102797
Query: 600 tttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttac 659
|| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct: 102798 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 102857
Query: 660 catcatatgtatga 673
||||||||||||||
Sbjct: 102858 catcatatgtatga 102871
Score = 137 bits (69), Expect = 2e-029
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 99983 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 100042
Query: 92 cacaaggccttcaaagg 108
|||||||||||||||||
Sbjct: 100043 cacaaggccttcaaagg 100059
Score = 125 bits (63), Expect = 7e-026
Identities = 150/179 (83%)
Strand = Plus / Plus
Query: 793 ccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccg 852
||||||||||| | ||||||||||| | |||||||||||||| || || || ||||| |
Sbjct: 104306 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 104365
Query: 853 agattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctg 912
|||| |||||||||||||||||||| ||||||| ||||| || || || |||||||||
Sbjct: 104366 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 104425
Query: 913 aggctatcaactccgagacatcaggaaactatcggacgttccttctttcacttgttggt 971
| |||||| | |||||||| |||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 104426 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 104484
Score = 113 bits (57), Expect = 3e-022
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 106 agggtttggatgtgacagtacaacagggataaacatacttactcatcgcgattcggggca 165
||||||||| ||||| |||||||||| ||||| |||||||||||||| || ||| |||
Sbjct: 101577 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 101636
Query: 166 gcgtggactcattcaacaggaatacagggtctatgtatcatgaggaactctcccaccgta 225
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | |||||
Sbjct: 101637 acgcgcgctcattcaacaggaatacagga-ctatgtattctgaggatctctctcgccgta 101695
Query: 226 tttcatctgaactcagtggaaaccacaag 254
| |||||||||||||||||| ||||||||
Sbjct: 101696 tatcatctgaactcagtggacaccacaag 101724
Score = 79.8 bits (40), Expect = 4e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||||||||| ||||||||||||||| |||| || | ||||||||||||||||| ||
Sbjct: 102981 aagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgctgag 103040
Query: 756 aacccagcaaagtattttgc 775
|| ||||| |||||||||||
Sbjct: 103041 aatccagccaagtattttgc 103060
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 240 bits (121), Expect = 2e-060
Identities = 184/205 (89%)
Strand = Plus / Plus
Query: 253 agaaagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagag 312
||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3043674 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 3043733
Query: 313 aagctctaaatggtgacactatggatctgagagcagccactgagattatatgttccagga 372
||||||| | |||||| ||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 3043734 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 3043793
Query: 373 caccatcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttg 432
||||||| ||| ||||||||||||||||||||||| |||| | ||| |||||||||||||
Sbjct: 3043794 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 3043853
Query: 433 agcatgacattgctcaccacacatc 457
|||| ||||||| ||| | ||||||
Sbjct: 3043854 agcacgacattggtcagcgcacatc 3043878
Score = 210 bits (106), Expect = 2e-051
Identities = 172/194 (88%)
Strand = Plus / Plus
Query: 480 cttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaattgtgaca 539
||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 3044398 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 3044457
Query: 540 catgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatt 599
|| ||||||||||| | || ||||||||||||||||||||||| || || |||||||
Sbjct: 3044458 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 3044517
Query: 600 tttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttac 659
|| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct: 3044518 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 3044577
Query: 660 catcatatgtatga 673
||||||||||||||
Sbjct: 3044578 catcatatgtatga 3044591
Score = 125 bits (63), Expect = 7e-026
Identities = 150/179 (83%)
Strand = Plus / Plus
Query: 793 ccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccg 852
||||||||||| | ||||||||||| | |||||||||||||| || || || ||||| |
Sbjct: 3046026 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 3046085
Query: 853 agattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctg 912
|||| |||||||||||||||||||| ||||||| ||||| || || || |||||||||
Sbjct: 3046086 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 3046145
