BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204398.2.1
(666 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB654217.1|CB654217 OSJNEc06B10.r OSJNEc Oryza sativa (j... 204 4e-050
gb|CB679365.1|CB679365 OSJNEf02M13.r OSJNEf Oryza sativa (j... 204 4e-050
dbj|AK061821.1| Oryza sativa (japonica cultivar-group) cDNA... 204 4e-050
dbj|AK099102.1| Oryza sativa (japonica cultivar-group) cDNA... 204 4e-050
ref|XM_450905.1| Oryza sativa (japonica cultivar-group), mRNA 204 4e-050
ref|XM_506666.1| PREDICTED Oryza sativa (japonica cultivar-... 204 4e-050
gb|CB655408.1|CB655408 OSJNEc08M22.r OSJNEc Oryza sativa (j... 200 7e-049
gb|CB679364.1|CB679364 OSJNEf02M13.f OSJNEf Oryza sativa (j... 184 4e-044
gb|CA755985.1|CA755985 BR030032000_PLATE_E03_21_021.ab1 OA ... 161 6e-037
dbj|AP005430.1| Oryza sativa (japonica cultivar-group) chro... 141 5e-031
dbj|AP005904.3| Oryza sativa (japonica cultivar-group) geno... 141 5e-031
dbj|AP006453.3| Oryza sativa (japonica cultivar-group) geno... 141 5e-031
gb|AACV01019900.1| Oryza sativa (japonica cultivar-group) c... 141 5e-031
ref|NT_107083.1| Oryza sativa (japonica cultivar-group) 141 5e-031
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 141 5e-031
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 141 5e-031
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 141 5e-031
gb|CB654216.1|CB654216 OSJNEc06B10.f OSJNEc Oryza sativa (j... 98 7e-018
gb|C27470.1|C27470 C27470 Rice callus cDNA Oryza sativa (ja... 62 4e-007
>gb|CB654217.1|CB654217 OSJNEc06B10.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc06B10 3', mRNA sequence
Length = 657
Score = 204 bits (103), Expect = 4e-050
Identities = 226/267 (84%)
Strand = Plus / Minus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 393 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 334
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||||||| |||| || ||| ||||||||||| | ||||||||||| | |||
Sbjct: 333 aagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtaca 274
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||||||||||||| || || |||||||| || || ||||||||||||||||| ||||||
Sbjct: 273 cttataagggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtac 214
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || || |||||||||| |||||||| ||||| || |||||||| |||
Sbjct: 213 tacaagaaatacaaaaaatcattagctgaagctatccattccgagacctcaggaaattat 154
Query: 241 cggacattccttctttcacttgttggt 267
|| |||||||| ||||| || ||||||
Sbjct: 153 cgaacattcctcctttctctagttggt 127
>gb|CB679365.1|CB679365 OSJNEf02M13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M13 3', mRNA sequence
Length = 767
Score = 204 bits (103), Expect = 4e-050
Identities = 226/267 (84%)
Strand = Plus / Minus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 577 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 518
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||||||| |||| || ||| ||||||||||| | ||||||||||| | |||
Sbjct: 517 aagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtaca 458
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||||||||||||| || || |||||||| || || ||||||||||||||||| ||||||
Sbjct: 457 cttataagggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtac 398
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || || |||||||||| |||||||| ||||| || |||||||| |||
Sbjct: 397 tacaagaaatacaaaaaatcattagctgaagctatccattccgagacctcaggaaattat 338
Query: 241 cggacattccttctttcacttgttggt 267
|| |||||||| ||||| || ||||||
Sbjct: 337 cgaacattcctcctttctctagttggt 311
>dbj|AK061821.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B11, full
insert sequence
Length = 1298
Score = 204 bits (103), Expect = 4e-050
Identities = 226/267 (84%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 780 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 839
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||||||| |||| || ||| ||||||||||| | ||||||||||| | |||
Sbjct: 840 aagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtaca 899
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||||||||||||| || || |||||||| || || ||||||||||||||||| ||||||
Sbjct: 900 cttataagggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtac 959
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || || |||||||||| |||||||| ||||| || |||||||| |||
Sbjct: 960 tacaagaaatacaaaaaatcattagctgaagctatccattccgagacctcaggaaattat 1019
Query: 241 cggacattccttctttcacttgttggt 267
|| |||||||| ||||| || ||||||
Sbjct: 1020 cgaacattcctcctttctctagttggt 1046
>dbj|AK099102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033F23, full
insert sequence
Length = 1296
Score = 204 bits (103), Expect = 4e-050
Identities = 226/267 (84%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 778 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 837
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||||||| |||| || ||| ||||||||||| | ||||||||||| | |||
Sbjct: 838 aagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtaca 897
