BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336981.2.1
(510 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK067639.1| Oryza sativa (japonica cultivar-group) cDNA... 139 2e-030
dbj|AK104709.1| Oryza sativa (japonica cultivar-group) cDNA... 131 4e-028
emb|AL954826.3|CNS08CD2 Oryza sativa chromosome 12, . BAC O... 125 2e-026
ref|NT_107147.1| Oryza sativa (japonica cultivar-group) 125 2e-026
gb|AACV01024523.1| Oryza sativa (japonica cultivar-group) c... 125 2e-026
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 125 2e-026
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 125 2e-026
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 125 2e-026
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 125 2e-026
gb|AACV01020218.1| Oryza sativa (japonica cultivar-group) c... 115 2e-023
ref|XM_450986.1| Oryza sativa (japonica cultivar-group), mRNA 115 2e-023
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 115 2e-023
dbj|AP005573.3| Oryza sativa (japonica cultivar-group) geno... 115 2e-023
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 115 2e-023
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 115 2e-023
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 115 2e-023
emb|BX569687.1|CNS09SBM Oryza sativa (japonica cultivar-gro... 111 4e-022
emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC O... 111 4e-022
gb|AACV01024542.1| Oryza sativa (japonica cultivar-group) c... 111 4e-022
gb|CF312925.1|CF312925 ABF--08-N22.b1 ABF3-overexpressing t... 100 1e-018
dbj|AK120390.1| Oryza sativa (japonica cultivar-group) cDNA... 100 1e-018
ref|XM_450985.1| Oryza sativa (japonica cultivar-group), mRNA 100 1e-018
>dbj|AK067639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108J11, full
insert sequence
Length = 2643
Score = 139 bits (70), Expect = 2e-030
Identities = 225/276 (81%), Gaps = 3/276 (1%)
Strand = Plus / Plus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 1394 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 1453
Query: 62 tcttctaccaacttggctacagcacctacagctctatccagagtcgatgtgaagtaatca 121
||||||||||| |||| |||||| ||||| |||||||||||| ||||||||||||| |
Sbjct: 1454 tcttctaccaagttggttacagc---tacagttctatccagagtagatgtgaagtaataa 1510
Query: 122 tgtacactatcgcactcctaactttcatgtctatcggaggatttccatccttcgtagaag 181
|||| || | ||| || ||||||||||| | || |||||||| || || ||||||||||
Sbjct: 1511 tgtatacaaccgcgcttgtaactttcatggcaattggaggattcccttctttcgtagaag 1570
Query: 182 acgtcaaggtgttcagaaaggagaggctgagcggccactacggcgtgtcggagttcgtca 241
|| | ||| | ||||||| |||||| |||||||||| ||||| || ||| || || |
Sbjct: 1571 acataaagttattcagaagggagagattgagcggccattacggagtcatggaatttgtaa 1630
Query: 242 tctccaacaccatctccgccactccatacctggccg 277
|||| |||||| |||| ||||| || ||||| ||||
Sbjct: 1631 tctcaaacaccctctcagccaccccttaccttgccg 1666
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 1771 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 1830
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 1831 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 1890
Query: 502 aacgagct 509
||||||||
Sbjct: 1891 aacgagct 1898
>dbj|AK104709.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E10, full
insert sequence
Length = 1185
Score = 131 bits (66), Expect = 4e-028
Identities = 224/276 (81%), Gaps = 3/276 (1%)
Strand = Plus / Plus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 167 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 226
Query: 62 tcttctaccaacttggctacagcacctacagctctatccagagtcgatgtgaagtaatca 121
||||||||||| |||| |||||| ||||| |||||||||||| ||||||||||||| |
Sbjct: 227 tcttctaccaagttggttacagc---tacagttctatccagagtagatgtgaagtaataa 283
Query: 122 tgtacactatcgcactcctaactttcatgtctatcggaggatttccatccttcgtagaag 181
|||| || | ||| || ||||||||||| | || |||||||| || || |||||||| |
Sbjct: 284 tgtatacaaccgcgcttgtaactttcatggcaattggaggattcccttctttcgtagagg 343
Query: 182 acgtcaaggtgttcagaaaggagaggctgagcggccactacggcgtgtcggagttcgtca 241
|| | ||| | ||||||| |||||| |||||||||| ||||| || ||| || || |
Sbjct: 344 acataaagttattcagaagggagagattgagcggccattacggagtcatggaatttgtaa 403
Query: 242 tctccaacaccatctccgccactccatacctggccg 277
|||| |||||| |||| ||||| || ||||| ||||
Sbjct: 404 tctcaaacaccctctcagccaccccttaccttgccg 439
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 544 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 603
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 604 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 663
Query: 502 aacgagct 509
||||||||
Sbjct: 664 aacgagct 671
>emb|AL954826.3|CNS08CD2 Oryza sativa chromosome 12, . BAC OSJNBb0080P14 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 132241
Score = 125 bits (63), Expect = 2e-026
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 383 tggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatca 442