Query: 913 aggctatcaactccgagacatcaggaaactatcggacgttccttctttcacttgttggt 971
| |||||| | |||||||| |||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 3046146 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 3046204
Score = 125 bits (63), Expect = 7e-026
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 3041588 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccattgacctc 3041647
Query: 92 cacaaggccttcaaa 106
|||||||||||||||
Sbjct: 3041648 cacaaggccttcaaa 3041662
Score = 113 bits (57), Expect = 3e-022
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 106 agggtttggatgtgacagtacaacagggataaacatacttactcatcgcgattcggggca 165
||||||||| ||||| |||||||||| ||||| |||||||||||||| || ||| |||
Sbjct: 3043297 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 3043356
Query: 166 gcgtggactcattcaacaggaatacagggtctatgtatcatgaggaactctcccaccgta 225
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | |||||
Sbjct: 3043357 acgcgcgctcattcaacaggaatacagga-ctatgtattctgaggatctctctcgccgta 3043415
Query: 226 tttcatctgaactcagtggaaaccacaag 254
| |||||||||||||||||| ||||||||
Sbjct: 3043416 tatcatctgaactcagtggacaccacaag 3043444
Score = 79.8 bits (40), Expect = 4e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||||||||| ||||||||||||||| |||| || | ||||||||||||||||| ||
Sbjct: 3044701 aagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgctgag 3044760
Query: 756 aacccagcaaagtattttgc 775
|| ||||| |||||||||||
Sbjct: 3044761 aatccagccaagtattttgc 3044780
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 628 gggcacacttggcatctgtttcttctg 654
|||||||||||||||||| ||||||||
Sbjct: 10090382 gggcacacttggcatctgcttcttctg 10090408
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 240 bits (121), Expect = 2e-060
Identities = 184/205 (89%)
Strand = Plus / Plus
Query: 253 agaaagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagag 312
||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 12517485 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 12517544
Query: 313 aagctctaaatggtgacactatggatctgagagcagccactgagattatatgttccagga 372
||||||| | |||||| ||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 12517545 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 12517604
Query: 373 caccatcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttg 432
||||||| ||| ||||||||||||||||||||||| |||| | ||| |||||||||||||
Sbjct: 12517605 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 12517664
Query: 433 agcatgacattgctcaccacacatc 457
|||| ||||||| ||| | ||||||
Sbjct: 12517665 agcacgacattggtcagcgcacatc 12517689
Score = 210 bits (106), Expect = 2e-051
Identities = 172/194 (88%)
Strand = Plus / Plus
Query: 480 cttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaattgtgaca 539
||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 12518209 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 12518268
Query: 540 catgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatt 599
|| ||||||||||| | || ||||||||||||||||||||||| || || |||||||
Sbjct: 12518269 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 12518328
Query: 600 tttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttac 659
|| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct: 12518329 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 12518388
Query: 660 catcatatgtatga 673
||||||||||||||
Sbjct: 12518389 catcatatgtatga 12518402
Score = 125 bits (63), Expect = 7e-026
Identities = 150/179 (83%)
Strand = Plus / Plus
Query: 793 ccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccg 852
||||||||||| | ||||||||||| | |||||||||||||| || || || ||||| |
Sbjct: 12519837 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 12519896
Query: 853 agattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctg 912
|||| |||||||||||||||||||| ||||||| ||||| || || || |||||||||
Sbjct: 12519897 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 12519956
Query: 913 aggctatcaactccgagacatcaggaaactatcggacgttccttctttcacttgttggt 971
| |||||| | |||||||| |||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 12519957 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 12520015
Score = 125 bits (63), Expect = 7e-026
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 12515399 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccattgacctc 12515458
Query: 92 cacaaggccttcaaa 106
|||||||||||||||
Sbjct: 12515459 cacaaggccttcaaa 12515473
Score = 113 bits (57), Expect = 3e-022
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 106 agggtttggatgtgacagtacaacagggataaacatacttactcatcgcgattcggggca 165