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||||||||||||| || || |||||||| || || ||||||||||||||||| ||||||
Sbjct: 898 cttataagggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtac 957
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || || |||||||||| |||||||| ||||| || |||||||| |||
Sbjct: 958 tacaagaaatacaaaaaatcattagctgaagctatccattccgagacctcaggaaattat 1017
Query: 241 cggacattccttctttcacttgttggt 267
|| |||||||| ||||| || ||||||
Sbjct: 1018 cgaacattcctcctttctctagttggt 1044
>ref|XM_450905.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1296
Score = 204 bits (103), Expect = 4e-050
Identities = 226/267 (84%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 778 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 837
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||||||| |||| || ||| ||||||||||| | ||||||||||| | |||
Sbjct: 838 aagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtaca 897
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||||||||||||| || || |||||||| || || ||||||||||||||||| ||||||
Sbjct: 898 cttataagggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtac 957
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || || |||||||||| |||||||| ||||| || |||||||| |||
Sbjct: 958 tacaagaaatacaaaaaatcattagctgaagctatccattccgagacctcaggaaattat 1017
Query: 241 cggacattccttctttcacttgttggt 267
|| |||||||| ||||| || ||||||
Sbjct: 1018 cgaacattcctcctttctctagttggt 1044
>ref|XM_506666.1| PREDICTED Oryza sativa (japonica cultivar-group), B1339H09.19 mRNA
Length = 1298
Score = 204 bits (103), Expect = 4e-050
Identities = 226/267 (84%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 780 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 839
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||||||| |||| || ||| ||||||||||| | ||||||||||| | |||
Sbjct: 840 aagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtaca 899
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||||||||||||| || || |||||||| || || ||||||||||||||||| ||||||
Sbjct: 900 cttataagggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtac 959
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || || |||||||||| |||||||| ||||| || |||||||| |||
Sbjct: 960 tacaagaaatacaaaaaatcattagctgaagctatccattccgagacctcaggaaattat 1019
Query: 241 cggacattccttctttcacttgttggt 267
|| |||||||| ||||| || ||||||
Sbjct: 1020 cgaacattcctcctttctctagttggt 1046
>gb|CB655408.1|CB655408 OSJNEc08M22.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08M22 3', mRNA sequence
Length = 785
Score = 200 bits (101), Expect = 7e-049
Identities = 218/257 (84%)
Strand = Plus / Minus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 568 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 509
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||||||| |||| || ||| ||||||||||| | ||||||||||| | |||
Sbjct: 508 aagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtaca 449
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||||||||||||| || || |||||||| || || ||||||||||||||||| ||||||
Sbjct: 448 cttataagggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtac 389
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || || |||||||||| |||||||| ||||| || |||||||| |||
Sbjct: 388 tacaagaaatacaaaaaatcattagctgaagctatccattccgagacctcaggaaattat 329
Query: 241 cggacattccttctttc 257
|| |||||||| |||||
Sbjct: 328 cgaacattcctcctttc 312
>gb|CB679364.1|CB679364 OSJNEf02M13.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02M13 5', mRNA sequence
Length = 782
Score = 184 bits (93), Expect = 4e-044
Identities = 204/241 (84%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 542 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 601
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||||||| |||| || ||| ||||||||||| | ||||||||||| | |||
Sbjct: 602 aagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtaca 661
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||||||||||||| || || |||||||| || || ||||||||||||||||| ||||||
Sbjct: 662 cttataagggttgtagtaacaaggactgagatcgacatgcaatatatcaaggctgagtac 721
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || || |||||||||| |||||||| ||||| || |||||||| |||
Sbjct: 722 tacaagaaatacaaaaaatcattagctgaagctatccattccgagacctcaggaaattat 781
Query: 241 c 241
|
Sbjct: 782 c 782
>gb|CA755985.1|CA755985 BR030032000_PLATE_E03_21_021.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030032000_PLATE_E03_21_021.ab1 similar to annexin-like
protein [Medicago sativa], mRNA sequence
Length = 605
Score = 161 bits (81), Expect = 6e-037
Identities = 207/251 (82%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 326 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 385
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
|||||||||||| || |||| || ||| ||||||||||| | ||||||||||| | |||
Sbjct: 386 aagtattttgcanaggtcttgcggaagtccatgaaaggtatgggcactgatgatagtaca 445
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
||||| |||||||| || || |||||||| || || |||| |||||||||||| ||||||