||||||||||||| |||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 79698 tggtcgagagcataatgatggtgattgccgccgtcgtcccagacttcctgatgggcatcg 79639
Query: 443 tcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccca 502
|||||||| |||| ||||||| | | |||||| ||||||||||||||||||||||| |
Sbjct: 79638 tcgtcggctccggcgtgcaggctttgatgatgacaaacggcggcttcttccgcctcccga 79579
Query: 503 acgagct 509
|| ||||
Sbjct: 79578 accagct 79572
Score = 44.1 bits (22), Expect = 0.072
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 232 gagttcgtcatctccaacaccatctccgccactccatacctggccg 277
||||| |||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 79849 gagtttgtcatctccaacactctctcggccactccttacctagccg 79804
>ref|NT_107147.1| Oryza sativa (japonica cultivar-group)
Length = 1769098
Score = 125 bits (63), Expect = 2e-026
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 383 tggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatca 442
||||||||||||| |||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 422845 tggtcgagagcataatgatggtgattgccgccgtcgtcccagacttcctgatgggcatcg 422786
Query: 443 tcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccca 502
|||||||| |||| ||||||| | | |||||| ||||||||||||||||||||||| |
Sbjct: 422785 tcgtcggctccggcgtgcaggctttgatgatgacaaacggcggcttcttccgcctcccga 422726
Query: 503 acgagct 509
|| ||||
Sbjct: 422725 accagct 422719
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 558751 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 558692
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 558691 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 558632
Query: 502 aacgagct 509
||||||||
Sbjct: 558631 aacgagct 558624
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 559707 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 559648
Query: 62 tcttctaccaacttggctacagc 84
||||||||||| |||| ||||||
Sbjct: 559647 tcttctaccaagttggttacagc 559625
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 100 cagagtcgatgtgaagtaatcatgtacactatcgcactcctaactttcatgtctatcgga 159
|||||| ||||||||||||| ||||| || | ||| || ||||||||||| | || |||
Sbjct: 559506 cagagtagatgtgaagtaataatgtatacaaccgcgcttgtaactttcatggcaattgga 559447
Query: 160 ggatttccatccttcgtaga 179
||||| || || ||||||||
Sbjct: 559446 ggattcccttctttcgtaga 559427
Score = 44.1 bits (22), Expect = 0.072
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 232 gagttcgtcatctccaacaccatctccgccactccatacctggccg 277
||||| |||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 422996 gagtttgtcatctccaacactctctcggccactccttacctagccg 422951
>gb|AACV01024523.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024523, whole
genome shotgun sequence
Length = 34656
Score = 125 bits (63), Expect = 2e-026
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 383 tggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatca 442
||||||||||||| |||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 9768 tggtcgagagcataatgatggtgattgccgccgtcgtcccagacttcctgatgggcatcg 9827
Query: 443 tcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccca 502
|||||||| |||| ||||||| | | |||||| ||||||||||||||||||||||| |
Sbjct: 9828 tcgtcggctccggcgtgcaggctttgatgatgacaaacggcggcttcttccgcctcccga 9887
Query: 503 acgagct 509
|| ||||
Sbjct: 9888 accagct 9894
Score = 44.1 bits (22), Expect = 0.072
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 232 gagttcgtcatctccaacaccatctccgccactccatacctggccg 277
||||| |||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 9617 gagtttgtcatctccaacactctctcggccactccttacctagccg 9662
>gb|CH401274.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000111 genomic
scaffold, whole genome shotgun sequence
Length = 3984395
Score = 125 bits (63), Expect = 2e-026
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 383 tggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatca 442
||||||||||||| |||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 1927654 tggtcgagagcataatgatggtgattgccgccgtcgtcccagacttcctgatgggcatcg 1927595
Query: 443 tcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccca 502
|||||||| |||| ||||||| | | |||||| ||||||||||||||||||||||| |
Sbjct: 1927594 tcgtcggctccggcgtgcaggctttgatgatgacaaacggcggcttcttccgcctcccga 1927535
Query: 503 acgagct 509
|| ||||
Sbjct: 1927534 accagct 1927528
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 2040606 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 2040547
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 2040546 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 2040487
Query: 502 aacgagct 509
||||||||
Sbjct: 2040486 aacgagct 2040479
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 2041562 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 2041503
Query: 62 tcttctaccaacttggctacagc 84
||||||||||| |||| ||||||
Sbjct: 2041502 tcttctaccaagttggttacagc 2041480
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 100 cagagtcgatgtgaagtaatcatgtacactatcgcactcctaactttcatgtctatcgga 159