||||||||| ||||| |||||||||| ||||| |||||||||||||| || ||| |||
Sbjct: 12517108 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 12517167
Query: 166 gcgtggactcattcaacaggaatacagggtctatgtatcatgaggaactctcccaccgta 225
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | |||||
Sbjct: 12517168 acgcgcgctcattcaacaggaatacagga-ctatgtattctgaggatctctctcgccgta 12517226
Query: 226 tttcatctgaactcagtggaaaccacaag 254
| |||||||||||||||||| ||||||||
Sbjct: 12517227 tatcatctgaactcagtggacaccacaag 12517255
Score = 79.8 bits (40), Expect = 4e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||||||||| ||||||||||||||| |||| || | ||||||||||||||||| ||
Sbjct: 12518512 aagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgctgag 12518571
Query: 756 aacccagcaaagtattttgc 775
|| ||||| |||||||||||
Sbjct: 12518572 aatccagccaagtattttgc 12518591
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 628 gggcacacttggcatctgtttcttctg 654
|||||||||||||||||| ||||||||
Sbjct: 19564193 gggcacacttggcatctgcttcttctg 19564219
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 240 bits (121), Expect = 2e-060
Identities = 184/205 (89%)
Strand = Plus / Plus
Query: 253 agaaagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagag 312
||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13653968 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 13654027
Query: 313 aagctctaaatggtgacactatggatctgagagcagccactgagattatatgttccagga 372
||||||| | |||||| ||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 13654028 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 13654087
Query: 373 caccatcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttg 432
||||||| ||| ||||||||||||||||||||||| |||| | ||| |||||||||||||
Sbjct: 13654088 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 13654147
Query: 433 agcatgacattgctcaccacacatc 457
|||| ||||||| ||| | ||||||
Sbjct: 13654148 agcacgacattggtcagcgcacatc 13654172
Score = 210 bits (106), Expect = 2e-051
Identities = 172/194 (88%)
Strand = Plus / Plus
Query: 480 cttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaattgtgaca 539
||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 13654692 cttgcttatgtggggattccacgctatgaaggtcctgaggttgatcctactatagtgaca 13654751
Query: 540 catgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatt 599
|| ||||||||||| | || ||||||||||||||||||||||| || || |||||||
Sbjct: 13654752 cacgatgcaaaggacctctataaagctggtgagaaaaggctgggcactgatgagaagacc 13654811
Query: 600 tttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttac 659
|| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct: 13654812 ttcatccgcattttcactgaacgcagctgggcacacatggcatctgttgcctctgcttac 13654871
Query: 660 catcatatgtatga 673
||||||||||||||
Sbjct: 13654872 catcatatgtatga 13654885
Score = 137 bits (69), Expect = 2e-029
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 13651997 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccatcgacctc 13652056
Query: 92 cacaaggccttcaaagg 108
|||||||||||||||||
Sbjct: 13652057 cacaaggccttcaaagg 13652073
Score = 125 bits (63), Expect = 7e-026
Identities = 150/179 (83%)
Strand = Plus / Plus
Query: 793 ccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccg 852
||||||||||| | ||||||||||| | |||||||||||||| || || || ||||| |
Sbjct: 13656320 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 13656379
Query: 853 agattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctg 912
|||| |||||||||||||||||||| ||||||| ||||| || || || |||||||||
Sbjct: 13656380 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 13656439
Query: 913 aggctatcaactccgagacatcaggaaactatcggacgttccttctttcacttgttggt 971
| |||||| | |||||||| |||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 13656440 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 13656498
Score = 113 bits (57), Expect = 3e-022
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 106 agggtttggatgtgacagtacaacagggataaacatacttactcatcgcgattcggggca 165
||||||||| ||||| |||||||||| ||||| |||||||||||||| || ||| |||
Sbjct: 13653591 agggtttggctgtgatagtacaacagttataaatatacttactcatcgtgactcgatgca 13653650
Query: 166 gcgtggactcattcaacaggaatacagggtctatgtatcatgaggaactctcccaccgta 225
|| | ||||||||||||||||||||| |||||||| |||||| ||||| | |||||
Sbjct: 13653651 acgcgcgctcattcaacaggaatacagga-ctatgtattctgaggatctctctcgccgta 13653709
Query: 226 tttcatctgaactcagtggaaaccacaag 254
| |||||||||||||||||| ||||||||
Sbjct: 13653710 tatcatctgaactcagtggacaccacaag 13653738
Score = 79.8 bits (40), Expect = 4e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||||||||| ||||||||||||||| |||| || | ||||||||||||||||| ||