Sbjct: 446 cttatnagggttgtagtaacaaggactgagatcgacatgcnatatatcaaggctgagtac 505
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| | |||| || || || |||||||||| |||||||| ||||| || ||| || | |||
Sbjct: 506 tacnagaaatacaaaaaatcattagctgaagctatccattccgagacctcanganattat 565
Query: 241 cggacattcct 251
|| ||||||||
Sbjct: 566 cgaacattcct 576
>dbj|AP005430.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0705B06, ***
SEQUENCING IN PROGRESS ***
Length = 154064
Score = 141 bits (71), Expect = 5e-031
Identities = 152/179 (84%)
Strand = Plus / Minus
Query: 89 ccatgaaaggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactg 148
||||||||||| | ||||||||||| | ||||||||||||||||| || || |||||||
Sbjct: 152708 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 152649
Query: 149 aaattgatatgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctg 208
| || || ||||||||||||||||| ||||||| |||||| || || || |||||||||
Sbjct: 152648 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 152589
Query: 209 aggctatccactccgaaacatcaggaaactatcggacattccttctttcacttgttggt 267
| |||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 152588 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 152530
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 154024 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 153965
Query: 61 aagtattttgcaaag 75
|||||||||||||||
Sbjct: 153964 aagtattttgcaaag 153950
>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1040D06
Length = 155034
Score = 141 bits (71), Expect = 5e-031
Identities = 152/179 (84%)
Strand = Plus / Plus
Query: 89 ccatgaaaggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactg 148
||||||||||| | ||||||||||| | ||||||||||||||||| || || |||||||
Sbjct: 54434 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 54493
Query: 149 aaattgatatgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctg 208
| || || ||||||||||||||||| ||||||| |||||| || || || |||||||||
Sbjct: 54494 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 54553
Query: 209 aggctatccactccgaaacatcaggaaactatcggacattccttctttcacttgttggt 267
| |||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 54554 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 54612
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 53118 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 53177
Query: 61 aagtattttgcaaag 75
|||||||||||||||
Sbjct: 53178 aagtattttgcaaag 53192
>dbj|AP006453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1339H09
Length = 131136
Score = 141 bits (71), Expect = 5e-031
Identities = 152/179 (84%)
Strand = Plus / Plus
Query: 89 ccatgaaaggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactg 148
||||||||||| | ||||||||||| | ||||||||||||||||| || || |||||||
Sbjct: 93736 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 93795
Query: 149 aaattgatatgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctg 208
| || || ||||||||||||||||| ||||||| |||||| || || || |||||||||
Sbjct: 93796 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 93855
Query: 209 aggctatccactccgaaacatcaggaaactatcggacattccttctttcacttgttggt 267
| |||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 93856 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 93914
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 92420 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 92479
Query: 61 aagtattttgcaaag 75
|||||||||||||||
Sbjct: 92480 aagtattttgcaaag 92494
>gb|AACV01019900.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019900, whole
genome shotgun sequence
Length = 5795
Score = 141 bits (71), Expect = 5e-031
Identities = 152/179 (84%)
Strand = Plus / Minus
Query: 89 ccatgaaaggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactg 148
||||||||||| | ||||||||||| | ||||||||||||||||| || || |||||||
Sbjct: 1532 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 1473
Query: 149 aaattgatatgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctg 208
| || || ||||||||||||||||| ||||||| |||||| || || || |||||||||
Sbjct: 1472 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 1413
Query: 209 aggctatccactccgaaacatcaggaaactatcggacattccttctttcacttgttggt 267
| |||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 1412 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 1354
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 2848 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 2789
Query: 61 aagtattttgcaaag 75
|||||||||||||||
Sbjct: 2788 aagtattttgcaaag 2774
>ref|NT_107083.1| Oryza sativa (japonica cultivar-group)
Length = 598321
Score = 141 bits (71), Expect = 5e-031
Identities = 152/179 (84%)
Strand = Plus / Plus
Query: 89 ccatgaaaggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactg 148
||||||||||| | ||||||||||| | ||||||||||||||||| || || |||||||
Sbjct: 104306 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 104365
Query: 149 aaattgatatgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctg 208
| || || ||||||||||||||||| ||||||| |||||| || || || |||||||||