|||||| ||||||||||||| ||||| || | ||| || ||||||||||| | || |||
Sbjct: 2041361 cagagtagatgtgaagtaataatgtatacaaccgcgcttgtaactttcatggcaattgga 2041302
Query: 160 ggatttccatccttcgtaga 179
||||| || || ||||||||
Sbjct: 2041301 ggattcccttctttcgtaga 2041282
Score = 44.1 bits (22), Expect = 0.072
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 232 gagttcgtcatctccaacaccatctccgccactccatacctggccg 277
||||| |||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 1927805 gagtttgtcatctccaacactctctcggccactccttacctagccg 1927760
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 125 bits (63), Expect = 2e-026
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 383 tggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatca 442
||||||||||||| |||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 9976218 tggtcgagagcataatgatggtgattgccgccgtcgtcccagacttcctgatgggcatcg 9976159
Query: 443 tcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccca 502
|||||||| |||| ||||||| | | |||||| ||||||||||||||||||||||| |
Sbjct: 9976158 tcgtcggctccggcgtgcaggctttgatgatgacaaacggcggcttcttccgcctcccga 9976099
Query: 503 acgagct 509
|| ||||
Sbjct: 9976098 accagct 9976092
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 10089170 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 10089111
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 10089110 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 10089051
Query: 502 aacgagct 509
||||||||
Sbjct: 10089050 aacgagct 10089043
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 10090126 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 10090067
Query: 62 tcttctaccaacttggctacagc 84
||||||||||| |||| ||||||
Sbjct: 10090066 tcttctaccaagttggttacagc 10090044
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 100 cagagtcgatgtgaagtaatcatgtacactatcgcactcctaactttcatgtctatcgga 159
|||||| ||||||||||||| ||||| || | ||| || ||||||||||| | || |||
Sbjct: 10089925 cagagtagatgtgaagtaataatgtatacaaccgcgcttgtaactttcatggcaattgga 10089866
Query: 160 ggatttccatccttcgtaga 179
||||| || || ||||||||
Sbjct: 10089865 ggattcccttctttcgtaga 10089846
Score = 44.1 bits (22), Expect = 0.072
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 232 gagttcgtcatctccaacaccatctccgccactccatacctggccg 277
||||| |||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 9976369 gagtttgtcatctccaacactctctcggccactccttacctagccg 9976324
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 125 bits (63), Expect = 2e-026
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 383 tggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatca 442
||||||||||||| |||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 12478220 tggtcgagagcataatgatggtgattgccgccgtcgtcccagacttcctgatgggcatcg 12478161
Query: 443 tcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccca 502
|||||||| |||| ||||||| | | |||||| ||||||||||||||||||||||| |
Sbjct: 12478160 tcgtcggctccggcgtgcaggctttgatgatgacaaacggcggcttcttccgcctcccga 12478101
Query: 503 acgagct 509
|| ||||
Sbjct: 12478100 accagct 12478094
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 12614126 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 12614067
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 12614066 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 12614007
Query: 502 aacgagct 509
||||||||
Sbjct: 12614006 aacgagct 12613999
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 12615082 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 12615023
Query: 62 tcttctaccaacttggctacagc 84
||||||||||| |||| ||||||
Sbjct: 12615022 tcttctaccaagttggttacagc 12615000
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 100 cagagtcgatgtgaagtaatcatgtacactatcgcactcctaactttcatgtctatcgga 159
|||||| ||||||||||||| ||||| || | ||| || ||||||||||| | || |||
Sbjct: 12614881 cagagtagatgtgaagtaataatgtatacaaccgcgcttgtaactttcatggcaattgga 12614822
Query: 160 ggatttccatccttcgtaga 179
||||| || || ||||||||
Sbjct: 12614821 ggattcccttctttcgtaga 12614802
Score = 44.1 bits (22), Expect = 0.072
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 232 gagttcgtcatctccaacaccatctccgccactccatacctggccg 277
||||| |||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 12478371 gagtttgtcatctccaacactctctcggccactccttacctagccg 12478326
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 125 bits (63), Expect = 2e-026
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 383 tggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatca 442
||||||||||||| |||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 12432590 tggtcgagagcataatgatggtgattgccgccgtcgtcccagacttcctgatgggcatcg 12432531
Query: 443 tcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccca 502
|||||||| |||| ||||||| | | |||||| ||||||||||||||||||||||| |
Sbjct: 12432530 tcgtcggctccggcgtgcaggctttgatgatgacaaacggcggcttcttccgcctcccga 12432471
Query: 503 acgagct 509
|| ||||
Sbjct: 12432470 accagct 12432464