Sbjct: 13654995 aagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgctgag 13655054
Query: 756 aacccagcaaagtattttgc 775
|| ||||| |||||||||||
Sbjct: 13655055 aatccagccaagtattttgc 13655074
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 628 gggcacacttggcatctgtttcttctg 654
|||||||||||||||||| ||||||||
Sbjct: 20608750 gggcacacttggcatctgcttcttctg 20608776
>gb|AQ916049.1|AQ916049 nbeb0061A10r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0061A10r, DNA sequence
Length = 466
Score = 238 bits (120), Expect = 7e-060
Identities = 174/192 (90%)
Strand = Plus / Plus
Query: 253 agaaagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagag 312
||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 272 agaaagcaatgctgctatggattcttgatcctgctggacgagatgcaactgttttgagag 331
Query: 313 aagctctaaatggtgacactatggatctgagagcagccactgagattatatgttccagga 372
||||||| | |||||| ||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 332 aagctctgagtggtgatactattgacctgagagcagccactgagataatatgttccagga 391
Query: 373 caccatcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttg 432
||||||| ||| ||||||||||||||||||||||| |||| | ||| |||||||||||||
Sbjct: 392 caccatcgcagctgcaaataatgaaacagacttatcatgcaaaatttggtacttatcttg 451
Query: 433 agcatgacattg 444
|||| |||||||
Sbjct: 452 agcacgacattg 463
>dbj|AP005430.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0705B06, ***
SEQUENCING IN PROGRESS ***
Length = 154064
Score = 125 bits (63), Expect = 7e-026
Identities = 150/179 (83%)
Strand = Plus / Minus
Query: 793 ccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccg 852
||||||||||| | ||||||||||| | |||||||||||||| || || || ||||| |
Sbjct: 152708 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 152649
Query: 853 agattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctg 912
|||| |||||||||||||||||||| ||||||| ||||| || || || |||||||||
Sbjct: 152648 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 152589
Query: 913 aggctatcaactccgagacatcaggaaactatcggacgttccttctttcacttgttggt 971
| |||||| | |||||||| |||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 152588 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 152530
Score = 79.8 bits (40), Expect = 4e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||||||||| ||||||||||||||| |||| || | ||||||||||||||||| ||
Sbjct: 154033 aagagcgaaacatctggaaactttgaacttgctctgctaactatcctcagatgcgctgag 153974
Query: 756 aacccagcaaagtattttgc 775
|| ||||| |||||||||||
Sbjct: 153973 aatccagccaagtattttgc 153954
>gb|AACV01019899.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019899, whole
genome shotgun sequence
Length = 5085
Score = 125 bits (63), Expect = 7e-026
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 32 atggcgagcctcaccctgccgccggcgccccccaacccacgccaggacgccatcgacctc 91
|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 5011 atggcgagcctcaccctgccgccggcgcccaccaaccctcgccaggacgccattgacctc 5070
Query: 92 cacaaggccttcaaa 106
|||||||||||||||
Sbjct: 5071 cacaaggccttcaaa 5085
>gb|AACV01020446.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020446, whole
genome shotgun sequence
Length = 121564
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 628 gggcacacttggcatctgtttcttctg 654
|||||||||||||||||| ||||||||
Sbjct: 28562 gggcacacttggcatctgcttcttctg 28588
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0515E01
Length = 140063
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 628 gggcacacttggcatctgtttcttctg 654
|||||||||||||||||| ||||||||
Sbjct: 74408 gggcacacttggcatctgcttcttctg 74434
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1112_E07
Length = 132055
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 628 gggcacacttggcatctgtttcttctg 654
|||||||||||||||||| ||||||||
Sbjct: 2361 gggcacacttggcatctgcttcttctg 2387
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 628 gggcacacttggcatctgtttcttctg 654
|||||||||||||||||| ||||||||
Sbjct: 502250 gggcacacttggcatctgcttcttctg 502276
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,019,273
Number of Sequences: 438736
Number of extensions: 2019273
Number of successful extensions: 10897
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10706
Number of HSP's gapped (non-prelim): 165
length of query: 1473
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1452
effective length of database: 2,791,206,460
effective search space: 4052831779920
effective search space used: 4052831779920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)