Sbjct: 104366 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 104425
Query: 209 aggctatccactccgaaacatcaggaaactatcggacattccttctttcacttgttggt 267
| |||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 104426 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 104484
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 102990 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 103049
Query: 61 aagtattttgcaaag 75
|||||||||||||||
Sbjct: 103050 aagtattttgcaaag 103064
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 141 bits (71), Expect = 5e-031
Identities = 152/179 (84%)
Strand = Plus / Plus
Query: 89 ccatgaaaggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactg 148
||||||||||| | ||||||||||| | ||||||||||||||||| || || |||||||
Sbjct: 3046026 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 3046085
Query: 149 aaattgatatgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctg 208
| || || ||||||||||||||||| ||||||| |||||| || || || |||||||||
Sbjct: 3046086 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 3046145
Query: 209 aggctatccactccgaaacatcaggaaactatcggacattccttctttcacttgttggt 267
| |||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 3046146 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 3046204
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 3044710 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 3044769
Query: 61 aagtattttgcaaag 75
|||||||||||||||
Sbjct: 3044770 aagtattttgcaaag 3044784
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 141 bits (71), Expect = 5e-031
Identities = 152/179 (84%)
Strand = Plus / Plus
Query: 89 ccatgaaaggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactg 148
||||||||||| | ||||||||||| | ||||||||||||||||| || || |||||||
Sbjct: 12519837 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 12519896
Query: 149 aaattgatatgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctg 208
| || || ||||||||||||||||| ||||||| |||||| || || || |||||||||
Sbjct: 12519897 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 12519956
Query: 209 aggctatccactccgaaacatcaggaaactatcggacattccttctttcacttgttggt 267
| |||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 12519957 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 12520015
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 12518521 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 12518580
Query: 61 aagtattttgcaaag 75
|||||||||||||||
Sbjct: 12518581 aagtattttgcaaag 12518595
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 141 bits (71), Expect = 5e-031
Identities = 152/179 (84%)
Strand = Plus / Plus
Query: 89 ccatgaaaggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactg 148
||||||||||| | ||||||||||| | ||||||||||||||||| || || |||||||
Sbjct: 13656320 ccatgaaaggtatgggcactgatgatagtacacttataagggttgtagtaacaaggactg 13656379
Query: 149 aaattgatatgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctg 208
| || || ||||||||||||||||| ||||||| |||||| || || || |||||||||
Sbjct: 13656380 agatcgacatgcaatatatcaaggctgagtactacaagaaatacaaaaaatcattagctg 13656439
Query: 209 aggctatccactccgaaacatcaggaaactatcggacattccttctttcacttgttggt 267
| |||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 13656440 aagctatccattccgagacctcaggaaattatcgaacattcctcctttctctagttggt 13656498
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 13655004 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 13655063
Query: 61 aagtattttgcaaag 75
|||||||||||||||
Sbjct: 13655064 aagtattttgcaaag 13655078
>gb|CB654216.1|CB654216 OSJNEc06B10.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc06B10 5', mRNA sequence
Length = 846
Score = 97.6 bits (49), Expect = 7e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 725 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 784
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatga 113
||||||||||||||| |||| || ||| ||||||||||| | |||||||||||
Sbjct: 785 aagtattttgcaaaggtcttgcggaagtccatgaaaggtatgggcactgatga 837
>gb|C27470.1|C27470 C27470 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51961_1A, mRNA sequence
Length = 395
Score = 61.9 bits (31), Expect = 4e-007
Identities = 83/100 (83%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||| | || || || |||||||||||||||| || || |||||
Sbjct: 291 acatctggaaactttgaacttgctctgctaactatcctcagatgcgctgagaatccagcc 350
Query: 61 aagtattttgcaaagctcttac-gaaaggccatgaaaggt 99
|||| |||| ||||| |||| | | ||| |||||||||||
Sbjct: 351 aagtnttttncaaaggtcttncgggaagtccatgaaaggt 390
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 828,133
Number of Sequences: 438736
Number of extensions: 828133
Number of successful extensions: 4285
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4238
Number of HSP's gapped (non-prelim): 47
length of query: 666
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 645
effective length of database: 2,791,206,460
effective search space: 1800328166700
effective search space used: 1800328166700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)