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 12568400 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 12568341
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 12568340 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 12568281
Query: 502 aacgagct 509
||||||||
Sbjct: 12568280 aacgagct 12568273
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 12569356 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 12569297
Query: 62 tcttctaccaacttggctacagc 84
||||||||||| |||| ||||||
Sbjct: 12569296 tcttctaccaagttggttacagc 12569274
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 100 cagagtcgatgtgaagtaatcatgtacactatcgcactcctaactttcatgtctatcgga 159
|||||| ||||||||||||| ||||| || | ||| || ||||||||||| | || |||
Sbjct: 12569155 cagagtagatgtgaagtaataatgtatacaaccgcgcttgtaactttcatggcaattgga 12569096
Query: 160 ggatttccatccttcgtaga 179
||||| || || ||||||||
Sbjct: 12569095 ggattcccttctttcgtaga 12569076
Score = 44.1 bits (22), Expect = 0.072
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 232 gagttcgtcatctccaacaccatctccgccactccatacctggccg 277
||||| |||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 12432741 gagtttgtcatctccaacactctctcggccactccttacctagccg 12432696
>gb|AACV01020218.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020218, whole
genome shotgun sequence
Length = 76063
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| || ||||| |||||||||||||||
Sbjct: 19373 ccggacttcctcatgggcatcatcaccggcgccggcgtccagggcgtcatgatgctcaac 19314
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 19313 ggcggcttcttccgcctccccaacga 19288
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 31283 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 31224
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||| ||||
Sbjct: 31223 ggcggcttcttccgcctccccgacga 31198
>ref|XM_450986.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2187
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| || ||||| |||||||||||||||
Sbjct: 1744 ccggacttcctcatgggcatcatcaccggcgccggcgtccagggcgtcatgatgctcaac 1803
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 1804 ggcggcttcttccgcctccccaacga 1829
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| || ||||| |||||||||||||||
Sbjct: 3687655 ccggacttcctcatgggcatcatcaccggcgccggcgtccagggcgtcatgatgctcaac 3687714
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 3687715 ggcggcttcttccgcctccccaacga 3687740
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 3675741 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 3675800
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||| ||||
Sbjct: 3675801 ggcggcttcttccgcctccccgacga 3675826
>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1509_C06
Length = 113436
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| || ||||| |||||||||||||||
Sbjct: 47506 ccggacttcctcatgggcatcatcaccggcgccggcgtccagggcgtcatgatgctcaac 47565
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 47566 ggcggcttcttccgcctccccaacga 47591
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 35592 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 35651
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||| ||||
Sbjct: 35652 ggcggcttcttccgcctccccgacga 35677
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| || ||||| |||||||||||||||
Sbjct: 7296960 ccggacttcctcatgggcatcatcaccggcgccggcgtccagggcgtcatgatgctcaac 7297019
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 7297020 ggcggcttcttccgcctccccaacga 7297045
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 7285050 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 7285109
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||| ||||
Sbjct: 7285110 ggcggcttcttccgcctccccgacga 7285135
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| || ||||| |||||||||||||||
Sbjct: 16770771 ccggacttcctcatgggcatcatcaccggcgccggcgtccagggcgtcatgatgctcaac 16770830
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 16770831 ggcggcttcttccgcctccccaacga 16770856
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 16758861 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 16758920
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||| ||||
Sbjct: 16758921 ggcggcttcttccgcctccccgacga 16758946
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 115 bits (58), Expect = 2e-023
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| || ||||| |||||||||||||||
Sbjct: 17995852 ccggacttcctcatgggcatcatcaccggcgccggcgtccagggcgtcatgatgctcaac 17995911
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 17995912 ggcggcttcttccgcctccccaacga 17995937
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 17983938 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 17983997
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||| ||||
Sbjct: 17983998 ggcggcttcttccgcctccccgacga 17984023
>emb|BX569687.1|CNS09SBM Oryza sativa (japonica cultivar-group) chromosome 12 clone
OSJNBb0092K12, *** SEQUENCING IN PROGRESS ***
Length = 129539
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 59313 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 59254
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 59253 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 59194
Query: 502 aacgagct 509
||||||||
Sbjct: 59193 aacgagct 59186
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 60269 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 60210
Query: 62 tcttctaccaacttggctacagc 84
||||||||||| |||| ||||||
Sbjct: 60209 tcttctaccaagttggttacagc 60187
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 100 cagagtcgatgtgaagtaatcatgtacactatcgcactcctaactttcatgtctatcgga 159
|||||| ||||||||||||| ||||| || | ||| || ||||||||||| | || |||
Sbjct: 60068 cagagtagatgtgaagtaataatgtatacaaccgcgcttgtaactttcatggcaattgga 60009
Query: 160 ggatttccatccttcgtaga 179
||||| || || ||||||||
Sbjct: 60008 ggattcccttctttcgtaga 59989
>emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC OSJNBb0092K12 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 129540
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 59314 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 59255
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 59254 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 59195
Query: 502 aacgagct 509
||||||||
Sbjct: 59194 aacgagct 59187
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 60270 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 60211
Query: 62 tcttctaccaacttggctacagc 84
||||||||||| |||| ||||||
Sbjct: 60210 tcttctaccaagttggttacagc 60188
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 100 cagagtcgatgtgaagtaatcatgtacactatcgcactcctaactttcatgtctatcgga 159
|||||| ||||||||||||| ||||| || | ||| || ||||||||||| | || |||
Sbjct: 60069 cagagtagatgtgaagtaataatgtatacaaccgcgcttgtaactttcatggcaattgga 60010
Query: 160 ggatttccatccttcgtaga 179
||||| || || ||||||||
Sbjct: 60009 ggattcccttctttcgtaga 59990
>gb|AACV01024542.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024542, whole
genome shotgun sequence
Length = 25392
Score = 111 bits (56), Expect = 4e-022
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
||||| ||||||||||||||| ||||||| | | ||||||| |||||||| ||||| |||
Sbjct: 8786 ctggtagagagcatgatgatgatcatcgcagtcatcgtcccagacttcctcatgggaatc 8727
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
||| |||| |||||| | ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 8726 atcatcggtgccgggatacagggcatgatgatgctcaatggtggcttcttccgcctcccg 8667
Query: 502 aacgagct 509
||||||||
Sbjct: 8666 aacgagct 8659
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 2 tagggtactactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcacta 61
|||| ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||||| |
Sbjct: 9742 taggctactactggatgcgtttgggcatttatttgggcattggcatttgcctcggcacca 9683
Query: 62 tcttctaccaacttggctacagc 84
||||||||||| |||| ||||||
Sbjct: 9682 tcttctaccaagttggttacagc 9660
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 100 cagagtcgatgtgaagtaatcatgtacactatcgcactcctaactttcatgtctatcgga 159
|||||| ||||||||||||| ||||| || | ||| || ||||||||||| | || |||
Sbjct: 9541 cagagtagatgtgaagtaataatgtatacaaccgcgcttgtaactttcatggcaattgga 9482
Query: 160 ggatttccatccttcgtaga 179
||||| || || ||||||||
Sbjct: 9481 ggattcccttctttcgtaga 9462
>gb|CF312925.1|CF312925 ABF--08-N22.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-N22, mRNA sequence
Length = 543
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 243 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 302
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||| ||||
Sbjct: 303 ggcggcttcttccgcctccccgacga 328
>dbj|AK120390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073P15, full
insert sequence
Length = 2470
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 1823 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 1882
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||| ||||
Sbjct: 1883 ggcggcttcttccgcctccccgacga 1908
>ref|XM_450985.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2467
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 1823 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 1882
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||| ||||
Sbjct: 1883 ggcggcttcttccgcctccccgacga 1908
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 740,437
Number of Sequences: 438736
Number of extensions: 740437
Number of successful extensions: 21950
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21557
Number of HSP's gapped (non-prelim): 391
length of query: 510
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 489
effective length of database: 2,791,206,460
effective search space: 1364899958940
effective search space used: 1364899958940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)